Responses of estuarine intertidal microphytobenthic algal assemblages to enhanced ultraviolet B radiation

As a result of ozone depletion, ground doses of ultraviolet B (UVB) radiation in the mid latitudes of the Northern Hemisphere have increased since the 1980s, and current predictions indicate no possible alleviation until at least post 2020. Mudflats and sandflats are important coastal-zone habitats, and support extensive biofilms of benthic microalgae (microphytobenthos). In intertidal situations, these assemblages are exposed to high levels of UVB radiation during periods of tidal exposure. Exposure of intertidal biofilms dominated by epipelic (mud-inhabiting) diatoms to 0, 0.18 or 0.35 W m⁻² UVB radiation for between 4 and 10 days resulted in no significant decreases in the maximum PSII quantum efficiency (F_v/F_m) throughout diel exposure periods. Although the quantum efficiency of electron transport (F_q′/F_m′) showed significant reductions early in some experiments, the major response was an increase in F_q′/F_m′ in UVB exposed biofilms. This increase in F_q′/F_m′ was suggestive of a protective vertical migration down into the sediment. Single-cell and whole biofilm fluorescence imaging demonstrated, for the first time, that motile diatoms are able to detect UVB radiation independently of UVA or photosynthetically active radiation (PAR) and migrate rapidly down (within 15 min) into the sediments to avoid it. This behavioural acclimation mechanism appears to prevent significant accumulation of UVB induced damage to the algae. UVB exposure had no significant effect of biofilm photosynthesis (measured by ¹⁴C carbon fixation), but did alter organic carbon allocation patterns, with significantly less new carbon allocated to intracellular storage (glucan) and extracellular colloidal carbohydrate fractions. Significant reductions in the sediment standing stocks of chlorophyll a (Chl a), colloidal carbohydrates, extracellular polymeric substances (EPS) were seen after 7 days of UVB exposure. This study showed that marine intertidal benthic diatoms use a behavioural strategy to avoid exposure to UVB and that this response is effective as a short-term protection mechanism against UVB damage. However, altered carbon allocation patterns feed forward over time into changes in biofilm biomass and sediment carbohydrate dynamics. This suggests that continual long-term exposure to UVB may impact on sediment carbon cycling and trophic interactions and on the stabilization of sediments by microalgal biofilms through their production of extracellular carbohydrates.     

Characterization of the adhesive mucilages secreted by live diatom cells using atomic force microscopy

Atomic Force Microscopy (AFM) resolved the topography and mechanical properties of two distinct adhesive mucilages secreted by the marine, fouling diatom Craspedostauros australis. Tapping mode images of live cells revealed a soft and cohesive outer mucilage layer that encased most of the diatom's siliceous wall, and force curves revealed an adhesive force of 3.58 nN. High loading force, contact mode imaging resulted in cantilever 'cleaned' cell walls, which enabled the first direct observation of the active secretion of soft mucilage via pore openings. A second adhesive mucilage consisted of strands secreted at the raphe, a distinct slit in the silica wall involved in cell-substratum attachment and motility. Force measurements revealed a raphe adhesive strand(s) resistant to breaking forces up to 60 nN, and these strands could only be detached from the AFM cantilever probe using the manual stepper motor.     

Structure and Dynamics of Exopolymers in an Intertidal Diatom Biofilm

Diatom biofilms growing at the surface of the intertidal mudflat of Marennes Oléron, France, were incubated for 48 h in the laboratory under simulated conditions of high- and low tide (immersed and emersed in seawater) and day and night (illuminated or dark conditions). The biofilms were subsequently sampled using the cryolander technique, without disturbing the structure. The samples were kept in liquid nitrogen until they were transferred to the cooled stage of a field-emission cryo-scanning electron microscope, which was used to study the structural relationships between the sediment particles, the diatoms and the different types of extracellular polymeric substances (EPS) produced by these organisms. The diatoms were most abundant at the sediment surface when incubated in the light under emersed conditions. In the dark or when immersed, the diatoms migrated into the sediment. In the light, the diatoms were coated with EPS, while this was not the case when incubated in the dark. When immersed, the sediment surface appeared smooth as the result of the deposition of mud. Under emersed conditions, the coarser silt grains were prominently present. These grains were wrapped with organic matter and bound together through threads of EPS. This was the case both in light and in dark incubated sediment. It is proposed that this latter type of EPS contributes to the increased erosion threshold of intertidal mudflats colonized by biofilms of diatoms.     

The relationship between surface sediment diatom assemblages and pH in 33 Galloway lakes: Some regression models for reconstructing pH and their application to sediment cores

The species composition of surface sediment diatom assemblages in 33 Galloway lakes, pH range c. 4.5 to 7.4, is related in a statistically significant manner to water acidity (or to factors closely associated with pH). Predictive models of summer mean pH, using simple regression equations of Index B (Renberg & Hellberg, 1982) with both Scandinavian and Galloway data sets, and multiple regression equations using diatom pH preference groups and individual species, are described and applied to fossil diatoms in six sediment cores. Although multiple regression of individual species gives the highest correlation coefficient (r²=0.87) in the modern data set this method is least appropriate for reconstructing pH values from fossil material where predictor species are often absent. Of the four methods examined here it is suggested that multiple regression of diatom preference groups is probably the most suitable for pH reconstructions from sediment cores.     

The ultrastructure of Mychonastes ruminatus gen. et sp. nov., a new member of the Chlorophyceae isolated from brackish water

A new monotypic genus of the Chlorophyceae isolated from brackish water of the Chesapeake Bay, Maryland, U.S.A. is described as Mychonastes ruminatus. The alga is compared with similar members of the Oocystaceae. Based on the presence of a thick ruminate cell wall, the lack of discernible pyrenoids, and other vegetative characters, Mychonastes can be delineated from other green coccoid unicells.

The cellular life cycle of Mychonastes was studied by electron microscopy and compared to published studies of Chlorella. The genera are differentiated by wall and chloroplast structure. Mychonastes cell wall is sculptured and changes during the life cycle from a highly irregular appearance when young, to a less irregular state when mature. Mychonastes chloroplast lacks pyrenoids at all times. Chlorella has a smooth wall and pyrenoids which are apparent just after release from the mother cell until division. Organelles of both genera migrate in a similar pattern throughout the life cycle, with Mychonastes producing two or four autospores, and Chlorella producing four or more (rarely two).     

Transfer function between surface sediment diatom assemblages and sea-surface temperature and salinity of the Labrador Sea

Q-mode factor analysis (CABFAC) of 38 diatom species in 66 surface sediment samples from the Labrador Sea allowed the definition of six assemblages explaining 95.69% of the total variance. The first assemblage (40.12% of the total variance) is represented by Thalassiothrix longissima, a species characteristic of the Irminger Current and associated with the West Greenland Current. The second assemblage (34.52% of the total variance) is represented by Thalassiosira gravida (resting spores), a cold water species associated with the Labrador Current. A third assemblage (11.43% of the variance) represented by Chaetoceros spp. is concentrated in the northeastern section of the Labrador Sea and associated with upwelling and high productivity. The fourth, the fifth and the sixth assemblages, represented, respectively, by Coscinodiscus marginatus, Coscinodiscus oculus iridis, and Coscinodiscus divisus, and Nitzschia frigida, are less significant and account, respectively, for 4.95, 2.62 and 2.04% of the total variance. Transfer functions derived by relating factor assemblages to surface water temperature and salinity (August and February) give standard errors of estimate of ±0.93°C (August) and ±0.64°C (February) for temperature, and of ±0.58‰ (August) and ±0.45‰ (February) for salinity. High correlations between the measured and estimated parameters confirm the validity of the paleoecological equations for the reconstruction of the Labrador Sea paleoclimate.     

The correlation between biofilm biopolymer composition and membrane fouling in submerged membrane bioreactors

Biofouling, the combined effect of microorganism and biopolymer accumulation, significantly reduces the process efficiency of membrane bioreactors (MBRs). Here, four biofilm components, alpha-polysaccharides, beta-polysaccharides, proteins and microorganisms, were quantified in MBRs. The biomass of each component was positively correlated with the transmembrane pressure increase in MBRs. Proteins were the most abundant biopolymer in biofilms and showed the fastest rate of increase. The spatial distribution and co-localization analysis of the biofouling components indicated at least 60% of the extracellular polysaccharide (EPS) components were associated with the microbial cells when the transmembrane pressure (TMP) entered the jump phase, suggesting that the EPS components were either secreted by the biofilm cells or that the deposition of these components facilitated biofilm formation. It is suggested that biofilm formation and the accumulation of EPS are intrinsically coupled, resulting in biofouling and loss of system performance. Therefore, strategies that control biofilm formation on membranes may result in a significant improvement of MBR performance.     

Impact of the exopolysaccharides Pel and Psl on the initial adhesion of Pseudomonas aeruginosa to sand

In this study, the impact of the exopolysaccharides Pel and Psl on the cell surface electron donor-electron acceptor (acid-base) properties and adhesion to quartz sand was investigated by using Pseudomonas aeruginosa PAO1 and its isogenic EPS-mutant strains Δpel, Δpsl and Δpel/Δpsl. The microbial adhesion to hydrocarbon (MATH) test and titration results showed that both Pel and Psl contribute to the surface hydrophobicity of the cell. The results of contact angle measurement, however, showed no correlation with the cell surface hydrophobicity measured by the MATH test and the titration method. Packed-bed column experiments indicated that the exopolysaccharides Pel and Psl are involved in the initial cell attachment to the sand surface and the extent of their impact is dependent on the ionic strength (IS) of the solution. Overall, the Δpel/Δpsl double mutant had the lowest adhesion coefficient to sand compared with the wild-type PAO1, the Δpel mutant and the Δpsl mutant. It is hypothesized that in addition to bacterial surface hydrophobicity and DLVO forces, other factors, eg steric repulsion caused by extracellular macromolecules, and cell surface appendages (flagella and pili) also contribute significantly to the interaction between the cell surface and a sand grain.     

氧化亚铁硫杆菌胞外多聚物在生物浸出中的作用

氧化亚铁硫杆菌(Thiobacillus ferrooxidans,T.f)是一种重要的浸矿微生物。它与矿物的界面作用机理是复杂的,涉及物理化学的和生物化学的参数。本文运用电镜细胞化学方法对氧化亚铁硫杆菌(Thiobacillus ferrooxidans)的胞外多聚物(EPS)的脂类、多糖、蛋白质等生物大分子以及铁离子进行了研究,并探讨了EPS与吸附、生物膜形成的关系以及生物膜在浸矿过程中的作用。     

Surface sediment diatom assemblages and epilimnetic total phosphorus in large, shallow lakes of the Yangtze floodplain: their relationships and implications for assessing long-term eutrophication

1. The Yangtze floodplain (SE China) is characterized by a number of large shallow lakes, many of which have undergone eutrophication due to the intensification of agriculture and urban growth over recent decades. As monitoring data are limited and in order to determine lake baseline nutrient concentrations, 49 lakes were sampled, covering a total phosphorus (TP) gradient (c. 30–550 μg L⁻¹) to develop a diatom-based inference model. 2. There are three dominant diatom assemblages in these shallow lakes with a marked change in assemblage structure near the boundary between eutrophic and hypereutrophic nutrient levels (as indicated by their TP value). Canonical correspondence analysis indicated that TP was the most important and significant variable in explaining the diatom distributions, independently accounting for 9.5% variance of diatoms. 3. Forty-three lakes were used to generate a transfer function using weighted averaging (WA) with inverse deshrinking. This model had low predictive error (root mean squared error of prediction; RMSEP_jack = 0.12) and a high coefficient of prediction (R²_jack = 0.82), comparable with regional TP models elsewhere. The good performance of this TP model may reflect the low abundance of benthic diatom species which are commonly regarded as the main error source in European shallow lake WA models. 4. The WA model was used to reconstruct the past-TP concentrations for Taibai Lake, a shallow hypereutrophic lake in Hubei province. The results showed that TP concentration varied slightly (43–62 μg L⁻¹) prior to the 1920s, indicating an eutrophic state since the 1800s. A period of sustained eutrophication occurred after 1950, because of the development of agriculture, reflecting by maximum values of Aulacoseira alpigena and increased abundance of Cyclotella meneghiniana, C. atomus and Cyclostephanos dubius. The steep increase in nutrient concentration after 1970 was related to the overuse of chemical fertilizer and fish farming in the catchment. 5. The shift in fossil diatoms from epiphytic to planktonic forms in the lake sediment core during 1950–70 provides useful information on the transformation from macrophyte-dominated to alga-dominated states. It is plausible that the TP concentration of 80–110 μg L⁻¹ observed in this study is the critical range for switching between the two stable states in the lake. 6. The regional diatom-TP model developed in this study allows, therefore, the possibility of reconstructing historical background nutrient concentrations in lakes. It will provide an indication of the onset and development of eutrophication at any site. This is particularly important for the many lakes in the Yangtze floodplain where information about historical changes in water quality is lacking.     

The effect of wrack composition and diversity on macrofaunal assemblages in intertidal marine sediments

Wrack (dead, washed-up seaweed and seagrass) buried in soft substrata may increase the organic content and alter the physical structure of sediments. These effects may influence the composition and structure of macrofaunal assemblages in the sediment. Such influences can be expected to vary according to the type and amount of wrack as well as the presence of invasive seaweeds in the wrack. In this study, we deliberately buried different amounts of the invasive species Sargassum muticum in isolation or mixed to the native species Ulva sp. and Fucus vesiculosus, in two intertidal sandflats to test some hypotheses about the response of macrofaunal assemblages. We tested whether (1) diversity of detritus (i.e. different mixtures), and (2) the amount of detritus of S. muticum influenced the composition and the relative abundance of macrofaunal assemblages. We also assessed whether the sediment organic carbon and the biomass of benthic microalgae varied depending on the diversity of detritus and the amount of detritus of S. muticum. Finally, we tested if these effects of wrack were consistent across sites. Results indicated that buried wrack affected the composition and structure of macrofaunal assemblages in short-term (i.e. 4 weeks), but there were no differences depending on detritus diversity or the amount of S. muticum. In addition, sediment organic matter and microalgal biomass were not affected by the addition of wrack. They instead varied greatly among small spatial scales (i.e. plots). Wrack composition or abundance of the invasive species S. muticum played thus a small role in shaping the structure of macrofaunal assemblages or the biomass of benthic microalgae in these intertidal sediments, probably because these sediments are frequently affected by various inputs of organic matter and benthic assemblages are already adapted to organically enriched sediments.     

The effect of soil drought on the composition of carbohydrates in yellow lupin seeds and triticale kernels

Carbohydrate analysis was made of yellow lupin seeds (cv. Juno) and triticale kernels (cv. Dagro), produced by plants exposed to drought stress for 21 days after the initial flowering of the first node of lupin and initial earing of triticale. The seeds of all experimental variants were harvest at full maturity, dried and stored in linen bags at 18–20 °C. Soluble carbohydrates were extracted and analysed as described by Horbowicz and Obendorf (1994). Gas chromatographic separation of carbohydrates showed that raffinose family oligosaccharides (RFO) were dominant in lupin seeds. The other carbohydrates present were sucrose (10 %), cyclitols and galactosyl cyclitols (12–13 %). Soil drought resulted in higher levels of verbascose, but decreased the quantities of the other carbohydrates in lupine seeds. In triticale kernels, over 50 % of soluble sugars were composed of sucrose and maltose, while 17.7 % were raffinose and stachyose. In response to drought the content of mono- and oligosaccharides declined. The decrease of soluble carbohydrates content in seeds of lupin and triticale kernels has no effect on the seed germination and vigour. It is assumed that the changes in the concentration of soluble sugars observed under drought may impair the storability of triticale kernels, but improve it for lupine seeds.     

Alteration of microbial community composition and changes in decomposition associated with an invasive intertidal macrophyte

Data demonstrating the effects of biological invaders on microbial communities and microbial processes are scarce, especially in marine environments. Research was conducted at Padilla Bay, Washington, to examine the effect that an invasive intertidal eelgrass, Zostera japonica Aschers & Graebn, has on rates of decomposition, microbial community composition, and the possible implications for associated ecosystem processes in this estuarine environment. A series of observational and experimental studies were conducted in beds of Z. japonica, beds of its native congener, Zostera marina, and mixed eelgrass beds. These studies assessed decomposition of invasive and native eelgrass, enumerated bacterial abundance, and examined sole source carbon usage (SSCU) by microbial assemblages. Z. japonica decomposed more rapidly than its native congener throughout the study period although rates of decomposition were variable. Microbial abundance did not differ among different vegetation compositions although differences in SSCU by microbial assemblages were detected among beds of invasive, native, and mixed eelgrass. These results indicate that this abundant invasive species can accelerate rates of decomposition and alter the associative decomposer community, which may lead to higher carbon and nutrient turnover within Padilla Bay.     

The regulation of photosynthetic rate and activation of extracellular carbonic anhydrase under CO2-limiting conditions in the marine diatom Skeletonema costatum

In the marine diatom Skeletonema costatum , carbonic anhydrase activity exterior to the plasma membrane (CA_ext) was detected only when the available CO₂ concentration was less than 5·0 mmol m^–3, this activity being unaffected by the total dissolved inorganic carbon concentration. The inhibition of CA_ext by dextran bound sulphonamide (DBS) demonstrated the key role of this enzyme in maintaining photosynthetic rate under CO₂-limited conditions. Treatment with trypsin followed by affinity chromatography on p-aminomethylbenzene-sulphamide agarose and subsequent SDS-PAGE analysis revealed a polypeptide from carbon-replete cells of identical molecular mass to the CA_ext released by trypsin from CO₂-limited cells. Redox activity in the plasma membrane of intact cells was measured by following the light-dependent reduction of ferricyanide or NADP, the greatest activity being shown by CO₂-limited cells. Overall the results suggest that high rates of redox activity under conditions of CO₂-limitation were required for the activation of CA_ext.     

Detection of heavy metals in bacterial biofilms and microbial flocs with the fluorescent complexing agent Newport Green

The complexing agent Newport Green fluoresces upon binding of nickel, zinc or cobalt. It was used to detect nickel or zinc in MOPS buffer, in gel-like matrices, and in natural biofilms and microbial flocs cultivated in the laboratory. The response curves for increasing nickel concentrations indicated an equimolar binding capacity of Newport Green for nickel in MOPS buffer, whereas zinc fluorescence reached saturation in the presence of a 10-fold excess of zinc ions relative to Newport Green molecules. The maximum fluorescence intensity as determined by luminometry was 8-fold and 4-fold above background for nickel and zinc, respectively. The response of Newport Green to either nickel or zinc in the presence of the other metal is consistent with a different binding affinity of Newport Green for the two metals. Zinc binds more strongly to the complexing agent than nickel but it leads to a weaker fluorescent signal which was detectable by luminometry but not by confocal laser scanning microscopy (CLSM). Newport Green was able to complex nickel in the presence of 1% gelatin or agarose as determined by CLSM and image processing. Its application to fully hydrated bacterial biofilms or microbial flocs revealed the presence of nickel outside of cells. The results suggest that in addition to cellular sorption, metals are bound extracellularly by extracellular polymeric substances in intact and undisturbed microbial aggregates. Journal of Industrial Microbiology & Biotechnology (2000) 24, 116–123. Received 11 June 1999/ Accepted in revised form 04 November 1999     

Ecology and Biogenesis of Functional Amyloids in Pseudomonas

Functional amyloids can be found in the extracellular matrix produced by many bacteria during biofilm growth. They mediate the initial attachment of bacteria to surfaces and provide stability and functionality to mature biofilms. Efficient amyloid biogenesis requires a highly coordinated system of amyloid subunits, molecular chaperones and transport systems. The functional amyloid of Pseudomonas (Fap) represents such a system. Here, we review the phylogenetic diversification of the Fap system, its potential ecological role and the dedicated machinery required for Fap biogenesis, with a particular focus on the amyloid exporter FapF, the structure of which has been recently resolved. We also present a sequence covariance-based in silico model of the FapC fiber-forming subunit. Finally, we highlight key questions that remain unanswered and we believe deserve further attention by the scientific community.     

The relationship of creatine kinase variability with body composition and muscle damage markers following eccentric muscle contractions

[Purpose]

The purpose of the study was to investigate the relationship between CK variability and body composition and muscle damage markers following eccentric exercise.

[Methods]

Total 119 healthy male subjects were recruited to perform 50 eccentric contractions consisted of 2 sets of 25 contractions. Then, blood creatine kinase (CK) activity was analyzed to divide into three groups based on their CK activity levels. Maximum isometric strength (MIS), muscle soreness (SOR) and body composition data were obtained before and after exercise.

[Results]

The results showed that high CK responders had a significant decrease in MIS (p<0.001) and greater SOR (p<0.01) following eccentric exercise compared to low CK responders. Percent body fat was also higher in high responders compared to low responders (p=0.014). Peak CK activity was significantly correlated with MIS and SOR but no correlation with % body fat, muscle mass, and body mass index.

[Conclusion]

CK variability following eccentric exercise is closely related to MIS and SOR and % body fat may be a potent factor for CK variability.