Effect of ectomycorrhizal fungi on chestnut ink disease

 Seedlings of Castanea sativa were inoculated at transplanting time with four ectomycorrhizal (ECM) fungi, Laccaria laccata, Hebeloma crustuliniforme, H. sinapizans and Paxillus involutus. At the end of the first vegetative season, 7 months after sowing, half of the mycorrhizal and nonmycorrhizal seedlings were challenged with a zoospore suspension of Phytophthora cambivora and the other half with P. cinnamomi. Five months later, mycorrhizal plants infected with P. cambivora or P. cinnamomi showed no sign of pathogen infection. The ECM fungi increased plant biomass also in the presence of the pathogen. Mycorrhizal seedlings inoculated with the pathogens showed greater shoot and root development than nonmycorrhizal chestnut plants. All the fungi tested reduced the negative effect of the ink disease pathogens on the plant host in vivo. The mechanisms by which the ECM fungi protect chestnut seedlings are discussed. Accepted: 20 May 1999     

陕西实生板栗居群遗传多样性研究

利用超薄平板聚丙烯酰胺等电聚焦技术对陕西板栗4个实生居群,8个酶系统的20个位点进行了遗传多样性及遗传结构分析,结果表明：4个居群中以宝鸡居群遗传多样性最高,其P为80．0％,Ho,He分别为0．478和0．343,4个居群的居群遗传分化度Gst为6．2％,平均总遗传多样性为0．3372,总遗传多样性的93．8％属于居群内的遗传变异,聚类分析结果表明,以秦岭为界可以分为秦岭以南与秦岭以北2个略有差异的板栗自然亚分布区。     

Adaptive evolution of the Populus tremula photoperiod pathway

Perennial plants monitor seasonal changes through changes in environmental conditions such as the quantity and quality of light and genes in the photoperiodic pathway are known to be involved in controlling these processes. Here, we examine 25 of genes from the photoperiod pathway in Populus tremula (Salicaceae) for signatures of adaptive evolution. Overall, levels of synonymous polymorphism in the 25 genes are lower than at control loci selected randomly from the genome. This appears primarily to be caused by lower levels of synonymous polymorphism in genes associated with the circadian clock. Natural selection appears to play an important role in shaping protein evolution at several of the genes in the photoperiod pathways, which is highlighted by the fact that approximately 40% of the genes from the photoperiod pathway have estimates of selection on nonsynonymous polymorphisms that are significantly different from zero. A surprising observation we make is that circadian clock-associated genes appear to be over-represented among the genes showing elevated rates of protein evolution; seven genes are evolving under positive selection and all but one of these genes are involved in the circadian clock of Populus.     

三种猕猴桃根腐病致病菌多重实时定量PCR检测技术的建立及应用

[背景]近年来,随着猕猴桃种植面积的不断扩大,病害的频繁发生已逐渐影响猕猴桃的产量和品质。恶疫霉(Phytophthora cactorum)、樟疫霉(P.cinnamomi)和雪松疫霉(P.lateralis)是一类可以引起猕猴桃根腐病的致病疫霉菌。[目的]建立并优化可以同时检测3种致病疫霉的多重实时定量检测技术,并调查猕猴桃主要产区的致病菌分布情况。[方法]基于Ypt1 (ras-related protein gene)基因设计恶疫霉、樟疫霉和雪松疫霉的特异性TaqMan探针和引物,建立并优化多重实时荧光定量PCR检测体系。利用近缘种检验检测体系特异性并进行灵敏度测试,应用该检测体系分析猕猴桃主要产区根际土壤中3种致病疫霉的Yt1基因含量。[结果]供测试的11个恶疫霉近缘种、11个樟疫霉近缘种、13个雪松疫霉近缘种及非目标菌种DNA样品中均无荧光信号,反应结果为阴性,而在恶疫霉、樟疫霉和雪松疫霉DNA样品中分别检测出HEX、FAM和ROX荧光信号,反应结果为阳性。三种疫霉的检测灵敏度均达到100fg。此外,通过对猕猴桃主产区陕西省周至县和眉县果园共166份土壤样品的检测发现,恶疫霉的分布最广泛且Ypt1基因含量最高,樟疫霉和雪松疫霉则相对较少。[结论]建立的猕猴桃根腐病致病疫霉多重实时定量检测体系特异性强、灵敏度高,适合于恶疫霉、樟疫霉和雪松疫霉的检测及定量分析。该技术可为猕猴桃疫霉病害的早期诊断、监测及预防提供指导。     

Role of Proanthocyanidins in Resistance of the Legume Swainsona formosa to Phytophthora cinnamomi

Reduced flower pigmentation in the legume Swainsona formosa is associated with increased susceptibility to Phytophthora cinnamomi and other soil‐borne pathogens. This study aimed to identify the mechanism for these differences in susceptibility. Chemical analyses of stem tissues that had been previously inoculated with P. cinnamomi revealed that neither anthocyanin nor total phenolic content increased with infection. Such results suggested that observed differences in susceptibility, as indicated by flower colour, were related to preformed rather than induced stem chemistry. Acetone extracts from healthy, uninfected stem tissues of a red‐flowered line were highly toxic to the fungus, while extracts from a white‐flowered line were non‐toxic and those from a pink‐flowered line were intermediate in toxicity and this was correlated with the total phenolic and proanthocyanidin concentration of the extracts. Precipitation of proanthocyanidins with bovine serum albumen removed the toxicity of the extracts. It was concluded that differences in the proanthocyanidin content of tissues contributed to the differences in disease susceptibility of plants with different flower colours.     

Rapid genetic divergence in response to 15 years of simulated climate change

Genetic diversity may play an important role in allowing individual species to resist climate change, by permitting evolutionary responses. Our understanding of the potential for such responses to climate change remains limited, and very few experimental tests have been carried out within intact ecosystems. Here, we use amplified fragment length polymorphism (AFLP) data to assess genetic divergence and test for signatures of evolutionary change driven by long‐term simulated climate change applied to natural grassland at Buxton Climate Change Impacts Laboratory (BCCIL). Experimental climate treatments were applied to grassland plots for 15 years using a replicated and spatially blocked design and included warming, drought and precipitation treatments. We detected significant genetic differentiation between climate change treatments and control plots in two coexisting perennial plant study species (Festuca ovina and Plantago lanceolata). Outlier analyses revealed a consistent signature of selection associated with experimental climate treatments at individual AFLP loci in P. lanceolata, but not in F. ovina. Average background differentiation at putatively neutral AFLP loci was close to zero, and genomewide genetic structure was associated neither with species abundance changes (demography) nor with plant community‐level responses to long‐term climate treatments. Our results demonstrate genetic divergence in response to a suite of climatic environments in reproductively mature populations of two perennial plant species and are consistent with an evolutionary response to climatic selection in P. lanceolata. These genetic changes have occurred in parallel with impacts on plant community structure and may have contributed to the persistence of individual species through 15 years of simulated climate change at BCCIL.     

Cytokinins in shoots of the chestnut tree

Five cytokinins, trans-zeatin, 9-β-d-ribosyl-trans-zeatin, O-β-d-glucosyl-trans-zeatin, N⁶-(3-methyl-but-2-enyl)adenine and N⁶-(3-methyl-but-2-enyl)adenosine were identified in shoots of the chestnut tree.     

A methodology to evaluate disease severity: a case study of chestnut blight in El Bierzo region (northwestern Spain)

Correct knowledge of the incidence and severity of disease is essential for implementation of timely and effective management control strategies. In this article, multiple correspondence analysis (MCA) is applied to evaluate the severity of chestnut blight incited by the ascomyceteous fungus Cryphonectria parasitica. This economically important bark disease leads to the loss of an important part of the chestnut production and the progressive death of the tree. A total of 7240 living European chestnut (Castanea sativa) trees across 452 plots were surveyed in El Bierzo, NW Spain. For each tree, the main stem and canopy were visually assessed for signs of the pathogen and/or symptoms of the disease and the extent of the disease was classified on a qualitative ordinal scale consisting of six levels. The statistical procedure is useful because it quickly analyses measurable, discrete observations from assessed individuals to provide a disease severity measure related to tree features and disease extension inside the tree. The results indicated that the penetration of the pathogen is located in the lower part of the crown and spreads to the tips of the branches in the upper part of the crown. Thus, our results suggest that man‐made wounds, when the tree was grafted or pruned, are the main channel of pathogen penetration in El Bierzo region. Disease severity estimates and incidence data for C. parasitica across the region were compared. From the perspective of the management and control of the disease, a disease severity value provides a more accurate indication of the scenario of the disease in a region than presence or absence data alone.     

Acclimation of Russian forests to recent changes in climate

Assessments made over the past few decades have suggested that boreal forests may act as a sink for atmospheric carbon dioxide. However, the fate of the newly accumulated carbon in the living forest biomass is not well understood, and the estimates of carbon sinks vary greatly from one assessment to another. Analysis of remote sensing data has indicated that the carbon sinks in the Russian forests are larger than what has been estimated from forest inventories. In this study, we show that over the past four decades, the allometric relationships among various plant parts have changed in the Russian forests. To this end, we employ two approaches: (1) analysis of the database, which contains 3196 sample plots; and (2) application of developed models to forest inventory data. Within the forests as a whole, when assessed at the continental scale, we detect a pronounced increase in the share of green parts (leaves and needles). However, there is a large geographical variation. The shift has been largest within the European Russia, where summer temperatures and precipitation have increased. In the Northern Taiga of Siberia, where the climate has become warmer but drier, the fraction of the green parts has decreased while the fractions of aboveground wood and roots have increased. These changes are consistent with experiments and mathematical models that predict a shift of carbon allocation to transpiring foliage with increasing temperature and lower allocation with increasing soil drought. In light of this, our results are a possible demonstration of the acclimation of trees to ongoing warming and changes in the surface water balance. Independent of the nature of the observed changes in allometric ratios, the increase in the share of green parts may have caused a misinterpretation of the satellite data and a systematic overestimation by remote sensing methods of the carbon sink for living biomass of the Russian forest.     

Stay in shape: Assessing the adaptive potential of shell morphology and its sensitivity to temperature in the invasive New Zealand mud snail Potamopyrgus antipodarum through phenotypic plasticity and natural selection in Europe

Climate change may force organisms to adapt genetically or plastically to new environmental conditions. Invasive species show remarkable potential for rapid adaptation. The ovoviviparous New Zealand mud snail (NZMS), Potamopyrgus antipodarum, has successfully established across Europe with two clonally reproducing mitochondrial lineages since its arrival in the first half of the 19th century. Its remarkable variation in shell morphology was shown to be fitness relevant. We investigated the effects of temperature on shell morphology across 11 populations from Germany and the Iberian Peninsula in a common garden across three temperatures. We analyzed size and shape using geometric morphometrics. For both, we compared reaction norms and estimated heritabilities. For size, the interaction of temperature and haplotype explained about 50% of the total variance. We also observed more genotype by environment interactions indicating a higher degree of population differentiation than in shape. Across the three temperatures, size followed the expectations of the temperature‐size rule, with individuals growing larger in cold environments. Changes in shape may have compensated for changes in size affecting space for brooding embryos. Heritability estimates were relatively high. As indicated by the very low coefficients of variation for clonal repeatability (CV _A ), they can probably not be compared in absolute terms. However, they showed some sensitivity to temperature, in haplotype t more so than in z, which was only found in Portugal. The low CV _A values indicate that genetic variation among European populations is still restricted with a low potential to react to selection. A considerable fraction of the genetic variation was due to differences between the clonal lineages. The NZMS has apparently not been long enough in Europe to accumulate significant genetic variation relevant for morphological adaptation. As temperature is obviously not the sole factor influencing shell morphology, their interaction will probably not be a factor limiting population persistence under a warming climate in Europe.     

Stability of genetic variance and covariance for reproductive characters in the face of climate change in a wild bird population

Global warming has had numerous effects on populations of animals and plants, with many species in temperate regions experiencing environmental change at unprecedented rates. Populations with low potential for adaptive evolutionary change and plasticity will have little chance of persistence in the face of environmental change. Assessment of the potential for adaptive evolution requires the estimation of quantitative genetic parameters, but it is as yet unclear what impact, if any, global warming will have on the expression of genetic variances and covariances. Here we assess the impact of a changing climate on the genetic architecture underlying three reproductive traits in a wild bird population. We use a large, long-term, data set collected on great tits (Parus major) in Wytham Woods, Oxford, and an 'animal model' approach to quantify the heritability of, and genetic correlations among, laying date, clutch size and egg mass during two periods with contrasting temperature conditions over a 40-year period (1965-1988 [cooler] vs. 1989-2004 [warmer]). We found significant additive genetic variance and heritability for all traits under both temperature regimes. We also found significant negative genetic covariances and correlations between clutch size and egg weight during both periods, and among laying date and clutch size in the colder years only. The overall G matrix comparison among periods, however, showed only a minor difference among periods, thus suggesting that genotype by environment interactions are negligible in this context. Our results therefore suggest that despite substantial changes in temperature and in mean laying date phenotype over the last decades, and despite the large sample sizes available, we are unable to detect any significant change in the genetic architecture of the reproductive traits studied.     

Canopy recovery after drought dieback in holm-oak Mediterranean forests of Catalonia (NE Spain)

Climate change is likely to produce more frequent and longer droughts in the Mediterranean region, like that of 1994, which produced important changes in the Quercus ilex forests, with up to 76% of the trees showing complete canopy dieback. At the landscape level, a mosaic of responses to the drought was observed, linked to the distribution of lithological substrates. Damage to the dominant tree species (Q. ilex) and the most common understorey shrub (Erica arborea) was more noticeable on the compact substrates (breccia) than on the fissured ones (schist). This result was consistent with observations documenting deeper root penetration in schist than in breccia materials, allowing the plants growing on fissured substrates to use water from deeper soil levels. Smaller plants were more vulnerable to drought than larger plants in the trees, but not in the shrubs. Overall, Q. ilex was more affected than E. arborea. The resilience of the system was evaluated from the canopy recovery 1 year after the episode. Stump and crown resprouting was fairly extensive, but the damage pattern in relation to substrate, plant size, and species remained similar. The effect of recurrent drought episodes was studied on vegetation patches of Q. ilex located on mountain slopes and surrounded by bare rock. We observed that plants that resprouted weakly after a previous drought in 1985 were more likely to die or to produce poor regeneration in 1995 than plants that had resprouted vigorously. Vegetation patches located on the lower part of the slope were also less damaged than patches situated uphill. The study provides evidence of relevant changes in forest canopy as a consequence of extreme climate events. The distribution of this effect across the landscape is mediated by lithological substrate, causing patchy patterns. The results also support the hypothesis that recurrent droughts can produce a progressive loss of resilience, by depleting the ability of surviving plants to regenerate.     

Mammalian responses to Middle Holocene climatic change in the Great Basin of the western United States

In spite of decades of intense research directed toward understanding the climates and ecology of the Great Basin (western United States) during the past 10,000 years, the responses of mammals to the extreme aridity of the Middle Holocene (c. 8000–5000 years ago) in this region have been poorly understood. Using a well‐dated small mammal sequence from Homestead Cave, north‐central Utah, I show that the Middle Holocene small mammal faunas of this area underwent a decrease in species richness and evenness, driven largely by a series of local extinctions and near‐extinctions coupled with a dramatic increase in the abundance of taxa well‐adapted to xeric conditions. At the end of this period, some taxa that require relatively mesic habitats began to increase in abundance immediately, others did not rebound in abundance until several thousand years later, while still others have not returned at all. This suite of responses has been difficult to detect because climatic change at the beginning of the Middle Holocene was so much more substantial than that which occurred toward its end.     

天然常绿阔叶林改造为板栗林对土壤有机碳库的影响

天然林改造为人工林后,由于植被覆盖类型和经营管理措施发生改变,从而显著影响土壤有机碳库的特征.测定浙江省临安市相邻的天然常绿阔叶林和板栗林(板栗林由常绿阔叶林改造而来,集约经营10年)表层(0～20 cm)和亚表层(20～40 cm)土壤有机碳储量和不同形态活性有机碳库,用固态核磁共振方法分析土壤有机碳的化学结构特征,研究天然常绿阔叶林改造为板栗林对土壤有机碳库的影响.结果表明: 常绿阔叶林改造为板栗林后,土壤表层有机碳储量、水溶性有机碳、热水溶性有机碳、微生物生物量碳和易氧化碳含量分别下降19.7%、34.4%、25.8%、30.4%和25.2%,土壤亚表层的各指标分别下降13.5%、38.4%、19.8%、34.1%和22.2%.土壤表层烷氧碳含量、芳香碳含量以及芳香度显著降低,而烷基碳含量、羰基碳含量以及A/O-A值均显著增加;土壤亚表层烷氧碳含量显著降低,而烷基碳含量和A/O-A值显著增加,而芳香碳含量、羰基碳含量以及芳香度无显著变化.天然常绿阔叶林改造为板栗林并长期集约经营后,土壤有机碳储量和活性有机碳库均显著下降,有机碳的化学结构发生显著变化.     

Space-for-time substitutions in climate change ecology and evolution

In an epoch of rapid environmental change, understanding and predicting how biodiversity will respond to a changing climate is an urgent challenge. Since we seldom have sufficient long-term biological data to use the past to anticipate the future, spatial climate–biotic relationships are often used as a proxy for predicting biotic responses to climate change over time. These ‘space-for-time substitutions’ (SFTS) have become near ubiquitous in global change biology, but with different subfields largely developing methods in isolation. We review how climate-focussed SFTS are used in four subfields of ecology and evolution, each focussed on a different type of biotic variable – population phenotypes, population genotypes, species' distributions, and ecological communities. We then examine the similarities and differences between subfields in terms of methods, limitations and opportunities. While SFTS are used for a wide range of applications, two main approaches are applied across the four subfields: spatial in situ gradient methods and transplant experiments. We find that SFTS methods share common limitations relating to (i) the causality of identified spatial climate–biotic relationships and (ii) the transferability of these relationships, i.e. whether climate–biotic relationships observed over space are equivalent to those occurring over time. Moreover, despite widespread application of SFTS in climate change research, key assumptions remain largely untested. We highlight opportunities to enhance the robustness of SFTS by addressing key assumptions and limitations, with a particular emphasis on where approaches could be shared between the four subfields.     

Sensitivity of Siberian larch forests to climate change

The Northern Hemisphere's boreal forests, particularly the Siberian boreal forest, may have a strong effect on Earth's climate through changes in dominant vegetation and associated regional surface albedo. We show that warmer climate will likely convert Siberia's deciduous larch (Larix spp.) to evergreen conifer forests, and thus decrease regional surface albedo. The dynamic vegetation model, FAREAST, simulates Russian boreal forest composition and was used to explore the feedback between climate change and forest composition at continental, regional, and local scales. FAREAST was used to simulate the impact of changes in temperature and precipitation on total and genus‐level biomass at sites across Siberia and the Russian Far East (RFE), and for six high‐ and low‐diversity regions. Model runs with and without European Larch (Larix decidua) included in the available species pool were compared to assess the potential for this species, which is adapted to warmer climate conditions, to mitigate the effects of climate change, especially the shift to evergreen dominance. At the continental scale, when temperature is increased, larch‐dominated sites become vulnerable to early replacement by evergreen conifers. At the regional and local scales, the diverse Amur region of the RFE does not show a strong response to climate change, but the low‐diversity regions in central and southern Siberia have an abrupt vegetation shift from larch‐dominated forest to evergreen‐conifer forest in response to increased temperatures. The introduction of L. decidua prevents the collapse of larch in these low‐diversity areas and thus mitigates the response to warming. Using contemporary MODIS albedo measurements, we determined that a conversion from larch to evergreen stands in low‐diversity regions of southern Siberia would generate a local positive radiative forcing of 5.1±2.6 W m^?2. This radiative heating would reinforce the warming projected to occur in the area under climate change.     

Response of African humid tropical forests to recent rainfall anomalies

During the last decade, strong negative rainfall anomalies resulting from increased sea surface temperature in the tropical Atlantic have caused extensive droughts in rainforests of western Amazonia, exerting persistent effects on the forest canopy. In contrast, there have been no significant impacts on rainforests of West and Central Africa during the same period, despite large-scale droughts and rainfall anomalies during the same period. Using a combination of rainfall observations from meteorological stations from the Climate Research Unit (CRU; 1950–2009) and satellite observations of the Tropical Rainfall Measuring Mission (TRMM; 1998–2010), we show that West and Central Africa experienced strong negative water deficit (WD) anomalies over the last decade, particularly in 2005, 2006 and 2007. These anomalies were a continuation of an increasing drying trend in the region that started in the 1970s. We monitored the response of forests to extreme rainfall anomalies of the past decade by analysing the microwave scatterometer data from QuickSCAT (1999–2009) sensitive to variations in canopy water content and structure. Unlike in Amazonia, we found no significant impacts of extreme WD events on forests of Central Africa, suggesting potential adaptability of these forests to short-term severe droughts. Only forests near the savanna boundary in West Africa and in fragmented landscapes of the northern Congo Basin responded to extreme droughts with widespread canopy disturbance that lasted only during the period of WD. Time-series analyses of CRU and TRMM data show most regions in Central and West Africa experience seasonal or decadal extreme WDs (less than −600 mm). We hypothesize that the long-term historical extreme WDs with gradual drying trends in the 1970s have increased the adaptability of humid tropical forests in Africa to droughts.     

Vulnerability of carbon storage in North American boreal forests to wildfires during the 21st century

The boreal forest contains large reserves of carbon. Across this region, wildfires influence the temporal and spatial dynamics of carbon storage. In this study, we estimate fire emissions and changes in carbon storage for boreal North America over the 21st century. We use a gridded data set developed with a multivariate adaptive regression spline approach to determine how area burned varies each year with changing climatic and fuel moisture conditions. We apply the process‐based Terrestrial Ecosystem Model to evaluate the role of future fire on the carbon dynamics of boreal North America in the context of changing atmospheric carbon dioxide (CO₂) concentration and climate in the A2 and B2 emissions scenarios of the CGCM2 global climate model. Relative to the last decade of the 20th century, decadal total carbon emissions from fire increase by 2.5–4.4 times by 2091–2100, depending on the climate scenario and assumptions about CO₂ fertilization. Larger fire emissions occur with warmer climates or if CO₂ fertilization is assumed to occur. Despite the increases in fire emissions, our simulations indicate that boreal North America will be a carbon sink over the 21st century if CO₂ fertilization is assumed to occur in the future. In contrast, simulations excluding CO₂ fertilization over the same period indicate that the region will change to a carbon source to the atmosphere, with the source being 2.1 times greater under the warmer A2 scenario than the B2 scenario. To improve estimates of wildfire on terrestrial carbon dynamics in boreal North America, future studies should incorporate the role of dynamic vegetation to represent more accurately post‐fire successional processes, incorporate fire severity parameters that change in time and space, account for human influences through increased fire suppression, and integrate the role of other disturbances and their interactions with future fire regime.