Influence of calcium, potassium, and magnesium on Cornus florida L. density and resistance to dogwood anthracnose

Dogwood anthracnose, a major disease of Cornus florida L., has caused heavy mortality of C. florida in eastern United States forests. Disease severity and rate of infection have been shown to vary with several environmental factors, but the link between soil cation availability and anthracnose has not been examined. We hypothesized that soil cation availability, particularly calcium (Ca), potassium (K), and magnesium (Mg), would influence dogwood survival from anthracnose. In forested stands, positive correlations between soil Ca, K, and Mg saturation and C. florida stem density and basal area were found. The effect of these cations at four levels (0, 50, 100, and 200%) of a standard nursery fertilization rate on C. florida seedling survival and resistance to dogwood anthracnose was tested. Although most of the seedlings died after one season of exposure to dogwood anthracnose, seedlings that had lower inputs of Ca and K cations showed higher levels of disease severity sooner than seedlings in other treatments, suggesting that these nutrients play a role in C. florida survival from anthracnose. Magnesium treatment levels did not appear to have an effect on C. florida disease severity or mortality.     

The relationship between fire history and an exotic fungal disease in a deciduous forest

Exotic diseases have fundamentally altered the structure and function of forest ecosystems. Controlling exotic diseases across large expanses of forest has proven difficult, but fire may reduce the levels of diseases that are sensitive to environmental conditions. We examined Cornus florida populations in burned and unburned Quercus–Carya stands to determine if burning prior to anthracnose infection has reduced the impacts of an exotic fungal disease, dogwood anthracnose, caused by Discula destructiva. We hypothesized that fire has altered stand structure and created open conditions less conducive to dogwood anthracnose. We compared C. florida density, C. florida health, and species composition and density among four sampling categories: unburned stands, and stands that had burned once, twice, and 3 times over a 20-year period (late 1960s to late 1980s). Double burn stands contained the greatest density of C. florida stems (770 stems ha⁻¹) followed by triple burn stands (233 stems ha⁻¹), single burn stands (225 stems ha⁻¹) and unburned stands (70 stems ha⁻¹; P < 0.01). We observed less crown dieback in small C. florida trees (<5 cm diameter at breast height) in burned stands than in unburned stands (P < 0.05). Indicator species analysis showed that burning favored species historically associated with Quercus–Carya forests and excluded species associated with secondary succession following nearly a century of fire suppression. Our results suggest that fire may mitigate the decline of C. florida populations under attack by an exotic pathogen by altering forest structure and composition. Further, our results suggest that the burns we sampled have had an overall restorative effect on forest communities and were within the fire return interval of the historic fire regime. Consequently, prescribed fire may offer a management tool to reduce the impacts of fungal disease in forest ecosystems that developed under historic burning regimes.     

Gradient analysis of the distribution of a fungal disease of Cornus florida in the southern Appalachian Mountains,Tennessee

Abstract: Based on 115 samples collected throughout the western portion of Great Smoky Mountains National Park, southern Appalachian Mts., and on spatial data derived in a GIS (Geographical Information System), the distribution of the disease dogwood anthracnose affecting Cornus florida (flowering dogwood), caused by the fungus Discula destructiva in this portion of the Park was assessed, and factors contributing to the disease's severity were identified through correlation and multiple linear regression analysis. The degree of infection varies considerably locally, and is influenced by elevation, slope curvature, slope position, and potential soil moisture. However, the abundance of C. florida (stem density) alone explains 25 % of the variation in disease severity. Factors contributing to disease severity do not change significantly between disturbed and undisturbed sites. The highest mortality rates are restricted to dense stands in damp, sheltered sites at low slope positions, implying that surviving populations of flowering dogwood may represent a biased genetic subset of the original population.     

Analysis of genetic diversity in flowering dogwood natural stands using microsatellites: the effects of dogwood anthracnose

Flowering dogwood (Cornus florida L.) populations recently have experienced severe declines caused by dogwood anthracnose. Mortality has ranged from 48 to 98%, raising the concern that genetic diversity has been reduced significantly. Microsatellite data were used to evaluate the level and distribution of genetic variation throughout much of the native range of the tree. Genetic variation in areas affected by anthracnose was as high as or higher than areas without die-offs. We found evidence of four widespread, spatially contiguous genetic clusters. However, there was little relationship between geographic distance and genetic difference. These observations suggest that high dispersal rates and large effective population sizes have so far prevented rapid loss of genetic diversity. The effects of anthracnose on demography and community structure are likely to be far more consequential than short-term genetic effects.     

Genetic diversity of flowering dogwood in the Great Smoky Mountains National Park

In the past three decades, flowering dogwood (Cornus florida) populations have experienced severe declines caused by dogwood anthracnose. Mortality has ranged from 48% to 98%, raising the concern that the genetic diversity of this native tree has been reduced significantly. In this study, we investigated levels of genetic diversity and population structure of flowering dogwood populations in the Great Smoky Mountains National Park (GSMNP). Understanding the factors influencing geographic distribution of genetic variation is one of the major concerns for preserving biodiversity and conservation of native populations. Eighteen microsatellite loci were used to evaluate the level and distribution of genetic variation of native flowering dogwood trees throughout the GSMNP. Significant genetic structure exists at both landscape and local levels. Two genetic clusters exist within the park and are separated by the main dividing ridges of the Great Smoky Mountains. The differentiation of the clusters is subtle, but statistically significant. Gene flow, evident through low-elevation corridors, indicates that nonrandom mating occurs between related individuals despite wide dispersal of seeds. Although high mortality rate and reduced fecundity caused by dogwood anthracnose severely affected native flowering dogwood populations throughout the entire GSMNP, this study confirmed that considerable genetic diversity still exists at the population level. It seems unlikely that recent demographic dynamics have resulted in a depletion of genetic variation.     

Discovering variation of secondary metabolite diversity and its relationship with disease resistance in Cornus florida L.

Understanding intraspecific relationships between genetic and functional diversity is a major goal in the field of evolutionary biology and is important for conserving biodiversity. Linking intraspecific molecular patterns of plants to ecological pressures and trait variation remains difficult due to environment‐driven plasticity. Next‐generation sequencing, untargeted liquid chromatography–mass spectrometry (LC‐MS) profiling, and interdisciplinary approaches integrating population genomics, metabolomics, and community ecology permit novel strategies to tackle this problem. We analyzed six natural populations of the disease‐threatened Cornus florida L. from distinct ecological regions using genotype‐by‐sequencing markers and LC‐MS‐based untargeted metabolite profiling. We tested the hypothesis that higher genetic diversity in C. florida yielded higher chemical diversity and less disease susceptibility (screening hypothesis), and we also determined whether genetically similar subpopulations were similar in chemical composition. Most importantly, we identified metabolites that were associated with candidate loci or were predictive biomarkers of healthy or diseased plants after controlling for environment. Subpopulation clustering patterns based on genetic or chemical distances were largely congruent. While differences in genetic diversity were small among subpopulations, we did observe notable similarities in patterns between subpopulation averages of rarefied‐allelic and chemical richness. More specifically, we found that the most abundant compound of a correlated group of putative terpenoid glycosides and derivatives was correlated with tree health when considering chemodiversity. Random forest biomarker and genomewide association tests suggested that this putative iridoid glucoside and other closely associated chemical features were correlated to SNPs under selection.     

The Association of Discula destructiva (Red.) Hyphae With Cornus florida (L.) Trichomes

Detached, surface-dismfested flowering dogwood (Cornus florida L.) leaves were inoculated with a Discula destructiva (Red.) spore suspension in an effort to identify inoculation and pre-penetration phenomena in the dogwood anthracnose pathosystem. Scanning electron micrographs show an association of D. destructiva hyphae with trichomes on the flowering dogwood upper leaf surface. The basal area of these leaf hairs may provide an entry point for Discula spp. colonization of and penetration into the dogwood leaf; however, the possible significance of this area as a unique ecological niche on the dogwood phylloplane should not be ignored.     

Decline of <Emphasis Type="Italic">Cornus florida</Emphasis> and forest succession in a <Emphasis Type="Italic">Quercus–Carya</Emphasis> forest

Cornus florida is a common understory species in many hardwood forests in eastern North America. It plays an important role in nutrient cycling and is an important food resource for many vertebrate species, especially migratory birds. We used data collected over a 16-year period to examine population dynamics of a tagged population of C. florida in a 6.4 ha area in the context of change in the protected Quercus–Carya forest of the Ross Biological Reserve, Indiana. We examined the hypothesis that forest dynamics result from interactions between long-term ecological succession and pathogens. The C. florida population at the Ross Reserve declined by 50% between 1983 and 2000, with a survivorship of 24%. Analysis of 40 years of forest survey data showed that Quercus and Carya populations declined in importance, while Acer saccharum increased dramatically. This change in forest structure is consistent with successional changes occurring throughout the Midwest and can be attributed to suppression of disturbance. Cornus florida declined more sharply where A. saccharum increased. From 1983 to 1999, C. florida were less likely to survive if they were within 5 m of a A. saccharum. Light measurements showed that A. saccharum abundance correlated negatively with light available to C. florida, suggesting that increased shading by A. saccharum contributed to C. florida decline. The fungus, Discula destructiva causes the disease dogwood anthracnose that is associated with widespread decline of C. florida in the eastern United States. Tests for this pathogen in our study area were mostly negative. Other tests revealed that Armillaria root rot infected most C. florida, but this disease seemed to be a secondary effect of shading by A. saccharum. These results suggest that the lack of fire and other anthropogenic disturbances has resulted in an accelerated shift in dominance from Quercus and Carya to A. saccharum in the main canopy, and this shift, in turn, has resulted in increased shading of C. florida and its decline in previously more open Midwestern forests.     

In vitro detection of Cornus florida callus insensitive to toxic metabolites of Discula destructiva

Summary Dogwood anthracnose, caused by the fungus Discula destructiva Redlin, is a severe disease of flowering dogwood (Cornus florida L.) and Pacific dogwood (C. nuttallii Aud.). Disease control is inadequate in nurseries and landscapes and absent in the forest, and resistant cultivars are not commercially available. The ability to select tissues insensitive to culture filtrates from D. destructiva in vitro offers a novel and important approach for the selection of dogwood genotypes that are resistant to or tolerant of this devastating fungus. Embryo-derived dogwood callus cultures were established on Murashige and Skoog medium amended with benzyladenine (BA) and either 2,4-dichlorophenoxyacetic acid (2,4-D) or naphthaleneacetic acid (NAA). Selection for insensitivity to D. destructiva metabolites was done by placement of individual cultures on media amended with progressively higher concentrations of a partially purified culture filtrate (PPCF) containing lowmolecular-weight compounds. Following this selection process, cultures were challenged in a dose-response format with PPCF to determine whether the sensitivity of the callus to the culture filtrate had changed. During the selection period, the fresh weight of callus grown on medium containing 2,4-D and amended with PPCF was always less than that of callus grown on medium amended with the same concentration of potato-dextrose broth (PDB, negative control). Fresh weight of callus was greater on medium containing NAA amended with PPCF than on medium with the same concentration of PDB. Callus selected in the presence of NAA showed decreased sensitivity to toxic metabolites at higher concentrations of culture filtrate. The in vitro system described may assist in the identification of disease-resistant germplasm important to the long-term survival of flowering dogwood.     

Variability in response specificity of apple, hawthorn, and flowering dogwood-infesting Rhagoletis flies to host fruit volatile blends: implications for sympatric host shifts

Rhagoletis pomonella Walsh (Diptera: Tephritidae) originating from domesticated apple (Malus pumila), hawthorn (Crataegus mollis) (Rosaceae), and flowering dogwood (Cornus florida) (Cornaceae) were tested sequentially in flight‐tunnel assays to volatile blends previously identified from the three fruit types. The majority of flies flew to odor sources containing their natal blend (68–83%). Some flies from each fruit type also flew to non‐natal fruit blends (11–39%), but of these non‐natal responders the vast majority were flies that responded to their natal blend as well. The results indicate that individual flies within R. pomonella populations infesting different host types have different degrees of specificity with respect to discriminating among fruit volatile blends, and that a moderate proportion of apple, hawthorn, and dogwood flies (10–30%) are broad responders, with the capacity to recognize and orient to more than one blend. The observed variability in response specificity could facilitate sympatric shifts to new host plants.     

Antagonist effects of non-host fruit volatiles on discrimination of host fruit by Rhagoletis flies infesting apple (Malus pumila), hawthorn (Crataegus spp.), and flowering dogwood (Cornus florida)

In previous flight‐tunnel tests Rhagoletis pomonella (Walsh) (Diptera: Tephritidae) flies originating from domestic apple (Malus pumila), hawthorn (Crataegus spp.), and flowering dogwood (Cornus florida), displayed greater numbers of upwind flights to blends of volatiles identified from their natal fruit compared to non‐natal fruit. Here, we show that when certain non‐host volatiles were added to the host blend, significantly fewer apple, hawthorn, and dogwood flies exhibited sustained upwind flight to the source. Specifically, the upwind flight of apple flies to the apple blend was significantly antagonized by the addition of the hawthorn or dogwood blends, the addition of 3‐methylbutan‐1‐ol alone (a key volatile for hawthorn and dogwood flies), or the combination of 3‐methylbutan‐1‐ol and another key dogwood volatile, 1‐octen‐3‐ol. Similarly, the upwind flight of dogwood and hawthorn flies to their respective natal blends was antagonized by the addition of the apple blend or the key apple volatile butyl hexanoate. Experiments were also conducted to determine whether non‐natal fruit volatiles could disrupt the close‐range flight response of flies to the visual stimulus of fruit alone, represented by an odorless red sphere. Tests with apple‐origin flies showed that when the hawthorn blend, the dogwood blend, or the key antagonist volatiles from each (3‐methylbutan‐1‐ol and 1‐octen‐3‐ol) were added to a red sphere fruit mimic, significantly lower proportions of flies were captured, compared with captures when no odor was present. Our results support the hypothesis that agonist and antagonist properties of fruit volatiles can play an important role in host recognition/discrimination by Rhagoletis flies.     

Infra-specific diversity of Colletotrichum truncatum associated with chilli anthracnose in India based on microsatellite marker analysis

Colletotrichum truncatum is a fungal species associated with anthracnose disease in many economically important crops within the plant families Fabaceae and Solanaceae. Understanding the degree of genetic diversity within C. truncatum population will provide insights into the ability of this species to evolve in response to environmental conditions, and thus be helpful in designing effective control strategies for this pathogen. In this study, microsatellite markers from 27 loci were used to investigate the genetic diversity and population structure among 99 isolates of C. truncatum from India. All the loci (100%) were polymorphic and a total of 140 different alleles were amplified. Six distinct groups were obtained based on unweighted pair group method with arithmetical average cluster analysis. The isolates belonging to Group V showed the highest level of genetic diversity and a broad host range. Analysis of molecular variance analysis showed that the variation occurs mostly within groups. Microsatellite markers-based genetic diversity estimation revealed high diversity among C. truncatum isolates from India.     

Species diversity and phylogeography of Cornus kousa (Asian dogwood) captured by genomic and genic microsatellites

Cornus kousa (Asian dogwood), an East Asia native tree, is the most economically important species of the dogwood genus, owing to its desirable horticultural traits and ability to hybridize with North America‐native dogwoods. To assess the species genetic diversity and to better inform the ongoing and future breeding efforts, we assembled an herbarium and arboretum collection of 131 noncultivated C. kousa specimens. Genotyping and capillary electrophoresis analyses of our C. kousa collection with the newly developed genic and published nuclear genomic microsatellites permitted assessment of genetic diversity and evolutionary history of the species. Regardless of the microsatellite type used, the study yielded generally similar insights into the C. kousa diversity with subtle differences deriving from and underlining the marker used. The accrued evidence pointed to the species distinct genetic pools related to the plant country of origin. This can be helpful in the development of the commercial cultivars for this important ornamental crop with increased pyramided utility traits. Analyses of the C. kousa evolutionary history using the accrued genotyping datasets pointed to an unsampled ancestor population, possibly now extinct, as per the phylogeography of the region. To our knowledge, there are few studies utilizing the same gDNA collection to compare performance of genomic and genic microsatellites. This is the first detailed report on C. kousa species diversity and evolutionary history inference.     

GENETIC DIVERGENCE ALONG THE SPECIATION CONTINUUM: THE TRANSITION FROM HOST RACE TO SPECIES IN RHAGOLETIS (DIPTERA: TEPHRITIDAE)

Studies of related populations varying in their degrees of reproductive isolation can provide insights into speciation. Here, the transition from partially isolated host races to more fully separated sibling species is investigated by comparing patterns of genetic differentiation between recently evolved (～150 generations) apple and ancestral hawthorn‐infesting populations of Rhagoletis pomonella to their sister taxon, the undescribed flowering dogwood fly attacking Cornus florida. No fixed or diagnostic private alleles differentiating the three populations were found at any of 23 microsatellites and 10 allozymes scored. Nevertheless, allele frequency differences were sufficient across loci for flowering dogwood fly populations from multiple localities to form a diagnosable genotypic cluster distinct from apple and hawthorn flies, indicative of species status. Genome‐wide patterns of differentiation were correlated between the host races and species pair comparisons along the majority of chromosomes, suggesting that similar disruptive selection pressures affect most loci. However, differentiation was more pronounced, with some additional regions showing elevated divergence, for the species pair comparison. Our results imply that Rhagoletis sibling species such as the flowering dogwood fly represent host races writ large, with the transition to species status primarily resulting from increased divergence of the same regions separating apple and hawthorn flies.     

Ascocarp formation and survival and primary inoculum production in Erysiphe (sect. Microsphaera) pulchra in dogwood powdery mildew

Development of powdery mildew Erysiphe (sect. Microsphaera) pulchra in dogwood (Cornus florida) was assessed over a 5‐year period (1996–2000). Variations in the timing of initial infection, disease severity, ascocarp formation, and primary inoculum density were evaluated. Ascocarps formed late in the growing season (September‐November) when relatively low temperatures (< 27°C) persisted for at least 2 weeks, but ascocarp abundance was not influenced by disease severity. Studies conducted in a controlled environment showed that low temperatures triggered ascocarp formation and neither day length nor host plant age affected ascocarp formation. Ascocarps formed within 12–14 days at 18°C/ 10°C (day/night) and 23°C/15°C, but required 25 days at 26°C/18°C; no ascocarps formed at 28°C/ 20°C. Because ascocarps are an important source of primary inoculum for dogwood powdery mildew, ascocarp survival was evaluated in a 2‐year study (1998–2000). 60–80% of mature, dark‐coloured ascocarps survived at ‐10°C and ‐20°C and maintained viable spores for 4 months, but only 4–12% of partially developed, light brown ascocarps survived at ‐10°C and ‐20°C in the first experiment and only 30–40% survived in the second experiment. Immature ascocarp initials (cream‐yellow in colour) withered and disintegrated at all temperatures (24°C/20°C, 4°C, ‐10°C, and ‐20°C). Because ascocarps need time to mature, the timing of ascocarp initiation affects ascocarp maturity and thus winter survival and primary inoculum density. The evaluation of spring inoculum dispersal to spore traps and trap plants in 1999 and 2000 showed that rainfall patterns in early spring influenced primary inoculum and thus the timing of initial infection.     

Common Multiple dsRNAs Are Present in Populations of the Fungus Discula destructiva Originating from Widely Separated Geographic Locations

DsRNAs were detected in 85/108 isolates of Discula destructiva, the cause of dogwood anthracnose, collected in South Carolina, Idaho, and Alabama. The eastern isolates contained a greater diversity of dsRNA than did Idaho isolates, but most isolates, irrespective of state of origin, contained two small bands (ca. 1.5–2.5 kb) with sequence homology indicated by Northern hybridization. Differences in the banding patterns suggest that genetic diversity of dsRNA in D. destructiva is generated rapidly and that D. destructiva can be simultaneously infected by multiple dsRNA viruses. Received: 19 June 2000 / Accepted: 16 August 2000     

Genetic Diversity and Pathogenic Variability of Colletotrichum truncatum Causing Anthracnose of Pepper in Malaysia

Colletotrichum truncatum was initially described from pepper and has been reported to infect 180 host genera in 55 plant families worldwide. Samples were collected from pepper plants showing typical anthracnose symptoms. Diseased samples after isolation were identified as C. truncatum based on morphological characters and ITS‐rDNA and β‐tubulin sequence data. Intersimple sequence repeat (ISSR) markers were used to estimate genetic diversity in C. truncatum from Malaysia. A set of 3 ISSR primers revealed a total 26 allele from the amplified products. Cluster analysis with UPGMA method clustered C. truncatum isolates into two main groups, which differed with a distance of 0.64. However, the genetic diversity of C. truncatum isolates showed correlation between genetic and geographical distribution, but it failed to reveal a relationship between clustering and pathogenic variability. Phylogenetic analyses discriminated the C. truncatum isolates from other reference Colletotrichum species derived from GenBank. Among the morphological characters, shape, colour of colony and growth rate in culture were partially correlated with the ISSR and phylogenetic grouping. Pathogenicity tests revealed that C. truncatum isolates were causal agents for pepper anthracnose. In the cross‐inoculation assays, C. truncatum isolates were able to produce anthracnose symptoms on tomato, eggplant, onion, lettuce and cabbage. A pathogenicity and cross‐inoculation studies indicated the potential of C. truncatum for virulence and dominancy on plant resistance.     

Comparing Pool‐seq,Rapture, and GBS genotyping for inferring weak population structure: The American lobster (Homarus americanus) as a case study

Unraveling genetic population structure is challenging in species potentially characterized by large population size and high dispersal rates, often resulting in weak genetic differentiation. Genotyping a large number of samples can improve the detection of subtle genetic structure, but this may substantially increase sequencing cost and downstream bioinformatics computational time. To overcome this challenge, alternative, cost‐effective sequencing approaches, namely Pool‐seq and Rapture, have been developed. We empirically measured the power of resolution and congruence of these two methods in documenting weak population structure in nonmodel species with high gene flow comparatively to a conventional genotyping‐by‐sequencing (GBS) approach. For this, we used the American lobster (Homarus americanus) as a case study. First, we found that GBS, Rapture, and Pool‐seq approaches gave similar allele frequency estimates (i.e., correlation coefficient over 0.90) and all three revealed the same weak pattern of population structure. Yet, Pool‐seq data showed F_ST estimates three to five times higher than GBS and Rapture, while the latter two methods returned similar F_ST estimates, indicating that individual‐based approaches provided more congruent results than Pool‐seq. We conclude that despite higher costs, GBS and Rapture are more convenient approaches to use in the case of species exhibiting very weak differentiation. While both GBS and Rapture approaches provided similar results with regard to estimates of population genetic parameters, GBS remains more cost‐effective in project involving a relatively small numbers of genotyped individuals (e.g., <1,000). Overall, this study illustrates the complexity of estimating genetic differentiation and other summary statistics in complex biological systems characterized by large population size and migration rates.     

Pathogenic and genetic variability among Colletotrichum gloeosporioides isolates from different yam hosts in the agroecological zones in Nigeria

Anthracnose, caused by Colletotrichum gloeosporioides Penz., is the most severe foliar disease of water yam (Dioscorea alata) worldwide. Population genetic analyses can yield useful insights into the evolutionary potential of C. gloeosporioides and thus lead to the development of appropriate disease management strategies. The genetic structure of C. gloeosporioides populations from yam and non‐yam hosts in three agroecological zones of Nigeria was investigated. Microsatellite‐primed polymerase chain reaction (MP‐PCR), virulence phenotyping using five putative D. alata differentials, cross‐inoculation tests, and the presence/absence of a Glomerella teleomorph in yam fields were used to infer the evolutionary potential of C. gloeosporioides on yam. We observed high genotypic diversity (GD = 0.99 to 1.00) for populations from all hosts and agroecological zones, with multiple pathogen genotypes in individual anthracnose lesions. Genetic differentiation was low among pathogen populations from different hosts (G_ST = 0.10, θ = 0.034), and agroecological zones (G_ST = 0.04, θ = 0.018), indicating limited host differentiation and significant gene flow. No evidence was found for the existence of C. gloeosporioides f. sp. alatae reported in previous studies. The fungus was recovered from several non‐yam host species commonly found in yam fields but non‐yam isolates caused only mild to moderate symptoms on yam. Eighteen C. gloeosporioides virulence phenotypes were identified among 217 isolates but there was a weak correlation (r = 0.02, P = 0.40) between virulence phenotype and MP‐PCR haplotype. Consistent with the above findings, we observed for the first time the Glomerella teleomorph on anthracnose‐infected yam plants in Nigeria, indicating that sexual recombination might play an important role in anthracnose epidemics on yam. The implications of these findings for C. gloeosporioides evolutionary potential and anthracnose resistance breeding are discussed.