Local and regional determinants of stream fish assemblage structure: inferences based on taxonomic vs. functional groups

Aim  To examine the roles of local and regional environmental variables and biotic interactions in determining the structure of local stream fish assemblages, and to compare results derived from analyses based on taxonomic and functional groups.
Location  Texas, USA.
Methods  Species abundance data were compiled for 157 stream fish assemblages in several river basins across Texas. Species were condensed into functional groups based on trophic and life-history characteristics. Local and regional environmental variables were either measured at each location or determined from scale maps and public-access data bases. The original taxonomic and functional group data sets were analysed using similarity indices, null models of co-occurrence, and direct and indirect ordination techniques. Results derived from taxonomic and functional group data sets are compared.
Results  Inferences regarding the relative roles of local and larger-scale factors in determining stream fish assemblage structure differ dramatically between analyses of taxonomic and functional groups. Taxonomic analyses suggest a prominent role of regional-scale environmental factors, and local assemblages sorted according to a biogeographic pattern. Functional group analyses suggest almost equal roles of factors representative of local and larger scales, and assemblages were distinguished by a habitat template irrespective of geographic region.
Main conclusions  The structure of local stream fish assemblages is determined ultimately by factors representing multiple scales, with the relative importance of each depending on the biological unit employed (species or functional groups). We suggest that analyses using functional groups can more directly infer ecological responses to environmental variation, and therefore may provide a more fruitful avenue for developing and testing ecological theory of community organization across biogeographic scales.     

Toward river health assessment using species distributional modeling

The reference condition of a river ecosystem is often used as a benchmark against which restoration activities are framed. However, the reference condition approach is not suitable for all river health assessments given undisturbed reference sites similar to a test site may not exist. We tested the ability of applying individual Species Distribution Models (SDMs) to predict the “natural” fish assemblages in a regulated coastal Australian river. Environmental data and fish collections from training sites were used to generate predictive models for 21 species. Model accuracy was high with the area under the receiver operating curve greater than 0.80 for the majority of species. The SDMs were then used to determine the natural fish assemblages and the condition of the sites in the test river was then assessed as the observed to expected species ratio (O/E). We expected that the O/E ratio would decline upstream through a series of weirs that created barriers to fish passage. Results confirmed that an inverse relationship existed between the number of weirs present on the test river and the O/E ratio, largely due to the decline in diadromous species. Our study clearly demonstrates the usefulness of the SDM approach to riverine health assessment in situations where undisturbed reference sites do not exist.     

The influence of scale and geography on relationships between stream community composition and landscape variables: description and prediction

SUMMARY 1. We analysed an existing database of macroinvertebrates and fish in the context of a newly established geographical information system (GIS) of physical features to determine the relationships between stream community composition and physical factors measured at three landscape scales – catchment, reach and bedform. Both an exploratory (concordance analysis) and a predictive ( ausrivas ) approach were used.
2. The environmental variables that most successfully accounted for variation in macroinvertebrate assemblages were mainly 'natural' and at the catchment-scale (relief ratio, basin diameter, etc.) but the human-induced physical setting of percentage of pasture in the riparian zone was also influential. For fish, 'natural' variables were also dominant, but these were mostly at the bedform or reach scales and land use featured strongly.
3. Geographic location accounted for some of the variation in invertebrate assemblages, partly because geography and influential conditions/resources are correlated but also because different species may have evolved in different places and have not colonised every 'ecologically appropriate' location. Geographic location was not influential in accounting for variation in assemblages of strongly flying invertebrates, supporting the hypothesis that organisms having high dispersal potential can be expected to break down geographic barriers more readily than those with poor dispersal powers. In accord with what is known about the local evolution and restricted distributions of native and exotic species, history (reflected in geography) appeared to account for some variation in fish assemblages.
4. Given their different mathematical bases, the fact that exploratory and predictive analyses yielded similar results provides added confidence to our conclusions.     

Comparative assessment of indices of freshwater habitat conditions using different invertebrate taxon sets

Monitoring changes in population levels of a wide range of species in biodiversity research and conservation requires practical, easy-to-use and efficient assessment and monitoring methods. Dragonflies (Insecta: Odonata) are a valuable tool for assessing aquatic systems and have been used as indicators of ecological health, ecological integrity, and environmental change, including climatic change, as well as indicators of habitat recovery. We field-tested a freshwater ecological integrity index, the Dragonfly Biotic Index (DBI), based on dragonfly assemblages at the local scale, and compared the DBI to a biodiversity index (average taxonomic distinctness, AvTD) as well as to a standard freshwater benthic macroinvertebrate-based freshwater health index (South African Scoring System, using Average Score Per Taxon, ASPT). We sampled 20 river sites, selected a priori. Adult dragonflies and benthic macroinvertebrates were collected using standardized methods. Environmental variables were collected in situ, and water samples taken. Temperature and pH were the most important physical environmental variables in explaining the assemblage structure, and we found significant abiotic–biotic relationships, as well as biotic–biotic relationships. Overall, dragonflies were more sensitive to changes in river condition than were macroinvertebrates, in part because they were responding at the species rather than higher taxonomic level. AvTD scores did not show any significant relationship with changes in river condition. Furthermore, sites with low biotic scores (indicating disturbance) had high AvTD values. In contrast, DBI site value and ASPT scores were highly significantly correlated. We conclude that dragonfly assemblages in the form of a DBI are an excellent tool for environmental assessment and monitoring freshwater biodiversity, with the potential to replace labour-intensive benthic macroinvertebrate-based freshwater quality assessments, such as SASS.     

Determinants of fine‐scale homogenization and differentiation of native freshwater fish faunas in a Mediterranean Basin: implications for conservation

Aim Increasing threats to freshwater biodiversity are rapidly changing the distinctiveness of regional species pools and local assemblages. Biotic homogenization/differentiation processes are threatening the integrity and persistence of native biodiversity patterns at a range of spatial scales and pose a challenge for effective conservation planning. Here, we evaluate the extent and determinants of fine‐scale alteration in native freshwater fish assemblages among stream reaches throughout a large river basin and consider the implications of these changes for the long‐term conservation of native fishes. Location Guadiana River basin (South‐Western Iberian Peninsula). Methods We quantified the magnitude of change in compositional similarity between observed and reference assemblages and its potential effect on natural patterns of compositional distinctiveness. Reference assemblages were defined as the native species expected to occur naturally (in absence of anthropogenic alterations) and were reconstructed using a multivariate adaptive regression splines predictive model. We also evaluated the role of habitat degradation and introduced species as determinants of biotic homogenization/differentiation. Results We found a significant trend towards homogenization for native fish assemblages. Changes in native fish distributions led to the loss of distinctiveness patterns along natural environmental gradients. Introduced species were the most important factor explaining the homogenization process. Homogenization of native assemblages was stronger in areas close to reservoirs and in lowland reaches where introduced species were more abundant. Main conclusions The implementation of efficient conservation for the maintenance of native fish diversity is seriously threatened by the homogenization processes. The identification of priority areas for conservation is hindered by the fact that the most diverse communities are vanishing, which would require the selection of broader areas to adequately protect all the species. Given the principal role that introduced species play in the homogenization process and their relation with reservoirs, special attention must be paid to mitigating or preventing these threats.     

The influence of stream invertebrate composition at neighbouring sites on local assemblage composition

1. The composition of freshwater invertebrate assemblages at a location is determined by a range of physico‐chemical and biotic factors in the local environment, as well as larger‐scale spatial factors such as sources of recruits. We assessed the relative importance of the species composition of local neighbourhoods and proximal environmental factors on the composition of invertebrate assemblages. 2. Macroinvertebrate assemblages were sampled at 188 running‐water sites in the catchment of the River Rede, north‐east England. A total of 176 species were recorded. 3. Environmental data, in the form of 13 biotic and abiotic measurements that described stream physical structure, aquatic vegetation and water characteristics, were recorded for each site. Detrended correspondence analysis was then used to simplify nine of these stream environmental variables to create an index of stream structure. 4. The species composition of the invertebrate assemblages was related to the environmental variables, using an information theoretic approach. The impact of the species composition of neighbouring sites on each site was determined using Moran's I and autoregressive modelling techniques. 5. Species composition was primarily associated with water pH and stream structure. The importance of the species composition of neighbouring sites in determining local species assemblages differed markedly between taxa. The autoregressive component was low for Coleoptera, intermediate for Trichoptera and Plecoptera, and high for Ephemeroptera. 6. We hypothesise that the observed differences in the autoregressive component amongst these orders reflects variation in their dispersal abilities from neighbouring sites.     

Community concordance between the fish and aquatic birds of lakes in northern Alberta, Canada: the relative importance of environmental and biotic factors

1. Community concordance measures the degree to which patterns in community structure in a set of sites are similar between two different taxonomic groups. Although seldom incorporated into studies of lake ecosystems, aquatic birds can be influenced by the same environmental features of lakes which affect fish and invertebrates, and can interact with these organisms directly as predators, competitors or prey. We surveyed lakes in north-central Alberta, Canada, to determine if co-occurring fish and aquatic bird assemblages displayed concordance, and assessed the relative importance of environmental and biotic factors in contributing to observed concordance.
2. In 41 lakes (3–305 ha), we encountered seven species of fish and thirty-one avian taxa which subsequently were used in multivariate analyses. Fish assemblages dominated by large piscivores were in large deep lakes, whereas fishless lakes and lakes with only small-bodied fish were small and shallow, and thus, prone to winter hypoxia. Bird assemblages displayed three general patterns: (a) small shallow lakes supported a 'core' of widespread species (between three and eight species per lake); (b) large, deep lakes supported more species (between 11 and 16), including large, aerially foraging piscivores; and (c) large, shallow lakes supported the most species (between 15 and 23), including many ducks.
3. Randomization tests of matrix concordance and Mantel tests both showed that fish and bird assemblages were significantly concordant. Concordance reflected the fact that both groups were strongly affected by the same key environmental factors, principally lake size and maximum depth, and to a lesser extent, productivity and geographic isolation. Direct interactions between birds and fish, such as predation and competition, appeared to play much smaller roles in shaping the two assemblages.     

Bacterial and archaeal assemblages in sediments of a large shallow freshwater lake, Lake Taihu, as revealed by denaturing gradient gel electrophoresis

Aims:  To explore the association of microbial community structure with the development of eutrophication in a large shallow freshwater lake, Lake Taihu.
Methods and Results:  The bacterial and archaeal assemblages in sediments of different lake areas were analysed using denaturing gradient gel electrophoresis (DGGE) of amplified 16S rDNA fragments. The bacterial DGGE profiles showed that eutrophied sites, grass-bottom areas and relatively clean sites with a eutrophic (albeit dredged) site are three respective clusters. Fifty-one dominant bacterial DGGE bands were detected and 92 corresponding clones were sequenced, most of which were affiliated with bacterial phylotypes commonly found in freshwater ecosystems. Actinobacteria were detected in the centre of the lake and not at eutrophied sites whereas the opposite was found with respect to Verrucomicrobiales . Twenty-five dominant archaeal DGGE bands were detected and 31 corresponding clones were sequenced, most of which were affiliated with freshwater archaeal phylotypes.
Conclusions:  The bacterial community structures in the sediments of different areas with similar water quality and situation tend to be similar in Taihu Lake.
Significance and Impact of the Study:  This study may expand our knowledge on the relationship between the overall microbial assemblages and the development of eutrophication in the shallow freshwater lake.     

Structure and Dynamics of a Benthic Invertebrate Community in an Intertidal Area of the Tagus Estuary, Western Portugal: A Six Year Data Series

A predictive model, incorporating macroinvertebrate and environmental data, similar to that developed for Australian rivers (AUSRIVAS) and British rivers (RIVPACS) was constructed using a dataset collected from 23 reference (least altered) wetlands on the Swan Coastal Plain, Western Australia, sampled in summer and spring, 1989 and spring, 1990. Four main groups of reference wetlands were identified by UPGMA classification (using the Bray–Curtis dissimilarity measure). Distinguishing environmental variables identified by Stepwise Multiple Discriminant Function Analysis were: calcium, colour (gilvin), latitude, longitude, sodium and organic carbon. Observed to expected ratios of taxa with a >50% chance of occurrence (OE50) derived from the model for a suite of 23 test wetlands sampled in spring, 1997, were significantly correlated with pH and the depth of the sampling sites. Greater discrimination between the test wetlands was provided by the OE50 ratios than either raw richness (number of families) or a biotic index (SWAMPS). Results obtained for a subset of 11 test wetlands sampled with both a rapid bioassessment protocol (incorporating field picking of 200 invertebrates collected in 2 min sweeps from selected habitats) and a semi-quantitative protocol (incorporating laboratory picking of all invertebrates collected in sweeps along 10 m transects at randomly allocated sites) were not significantly different, indicating that the former could be used to reduce the time and costs associated with macroinvertebrate-based wetland monitoring programs. In addition to providing an objective method of assessing wetland condition, predictive modelling provides a list of taxa expected to occur under reference conditions, which can be used as a target in wetland restoration programs. The probable impediment to widespread adoption of predictive modelling for wetland bioassessment is the need to produce models tailored to specific geographic regions and specific climatic conditions. This may incur significant costs in countries, such as Australia, which span a wide range of climatic zones.     

Local and ecoregion effects on fish assemblage structure in tributaries of the Rio Paraíba do Sul, Brazil

1.  We examined the effects of physical and chemical habitat variables and ecoregions on species occurrence and fish assemblage structure in streams of the Paraíba do Sul basin, in southeast Brazil.
2.  Fish and environmental data were collected from 42 sites on 26 first to fourth order streams (1 : 50 000 map scale) in three ecoregions. The sites occurred in one valley and two plateau ecoregions at altitudes of 40–1080 m and distances of 0.1–188 km from the main channel of the Rio Paraíba do Sul. Physical habitat (substratum, riparian cover, habitat types) and water quality (dissolved oxygen, pH, temperature and conductivity) variables were measured at each sampling site.
3.  A total of 2684 individuals in 16 families and 59 species were recorded.
4.  Ecoregion was a better predictor of the fish assemblage than the other environmental variables, according to the differences between the mean within-class and mean between-class similarities in assemblage data.
5.  Differing landscape characteristics were associated with differing local variables and thereby with differing fish assemblage structures. Riffles, shrub, grass, dissolved oxygen, conductivity and temperature were closely related to fish assemblage structure.
6.  Fish assemblages in sites far from the main river and at higher altitudes also differed from those near the Paraíba do Sul main channel, presumably as a result of differences in connectivity, covarying environmental factors and anthropogenic influence.
7.  These results reinforce the importance of understanding how stream communities are influenced by processes and patterns operating at local and regional scales, which will aid water resource managers to target those factors in their management and rehabilitation efforts.     

Fish assemblages across a complex,tropical freshwater/marine ecotone

Synopsis Riverine fish assemblages in the temperate zone generally show strong longitudinal patterns of faunal turnover and increases in species richness with increasing stream order. We examined the composition and structure of tropical fish assemblages across a complex freshwater/marine ecotone in Tortuguero National Park on the Caribbean coast of Central America. Species turnover was high between four characteristic habitats that largely corresponded with a longitudinal gradient of stream order over distances of less than 30 km. Suites of common fish species characterized each habitat: creeks, rivers, lagoons, and the sea. In addition to the habitat endemics, several species spanned two habitat types, but only three species were collected in more than two habitats. Multivariate gradient analysis of fish assemblages reflected a gradient of habitats that to some extent corresponded to fluvial distances. Due to the unusual configuration of coastal lagoons lying parallel to the coast, the ordination gradient showed little correlation with linear distance to the coast. Environmental variables related to habitat size and salinity showed greatest correspondence with the fish assemblage ordination gradient. Invertebrate-feeding fishes were the predominant trophic group in 15 of 16 fish assemblages, and inland creek sites contained a greater proportion of herbivores and omnivores than other sites. The relative fraction of herbivorous and detritivorous fishes showed a monotonic decline along the longitudinal habitat gradient from inland to coast. Patterns of species composition and richness at Tortuguero Park appeared to agree well with earlier models of factors influencing temperate zone stream fishes. Headwaters have low aquatic primary productivity and contain small colonizing fish species subject to large fluctuations in local densities and intermittent competition. Lagoons contain both large and small species, the latter being restricted largely to shallow edge habitats by predation. Lagoons exhibit more lentic environmental conditions, experience relatively fewer periodic disturbances than headwaters, and their assemblages are inferred to be under relatively greater influence of biotic factors. Fish assemblages of rivers and caños (swampy side channels and braids) appear to be under less abiotic control than headwaters and influenced less by biotic factors than lagoons.     

Patterns of benthic invertebrate assemblages in rivers of northwestern North America

SUMMARY. 1. Biogeographical and on-site. hydrological variables were evaluated to determine spatial distribution of benthic invertebrate assemblages at 100 river sites in northwestern North America.
2. Results of cluster analysis suggested that the river sites comprised sixgroups (A-F), each supporting a characteristic invertebrate assemblage.Distinct groups were best represented by abundant Tricorythidae (C), Amphipoda (F), Rhyacophilidae and Systellognatha (E), and Elmidae and Hydroptilidae (A). Brachycentridae (B) and Oligochaeta (D) were widespread throughout the study area.
2. Both biogeographical and hydrological features contributed to the correct classification of site groupings characterized by distinctive fauna. However, biogeographical features were more useful than variables measured at the river site in discriminating among the site groupings.Groups C and F were most prevalent within the Hudson Bay drainage.Groups A, C and F were typically located within plains; group E sites were in mountainous regions.
4. The hydrological variables most useful in delineating site groupings were mean current velocity and mean depth. Slow, deep waters characterized amphipod sites; shallow, fast flowing waters occurred at Rhyacophilidae Sysellognatha sites.
5. Results substantiate previous views of a strong association between benthic invertebrates in small rivers and the terrestrial biome through which the river flows.     

A preliminary classification of running-water sites in Great Britain based on macro-invertebrate species and the prediction of community type using environmental data

SUMMARY. 1. Macro-invertebrate species lists were obtained for 268 sites on forty-one river systems throughout Great Britain by qualitative sampling in spring, summer and autumn. Information on twenty-eight environmental variables was also collated for each site. The sites were ordinated on the basis of their species content using detrended correspondence analysis (DCA) and classified by two-way indicator species analysis (TWINSPAN). Correlation coefficients between ordination scores and single environmental variables indicated that Axis 1 distinguished between types of rivers and Axis 2 reflected variation along the length of rivers. A preliminary classification of sites into sixteen groups has been proposed, together with a key which allows new sites to be classified. Information on the species and environmental features which characterize each group is also presented.
2. Multiple discriminant analysis (MDA) was employed to predict the group membership of the 268 sites using the twenty-eight environmental variables. 76.1% of sites were classified correctly. An independent assessment of predictive ability using forty test sites yielded a 50% success rate. Predictive ability was higher for the classification presented in this paper than in fifteen additional classifications produced using data from single seasons and/or different taxonomic treatments.
3. TWINSPAN and MDA were found to be useful approaches to the classification of running-water sites by their macro-invertebrate fauna and the prediction of community type (as indicated by the occurrence of species in the sites comprising the group) using environmental variables. Extension of the scope of the classification, coupled with the use of additional environmental variables to increase predictive ability, is now in progress.     

Selecting discriminant function models for predicting the expected richness of aquatic macroinvertebrates

1. The predictive modelling approach to bioassessment estimates the macroinvertebrate assemblage expected at a stream site if it were in a minimally disturbed reference condition. The difference between expected and observed assemblages then measures the departure of the site from reference condition. 2. Most predictive models employ site classification, followed by discriminant function (DF) modelling, to predict the expected assemblage from a suite of environmental variables. Stepwise DF analysis is normally used to choose a single subset of DF predictor variables with a high accuracy for classifying sites. An alternative is to screen all possible combinations of predictor variables, in order to identify several ‘best’ subsets that yield good overall performance of the predictive model. 3. We applied best‐subsets DF analysis to assemblage and environmental data from 199 reference sites in Oregon, U.S.A. Two sets of 66 best DF models containing between one and 14 predictor variables (that is, having model orders from one to 14) were developed, for five‐group and 11‐group site classifications. 4. Resubstitution classification accuracy of the DF models increased consistently with model order, but cross‐validated classification accuracy did not improve beyond seventh or eighth‐order models, suggesting that the larger models were overfitted. 5. Overall predictive model performance at model training sites, measured by the root‐mean‐squared error of the observed/expected species richness ratio, also improved steadily with DF model order. But high‐order DF models usually performed poorly at an independent set of validation sites, another sign of model overfitting. 6. Models selected by stepwise DF analysis showed evidence of overfitting and were outperformed by several of the best‐subsets models. 7. The group separation strength of a DF model, as measured by Wilks’Λ, was more strongly correlated with overall predictive model performance at training sites than was DF classification accuracy. 8. Our results suggest improved strategies for developing reliable, parsimonious predictive models. We emphasise the value of independent validation data for obtaining a realistic picture of model performance. We also recommend assessing not just one or two, but several, candidate models based on their overall performance as well as the performance of their DF component. 9. We provide links to our free software for stepwise and best‐subsets DF analysis.     

Detritivores in Kenyan highland streams: more evidence for the paucity of shredders in the tropics?

1. The relationship between coarse particulate organic matter (CPOM) standing stock and benthic macroinvertebrate assemblages in Kenyan highland streams was determined by sampling seven sites on three rivers (2000–2700 m a.s.l.). Taxa recorded were allocated to functional feeding groups using published literature, mouthpart analysis and examination of gut contents. Patterns were compared with five structurally similar streams in three areas of Europe (south-west France, south-east England, north-east England).
2. Number of individuals and proportion of detritivores in Kenyan streams were equivalent to, or greater than, those in European sites. Shredders were, however, almost completely absent from Kenyan sites, despite high standing stocks of CPOM. Shredders were abundant in all European sites.
3. The phenomenon of low shredder abundance has been observed in other tropical streams in south-east Asia and Central and South America but, in contrast to these regions, the African rivers studied were devoid of shrimps or fish which may occupy the shredding niche elsewhere.
4. These preliminary data suggest that shredder-mediated detritus processing, which is a key functional component of streams in the North Temperate Zone, does not operate in East African streams. There are three possible reasons for this. The first is that tropical African rivers are functionally different to those in temperate regions. This could be because of enhanced microbial activity replacing shredder activity at high temperatures. Alternatively, it could be a result of low palatability of detrital inputs from dominant riparian trees in the region. The second and third are methodological: that our allocation to functional feeding groups is incorrect, and that our sampling methods missed a potentially key shredding taxon – the freshwater crab Potamonautes sp.     

Niche partitioning and the effect of interspecific competition on microhabitat use by two sympatric galaxiid stream fishes

1. Numerous interacting abiotic and biotic factors influence niche use and assemblage structure of freshwater fishes, but the strength of each factor changes with spatial scale. Few studies have examined the role of interspecific competition in structuring stream fish assemblages across spatial scales. We used field and laboratory approaches to examine microhabitat partitioning and the effect of interspecific competition on microhabitat use in two sympatric stream fishes (Galaxias‘southern’ and Galaxias gollumoides) at large (among streams and among sites within streams) and small (within artificial stream channels) spatial scales. 2. Diurnal microhabitat partitioning and interspecific competition at large spatial scales were analysed among three sympatry streams (streams with allotopic and syntopic sites; three separate catchments) and four allopatry streams (streams with only allotopic sites; two separate catchments). Electro‐fishing was used to sample habitat use of fishes at 30 random points within each site by quantifying four variables for each individual: water velocity, depth, distance to nearest cover and substratum size. Habitat availability was then quantified for each site by measuring those variables at each of 50 random points. Diet and stable isotope partitioning was analysed from syntopic sites only. Diel cycles of microhabitat use and interspecific competition at small spatial scales were examined by monitoring water velocity use over 48 h in artificial stream channels for three treatments: (i) allopatric G. ‘southern’ (10 G. ‘southern’); (ii) allopatric G. gollumoides (10 G. gollumoides) and (iii) sympatry (five individuals of each species). 3. One hundred and ninety‐four G. ‘southern’ and 239 G. gollumoides were sampled across all seven streams, and habitat availability between the two species was similar among all sites. Galaxias‘southern’ utilised faster water velocities than G. gollumoides in both the field and in channel experiments. Both species utilised faster water velocities in channels at night than during the day. Diet differences were observed and were supported by isotopic differences (two of three sites). No interspecific differences were observed for the other three microhabitat variables in the field, and multivariate habitat selection did not differ between species. Interspecific competition had no effect on microhabitat use of either species against any variable either in the field (large scale) or in channels (small scale). 4. The results suggest that niche partitioning occurs along a subset of microhabitat variables (water velocity use and diet). Interspecific competition does not appear to be a major biotic factor controlling microhabitat use by these sympatric taxa at any spatial scale. The results further suggest that stream fish assemblages are not primarily structured by biotic factors, reinforcing other studies de‐emphasising interspecific competition.     

Temporal trends in algae, benthic invertebrate, and fish assemblages in streams and rivers draining basins of varying land use in the south-central United States, 1993–2007

Site-specific temporal trends in algae, benthic invertebrate, and fish assemblages were investigated in 15 streams and rivers draining basins of varying land use in the south-central United States from 1993–2007. A multivariate approach was used to identify sites with statistically significant trends in aquatic assemblages which were then tested for correlations with assemblage metrics and abiotic environmental variables (climate, water quality, streamflow, and physical habitat). Significant temporal trends in one or more of the aquatic assemblages were identified at more than half (eight of 15) of the streams in the study. Assemblage metrics and abiotic environmental variables found to be significantly correlated with aquatic assemblages differed between land use categories. For example, algal assemblages at undeveloped sites were associated with physical habitat, while algal assemblages at more anthropogenically altered sites (agricultural and urban) were associated with nutrient and streamflow metrics. In urban stream sites results indicate that streamflow metrics may act as important controls on water quality conditions, as represented by aquatic assemblage metrics. The site-specific identification of biotic trends and abiotic–biotic relations presented here will provide valuable information that can inform interpretation of continued monitoring data and the design of future studies. In addition, the subsets of abiotic variables identified as potentially important drivers of change in aquatic assemblages provide policy makers and resource managers with information that will assist in the design and implementation of monitoring programs aimed at the protection of aquatic resources.     

Functional redundancy of stream macroconsumers despite differences in catchment land use

1. The conversion of forested landscapes to agriculture and, increasingly, to suburban and urban development significantly affects the structure and function of both terrestrial and aquatic ecosystems. While a growing body of research is examining how biotic communities change in response to human alteration of landscapes, less is known about how these changes in community structure affect biotic interactions. 2. The objective of this study was to examine top‐down control by macroconsumers (fish and crayfish) across a human‐impacted landscape. We predicted that changes in stream macroconsumers and physicochemical characteristics associated with increased catchment development (e.g. decreased abundance of fish that are obligate benthic invertivores, increased sedimentation) would diminish top‐down control of benthic insects. We expected that effects on algal assemblages would be more variable, with increased top‐down control at sites dominated by algivorous fish and diminished control elsewhere. To test these predictions, we experimentally excluded fish and crayfish from areas of the bed of five streams whose catchments ranged from 100% to <50% forested, and examined the effects of exclusion on benthic insects and algae. 3. Despite cross‐site differences in physical, chemical and biological characteristics, the outcome of our experiments was consistent across five sites representing a range of catchment development. Across all sites, macroconsumers reduced total insect biomass, largely due to decreases in Chironomidae and Hydropsychidae larvae. Macroconsumers also affected algal assemblages, reducing chlorophyll‐a and the proportion of upright and filamentous diatoms (e.g. Melosira, Cymbella) but increasing the proportion of adnate diatoms (e.g. Achnanthes) across all sites. 4. We expected that differences in factors such as macroconsumer assemblage composition, nutrient and light availability and sedimentation would result in variable responses to macroconsumer exclusion in the five streams. Contrary to these expectations, only one response variable (ash‐free dry mass) showed a statistically significant interaction (i.e. site × exclusion) effect. Most responses to exclusion were relatively consistent, suggesting functional redundancy in assemblages of macroconsumers among the sites despite differences in catchment land use.     

Environmental DNA reveals a mismatch between diversity facets of Amazonian fishes in response to contrasting geographical,environmental and anthropogenic effects

Freshwater ecosystems are among the most endangered ecosystem in the world. Understanding how human activities affect these ecosystems requires disentangling and quantifying the contribution of the factors driving community assembly. While it has been largely studied in temperate freshwaters, tropical ecosystems remain challenging to study due to the high species richness and the lack of knowledge on species distribution. Here, the use of eDNA-based fish inventories combined to a community-level modelling approach allowed depicting of assembly rules and quantifying the relative contribution of geographic, environmental and anthropic factors to fish assembly. We then used the model predictions to map spatial biodiversity and assess the representativity of sites surveyed in French Guiana within the EU Water Framework Directive (WFD) and highlighted areas that should host unique freshwater fish assemblages. We demonstrated a mismatch between the taxonomic and functional diversity. Taxonomic assemblages between but also within basins were mainly the results of dispersal limitation resulting from basin isolation and natural river barriers. Contrastingly, functional assemblages were ruled by environmental and anthropic factors. The regional mapping of fish diversity indicated that the sites surveyed within the EU WFD had a better representativity of the regional functional diversity than taxonomic diversity. Importantly, we also showed that the assemblages expected to be the most altered by anthropic factors were the most poorly represented in terms of functional diversity in the surveyed sites. The predictions of unique functional and taxonomic assemblages could, therefore, guide the establishment of new survey sites to increase fish diversity representativity and improve this monitoring program.