Population Genetic Structure of Two Columnar Cacti with a Patchy Distribution in Eastern Brazil

The genetic variability and population genetic structure of six populations of Praecereus euchlorus and Pilosocereus machrisii were investigated. The genetic variability in single populations of Pilosocereus vilaboensis, Pilosocereus aureispinus, and Facheiroa squamosa was also examined. All of these cacti species have a patchy geographic distribution in which they are restricted to small areas of xeric habitats in eastern Brazil. An analysis of genetic structure was used to gain insights into the historical mechanisms responsible for the patchy distribution of P. euchlorus and P. machrisii. High genetic variability was found at the populational level in all species (P=58.9–92.8%, A_p=2.34–3.33, H_e=0.266–0.401), and did not support our expectations of low variability based on the small population size. Substantial inbreeding was detected within populations (F_IS=0.370–0.623). In agreement with their insular distribution patterns, P. euchlorus and P. machrisii had a high genetic differentiation (F_ST=0.484 and F_ST=0.281, respectively), with no evidence of isolation by distance. Accordingly, estimates of gene flow (N_m) calculated from F_ST and private alleles were below the level of N_m=1 in P. machrisii and P. euchlorus. These results favored historical fragmentation as the mechanism responsible for the patchy distribution of these two species. The genetic distance between P. machrisii and P. vilaboensis was not compatible with their taxonomic distinction, indicating a possible local speciation event in this genus, or the occurrence of introgression events.     

Seedling establishment ofPolygonum cuspidatum andPolygonum weyrichii var.alpinum at high altitudes of Mt Fuji

Seedling establishment ofPolygonum cuspidatum (Seib. et Zucc.) andPolygonum weyrichii (F. Schmit) var.alpinum (Maxim.), dominant early-successional species in a volcanic gravel area on Mt Fuji, Japan, was compared for current-year seedlings at 2500 m a.s.l. The rate of survival in the first winter after germination at 2500 m was 2% and 24% forP. cuspidatum andP. weyrichii seedlings, respectively, and correlated with the upper distribution limit of each (2500–2600 m forP. cuspidatum; 3200–3300 m forP. weyrichii). The critical size for survival was 12 mg dry weight for overwintering current-year seedlings of both species. At 2500 m, the percentage of seedlings that attained the critical size for survival at the end of the first growing season was 19% and 85% forP. cuspidatum andP. weyrichii, respectively. Growth curves indicated that the larger-seeded characteristic ofP. weyrichii contributed to larger end-of-season size and resulted in higher rate of seedling survival at 2500 m, compared with smaller-seededP. cuspidatum. Current-year seedlings ofP. weyrichii, at least up to 3250 m, attained the first year annual growth critical for overwintering and therefore for successful seedling establishment, due to the large-seeded characteristic. At the top (3770 m) beyond the upper distribution limit ofP. weyrichii, most seedlings raised artificially failed to attain the critical size for survival in the first growing period due to the reduced growing period. Failure of seedling establishment would thus appear to restrict the distribution of the species at altitudes higher than 3300 m.     

Isolation and characterization of microsatellite loci in <Emphasis Type="Italic">Pedicularis verticillata</Emphasis> L. using PCR-based isolation of microsatellite arrays (PIMA)

Pedicularis verticillata L. is a highly valuable herb for traditional Chinese medical treatment. In this report, 11 microsatellite loci from P. verticillata were isolated. The simple sequence repeat (SSR) markers were screened in 23 samples of wild populations of P. verticillata, and eight samples from its sister P. ikomai. The number of alleles ranged from 4 to 13, and value of expected (H _E) and observed (H ₀) heterozygosity was 0.62609–0.89662 and 0–0.95652, respectively. All loci were significantly deviated from Hardy–Weinberg expectations due to the heterozygote deficiency, indicating a dramatic loss of genetic polymorphisms in the restrictedly distributed species. The markers amplified well in the two species are useful for examining genetic diversity and population genetic structure, which, in turn, can provide information for establishing conservation strategy for these endangered species.     

Development of 15 polymorphic microsatellite loci from <Emphasis Type="Italic">Garrulax morrisonianus</Emphasis> (Timaliidae), an endemic avian species of Taiwan

Garrulax morrisonianus, an endemic avian species of Taiwan, inhabits evergreen forests at high elevations of 2,000–3,952 m. In this study, we developed 15 microsatellite primer pairs for genetic study. These markers were screened for 52 samples collected from wild populations of different geographical regions. The number of alleles ranged from 4 to 13. The expected (H _E) and observed (H _O) heterozygosities were 0.430–0.725 and 0.000–0.500, respectively. All loci were significantly deviated from Hardy-Weinberg equilibrium due to the heterozygote deficiency. The authors Tzen-Yuh Chiang, Sao-Cheng Lao, Ya-Fu Lee contributed to the study equally.     

Initial regenerative processes ofDistylium racemosum andPersea thunbergii in an evergreen broad-leaved forest

We studied the initial regenerative processes ofDistylium racemosum andPersea thunbergii, major canopy species, in an old-growth evergreen broad-leaved forest, Kagoshima, southwestern Japan. Although the two species coexisted, the patterns of seed production, seedling emergence, and sapling survival were different between them. During the observation (1989–1991),P. thunbergii produced large numbers of seeds in alternate years, whileD. racemosum had no mast year. The density of established seedlings was high and increased with mass seed production forP. thunbergii, but was fairly low forD. racemosum. The mortality of seedlings and saplings ofP. thunbergii was higher than that ofD. racemosum. In a closed stand, the sapling bank was maintained by dense seedling supply forP. thunbergii, and by extremely low mortality of individuals germinated before the beginning of observation forD. racemosum. Since saplings ofD. racemosum showed continuous height growth beneath the closed canopy, the possibility of recruitment into the upper layer seems to be high. The strategy ofP. thunbergii might be to wait for suitable conditions favoring sapling growth on various site by means of frequent and large seed productivity and wide dispersal of seeds. Thus both species might be able to coexist through environmental heterogeneity.     

Mackerel from the northern indian ocean and the red sea arescomber australasicus, notscomber japonicus

The population ofScomber from the Red Sea and northern Indian Ocean (gulfs of Aden and Oman) is identified asS. australasicus rather thanS. japonicus based on having 30–33 vs. 26–29 interneural bones under the first and second dorsal fins and the combination of interneural bone counts of 16–20 under the first dorsal fin (vs. 13–16) and first dorsal fin spine counts of 10–13 (vs. 9–10). These are the best morphological characters to distinguish these two species. This change in identification constitutes a major range extension forS. australasicus which was thought to be restricted to the Pacific Ocean and the southeastern Indian Ocean around Western Australia.     

Genetic diversity of six populations of Atractomorpha sinensis and Atractomorpha peregrina in Shanxi Province, China

Ten enzymes (AAT, CK, G3PDH, HEX, IDH, LDH, MDH, ME, PGI, PGM) were examined using horizontal starch gel electrophoresis to estimate the levels of genetic variation within and among six natural populations of two grasshopper species Atractomorpha sinensis and A. peregrina from Shanxi, China. The collecting sites were geographically distant from each other from south to north: Quwo district, Linfen city; Xiangyuan county, Changzhi; Jinyuan district, Taiyuan city; Yuanping county, Xinzhou city and Fanshi county of Xinzhou.A. sinensis showed 43 alleles at 16 loci but A. peregrine showed 39 alleles at 15 loci (Idh-1 was deficient). The zymograms showed that some common alleles were shared at several loci in these two species (Aat-1-b, Aat-2-b, G3pdh-a, Ck-1-b and Ldh-b). However, Hex-1-a, Hex-2-a, Hex-3-a, Idh-2-b, Mdh-2-b, Mdh-1-f, Pgi-b, Pgm-b had common alles in A. sinensis and Hex-1-b, Hex-2-b, Hex-3-b, Idh-2-a, Mdh-2-a, Mdh-1-d, Pgi-a, Pgm-c were of high frequency in A. peregrine instead. Most of the observed genotype frequencies were found to significantly deviate from the Hardy-Weinberg expectations in both species. A tendency of clinal distribution of allele frequency was observed at three loci. The frequency of the moderately migrating allele Me-c (0.318–0.740) in A. peregrina, Hex-1-a (0.800–1.000) and Ldh-b (0.487–0.750) in A. sinensis demonstrated increased frequency from north to south. Such tendency suggests that the allele frequency in these three loci may be correlated with the species’ geographic distributions. A. sinensis showed higher genetic diversity than A. peregrina as indicated by higher mean number of alleles per locus (A = 1.9–2.3 in A. sinensis and 1.7–2.2 in A. peregrina), percentage of polymorphic loci (56.3%–68.8% in A. sinensis and 43.8%–56.3% in A. peregrina), and the observed heterozygosities (H _o = 0.072–0.096 in A. sinensis and 0.70–0.107 in A. peregrina). The observed heterozygosities of the six populations were all noticeably lower than the Hardy-Weinberg expectations, mostly due to heterozygote deficiency in the populations of both species. The overall mean F _ST were small (F _ST = 0.045, P > 0.05 in A. sinensis populations and 0.087, P > 0.05 in A. peregrina populations). Nei’s genetic identity (I) estimates indicate low intraspecific (>0.95) but higher interspecific (0.377–0.447) genetic diversity. The cluster analysis based on modified Roger’s genetic distance (D) showed that the two species were divided into two branches. Both species are of limited dispersal capacity and a moderate geographical barrier might significantly restrict the gene exchange among populations, resulting in accumulation of local genetic differentiations. The A. sinensis populations used in this study were separated from each other by 155.2 to 271.4 km and the A. peregrina populations were separated from each other by 78.8 to 174.9 km with observable physical barriers. The allozyme data showed only minimal genetic differentiation at population level, most likely as a result of gene exchange. It is reasoned that natural factors and human agricultural activities might have facilitated migration and dispersal for the two species. __________ Translated from Acta Ecologica Sinica, 2005, 25(10): 2574–2481 [译自: 生态学报]     

Late quaternary dynamics of pollen influx at mineral lake,Washington

Pollen influx analysis at Mineral Lake, Washington, indicates that immediately south of the Puget Lobe of the Fraser Glaciation, tundra was a characteristic vegetation until 16,300 years ago. Invasion ofPinus contorta began 17,500 years B.P., and boreal climax conifers (Abies, Picea andTsuga mertensiana), 16,300, but was temporarily interrupted by the Vashon advance (14,500–14,000 yr B.P.).Pseudotsuga menziesii began to grow in population 10,750 years ago, and woodland was established within a time span of 1,000 years. Modern lowland coniferous forests began to form 7,000 years ago. Logistic analysis of pollen abundance changes show that the intrinsic growth rate,r (yr⁻¹), of pioneer species (e.g. 0.024–0.026 inPteridium aquilinum) is higher than that of climax species (e.g. 0.003 inThuja plicata).P. menziesii, a subclimax species, shows an intermediater value (0.013) between these two ecologically different taxa. The absoluter value ofP. contorta (−0.011) is only slightly lower than that ofP. menziesii, although their replacement began almost simultaneously. Thus competition between these species was intense before the inflection point ofPinus curve 10,100 years ago. At this time, forest gaps became abundantly available forPseudotsuga, as indicated by a peak of the diagnostic factor (the reciprocal of the pollen influx).     

Predatory mirids of the green apple aphidAphis pomi,the two-spotted spider miteTetranychus urticae and the European red mitePanonychus ULMI in apple orchards in Québec

The incidence of predation of eight species of predacious mirids (Hemiptera: Miridae) present in an apple orchard of Québec on the green apple aphid, two-spotted spider mite and European red mite were investigated. The daily consumption rates varied from 1–2 green apple aphids forHyaliodes vitripennis Say andCampylomma verbasci Meyer to 7–9 aphids forDeraeocoris fasciolus Knight andLepidopsallus minisculus Knight.H. vitripennis consumed significantly more mites than the other mirid species with 26 and 18 mites per day for the two-spotted spider mite and the European red mite respectively. The combined use ofH. vitripennis andL. minisculus is suggested for the control of phytophagous mites. This paper is contribution No. 335/91.06.02R, Research Station, Agriculture Canada, Saint-Jean-sur-Richelieu, Québec, Canada.     

A meat-based diet for rearing the predatory stinkbugsPodisus maculiventris andPodisus sagitta [Het.: Pentatomidae]

A diet based on bovine meat was evaluated as an alternative food source for rearing the predatory bugsPodisus maculiventris (Say) andPodisus sagitta (Fabricius). Thus far, 7 and 5 continuous generations of the respective species have been reared on this diet. In comparison to rearing on larvae of the greater wax moth,Galleria mellonella (L.), however, nymphal development was prolonged with 15–40% and adult weights were lower, reaching 72–82% of the control weights. Fecundity of females reared on the meat diet was reduced to about 1/3–1/2 of that of the control, but egg weight and egg fertility were comparable with those in cultures fed live prey. Results obtained for laboratory rearing on this medium were generally better forP. maculiventris than forP. sagitta.      

Isolation and characterization of 11 polymorphic microsatellite loci from <Emphasis Type="Italic">Fatsia polycarpa</Emphasis> (Araliaceae), an element of evergreen forests in Taiwan

Fatsia polycarpa Hayata (Araliaceae) is an element of evergreen forests at middle elevations in Taiwan, also representing the southern limitation in distribution of the genus. In this study, we described the development of 11 microsatellite loci from F. polycarpa in Taiwan for genetic studies. These new markers were tested in 20 individuals of 5 populations of the woody species. The number of alleles ranged from 9 to 18. The expected (H _E ) and observed (H _O ) heterozygosities were 0.80–0.95 and 0.10–0.75, respectively. Six of the 11 microsatellite loci are significantly deviated from Hardy–Weinberg expectations likely due to the population structure within samples. No linkage disequilibrium were observed from pairwise comparisons of loci. Chi-Chun Huang, Kuo-Hsiang Hung, and Tsai-Wen Hsu contributed equally to this article.     

Isolation of microsatellite markers in the Emys orbicularis complex and development of multiplex PCR amplification

We report the development of 15 new microsatellite markers for Emys orbicularis and Emys trinacris. A survey of 20 individuals showed that all loci are highly polymorphic with 3–14 alleles per locus. Additionally, 22 Glyptemys muhlenbergii primers were checked for cross-species amplification, with 14 being amplified successfully and polymorphic (2–14 alleles). A set of eight markers was selected and combined into two multiplex PCRs. Levels of genetic diversity were assessed in 648 individuals covering the complete distribution area. The number of alleles ranged from 13 to 24 and observed heterozygosity varied between 0.515 and 0.852.     

Isolation and characterization of 11 microsatellite loci from Camellia sinensis in Taiwan using PCR-based isolation of microsatellite arrays (PIMA)

We report 11 novel microsatellite primer pairs for the wild tea, Camellia sinensis (L.) O. Kuntze forma formosensis Kitamura. These simple sequence repeat markers were tested in 24 samples collected from wild tea populations, and in cultivars and C. japonica. The number of alleles ranged from 4 to18. The expected (H _E) and observed (H _O) heterozygosity were 0.687–0.946 and 0.042–0.792, respectively. All loci were significantly deviated from Hardy-Weinberg expectations due to the heterozygote deficiency, indicating a dramatic loss of genetic polymorphisms in the rare species. Significant LD was discovered in most loci. These primers may provide a tool for understanding demography and population structure in wild tea.     

rtpA, a gene encoding a bacterial two-component sensor kinase, determines pathogenic traits ofPseudomonas tolaasii, the causal agent of brown blotch disease of a cultivated mushroom,Pleurotus ostreatus

Pseudomonas tolaasii strain PT814 produces extracellular toxins, tolaasins, and a volatile toxin, tovsin, that are responsible for the induction of brown blotch and rotting, respectively, in a cultivated mushroom,Pleurotus ostreatus. Insertions of single transposon mini-Tn5Km 1 into the chromosome ofP. tolaasii strain PT814 generated mutants that are pleiotropically defective in tolaasin and protease production, and altered in colony morphology. The mutants, however, produce tovsin at the level of wild-type. Variants phenotypically similar to the pleiotropic mutants ofP. tolaasii strain PT814 spontaneously occurred inP. tolaasii strain S8501 at 22–30°C in vitro. The occurrence of variants was significantly reduced in the presence of extracts ofP ostreatus or at a temperature of 15–20°C. ThertpA gene (rtpA=regulator gene of tolaasin production and other pleiotropic traits) isolated from aP. tolaasii strain PT814 gene library restored the wild-type phenotype in both the mini-Tn5km 1 insertion and spontaneous mutants. mini-Tn5km 1 insertions were also located in the allele ofrtpA. Nucleotide sequencing of thertpA DNA revealed an open reading frame of 2,751 bp predicted to encode a protein consisting of 917 amino acid residues with a molecular mass of 100.6 kDa and displaying the conserved amino acid sequence of both sensor, and receiver domains of “bacterial two-component regulators”. The data suggest that the machinery responding to environmental stimuli is essential for the pathogenic interaction ofP. tolaasii with the mushroom.     

Validity of the gerreid fish,Gerres macracanthus Bleeker, 1854, with designation of a lectotype,and designation of a neotype forG. filamentosus Cuvier, 1829

Gerres macracanthus Bleeker, 1854, for many years having been explicitly or tentatively synonymized withG. filamentosus Cuvier, 1829, is redescribed as a valid species.Gerres macracanthus differs fromG. filamentosus in lacking vertical rows of dark ovoid spots on the body, having instead only indistinct vertical bands in both subadult and adult stages, in addition to shorter second and third anal fin spines (9.1–13.9% and 10.4–14.4% of standard length [SL] vs. 12.3–19.6% and 11.9–17.3% of SL), fewer ored lateral line scales (41–44 vs. 43–46) and fewer scales between the base of the 5th dorsal fin spine and the lateral line (4–5 vs. 4 1/2–5 1/2), and above and below the lateral line (5 1/2–6 1/2/9 1/2–10 1/2 vs. 6 1/2–7 1/2/10 1/2–11 1/2). AlthoughG. filamentosus has similarly, indistinct vertical bands on the body up to ca. 100 mm SL, specimens over ca. 100 mm SL develop diffuse ovoid spots in each vertical band. Furthermore,G. macracanthus is generally a smaller species, apparently attaining a maximum size of ca. 170 mm SL, compared with ca. 250 mm SL forG. filamentosus. Formerly known from the Philippines, Indonesia, New guinea, India and the Arabian Gulf,G. macracanthus is newly-recorded from Japan, China, the Gulf of Thailand, the Red Sea and South Africa. A lectotype and three paralectotypes are designated forG. macracanthus Bleeker, 1854, in addition to a neotype forG. filamentosus Cuvier, 1829.     

Development of 12 novel microsatellite loci in a traditional Chinese medicinal plant, Epimedium brevicornum and cross-amplification in other related taxa

A total of 12 polymorphic microsatellite loci were developed and characterized for a Chinese medicinal plant, Epimedium brevicornum (Berberidaceae). A genomic DNA enrichment protocol was used to isolate microsatellite loci and polymorphism was explored using 38 individuals from one natural population. The observed number of alleles ranged from 2–14. The ranges of observed and expected heterozygosity were 0.00–0.83 and 0.15–0.88, respectively. In addition, successful cross-species amplification of this set of microsatellite markers in other four medicinal Epimedium species suggested that they would provide a useful tool for the genetic and conservation studies of Epimedium species.     

In vitro rearing ofExorista larvarum on tissue culture-based diets

Exorista (=Tachina) larvarum (L.) (Diptera, Tachinidae), a polyphagous parasitoid that attacksLymantria dispar L. andHyphantria cunea (Drury), was rearedin vitro from egg to adult on four tissue culture media-based diets (TMM-FH, SCHNEIDER'S, EX-CELL 400, and SF-900). The kind of tissue culture media in the diets did not influence the adult yield (34 to 55%) and puparium weight (26–27 mg). Adult yield and the puparium weight ofE. larvarum developed on TNM-FH and SCHNEIDER'S-based diets containing different amounts ofGalleria mellonella pupal extract (PE) (0, 1.25, 2.5 and 5%), were lower on diets without PE. In diets without PE development times from oviposition to adult emergence, were shorter on TNM-FH (19 days) than on SCHNEIDER'S-based diet (25–26 days). The adults that developed on artificial diets were able to parasitize the factitious hostG. mellonella and produce viable progeny. The results demonstrate thatE. larvarum is the most promising parasitoid ever studied forin vitro mass production.     

Paleobiology of the oligopithecines,the earliest known anthropoid primates

Anthropoid primates of the subfamily Oligopithecinae are late Eocene in age, and have a known distribution of Northeast Africa and the Arabian Peninsula. Body sizes of the three known oligopithecine species are estimated from allometric molar size regressions to be 700–1000 g forOligopithecus savagei, 600–900 g forCatopithecus browni, and 500 g for the least well-known and smallest species,Proteopithecus sylviae. Occlusal features of the molar teeth, considered in conjunction with body size, suggest that all three species were frugivorous and insectivorous. The orbital size ofCatopithecus indicates a diurnal activity cycle. A relatively broad interobital region in this species may indicate prosimian-like or callitrichid-like olfactory adaptations. Structural features of the crushed skull suggest thatCatopithecus had a smaller cranial capacity than those of extant anthropoids with a similar body size. Fossil plants and birds from localities yielding oligopithecines suggest a wet, warm, tropical, forested, swampy environment. These paleobiological inferences about the extinct oligopithecines are discussed in relation to questions about primate adaptations near the prosimian-anthropoid transition.     

Isolation and characterization of polymorphic nuclear microsatellite loci in <Emphasis Type="Italic">Taxus baccata</Emphasis> L.

Seven polymorphic nuclear microsatellite markers for Taxus baccata L. (English yew) were developed using an enriched-library method. An additional polymorphic SSR was obtained by testing eight primer pairs from the congeneric species Taxus sumatrana. Mendelian inheritance for the seven Taxus baccata SSRs was proved by genotyping 17 individuals and 124 megagametophytes (conifer seed haploid tissue). A total of 96 individuals from 5 different populations (10–26 samples per population) were used to estimate genetic diversity parameters. High levels of genetic diversity, with values ranging from 0.533 to 0.929 (6–28 alleles per SSR) were found. No linkage disequilibrium between pairs of loci was detected. All loci but one showed significant departures from Hardy–Weinberg equilibrium. Excess of homozygosity was probably due to high inbreeding in English yew populations, an outcome of low effective population size and/or fragmented distribution. Highly polymorphic SSRs will be used to conduct population genetic studies at different geographical scales and to monitor gene flow.     

Isolation and characterization of 12 microsatellite loci from <Emphasis Type="Italic">Suzukia shikikunensis</Emphasis> (Lamiaceae), a genus endemic to Taiwan and Ryukyus

Suzukia shikikunensis Kudo is an endemic plant in Taiwan and suffers habitat destruction caused by human overexploitation. In this study, we developed 12 microsatellite primer pairs for genetic study. These markers were screened for 24 samples collected from wild populations distributed in Taiwan, and for a sister species S. luchuensis collected from Yonaguni and Lutao Islands. The number of alleles ranged from 5 to 14. The expected (H _E) and observed (H _O) heterozygosities were 0.65–0.922 and 0–0.625, respectively. All loci were significantly deviated from Hardy–Weinberg equilibrium due to the heterozygote deficiency. These primers amplifying microsatellites in the two species may provide a useful tool for population genetics to establish conservation strategy.