Mancae of the parasitic cymothoid isopod, <Emphasis Type="Italic">Anilocra apogonae</Emphasis>: early life history,host-specificity,and effect on growth and survival of preferred young cardinal fishes

Juvenile parasitic cymothoid isopods (mancae) can injure or kill fishes, yet few studies have investigated their biology. While the definitive host of the adult cymothoids is usually a single host from a particular fish species, mancae may use so-called optional intermediate hosts before settling on the definitive host. Little, however, is known about these early interactions. The cymothoid isopod, Anilocra apogonae, infests the definitive host, Cheilodipterus quinquelineatus. This study examined their host preference among potential optional intermediate hosts. Their effect on the growth and mortality of the young of three apogonid fishes, including the definitive host, was investigated. The number of mancae produced per brood was positively correlated with female length. When given a choice of intermediate hosts, significantly more mancae attached to Apogon trimaculatus (Apogonidae) than to Apogon nigrofasciatus. When presented with Ap. trimaculatus and Pomacentrus amboinensis (Pomacentridae), mancae only attached to Ap. trimaculatus suggesting that mancae may show a taxonomic affiliation with preferred hosts. Mancae fed on all three apogonid species, with C. quinquelineatus being fed on earlier than Ap. trimaculatus and Ap. nigrofasciatus. Mancae feeding frequency, adjusted for fish survival, was lowest on C. quinquelineatus and highest on Ap. trimaculatus. Infested apogonids had reduced growth and increased mortality compared with uninfested fish. A. apogonae mancae can use several species of young apogonid fishes as optional intermediate hosts. Via reduced growth and increased mortality, mancae have the potential to negatively influence definitive host populations and also other young species of apogonid fishes.     

STRONG GENETIC DIVERGENCE AMONG POPULATIONS OF A MARINE FISH WITH LIMITED DISPERSAL, ACANTHOCHROMIS POLYACANTHUS, WITHIN THE GREAT BARRIER REEF AND THE CORAL SEA

Abstract Acanthochromis polyacanthus is an unusual tropical marine damselfish that uniquely lacks pelagic larvae and has lost the capacity for broad‐scale dispersal among coral reefs. On the modern Great Barrier Reef (GBR), three color morphs meet and hydridize at two zones of secondary contact. Allozyme electrophoreses revealed strong differences between morphs from the southern zone but few differences between morphs from the northern counterpart, thus suggesting different contact histories. We explore the phylogeography of Acanthochromis polyacanthus with mitochondrial cytochrome b region sequences (alignment of 565 positions) obtained from 126 individuals representing seven to 12 fish from 13 sites distributed over 12 reefs of the GBR and the Coral Sea. The samples revealed three major clades: (1) black fish collected from the southern GBR; (2) bicolored fish collected from the GBR and one reef (Osprey) from the northern Coral Sea; (3) black and white monomorphs collected from six reefs in the Coral Sea. All three clades were well supported (72–100%) by bootstrap analyses. Sequence divergences were very high between the major clades (mean = 7.6%) as well as within them (2.0–3.6%). Within clades, most reefs segregated as monophyletic assemblages. This was revealed both by phylogenetic analyses and AMOVAs that showed that 72–90% of the variance originated from differences among groups, whereas only 5–13% originated within populations. These patterns are discussed in relation to the known geological history of coral reefs of the GBR and the Coral Sea. Finally, we ask whether the monospecific status of Acanthochromis should be revisited because the sequence divergences found among our samples is substantially greater than those recorded among well‐recognized species in other reef fishes.     

Microbiological assessment of a disease outbreak on corals from Magnetic Island (Great Barrier Reef, Australia)

Unusual disease lesions were observed in Montipora corals on the fringing reef of Magnetic Island (Great Barrier Reef, Australia) following a period of high water temperature in early January 2002. Tissue death in Montipora spp. appeared as a black layer that spread rapidly across the colony surface, though this appeared as the final phase of disease progression (with three previous disease phases now identified, S. Anthony, unpublished). Culture and molecular-based microbial analysis of this layer did not identify a likely microbial pathogen. Despite this, DNA sequencing of microbial 16S rDNA indicated a shift in the bacterial population associated with affected coral tissue. A clone library of the healthy coral sample predominantly contained sequences within the -Proteobacteria. A disease coral sample representing the margin of the black lesion and healthy coral tissue was dominated by sequences, which demonstrated low sequence identity to a range of -Proteobacteria, -Proteobacteria and cyanobacteria. The microbes identified in the diseased Montipora spp. samples are likely to be opportunistic rather than the causative agent of the observed lesion. Studies are in progress to further characterise the ecology of this disease and describe the potential microbial pathogen(s).     

Comparative analysis of visual census techniques for highly mobile,reef-associated piscivores (Carangidae)

Synopsis Visual census techniques applicable to coral reef-associated fishes are reviewed and the results of field tests using six (three transect-based and three point-based) to estimate the density of carangids at Carter Reef, Great Barrier Reef, are presented. Data are analyzed with respect to the effects of observers on fishes seen, observer biasses, precision of the estimates and, as far as possible, accuracy of the estimates. Transects generate estimates of population density and structure different from those of point-based estimates. Various point-based census methods, however, generate density estimates consistent with one another and are generally more precise than transect-based methods. The results of the field study obviously cannot be generalized to other quite different types of reef fishes. The problems we encountered and a review of the techniques used to census reef fishes visually in the past, however, suggest that: (1) interval counts, such as Rapid Visual Census techniques, are likely to be inaccurate and difficult to compare; (2) for species with high probabilities of detection, instantaneous area counts appear to be the most effective way to estimate densities, whereas cryptic species are best censused using instantaneous variable distance point counts, and (3) strip transects may often be less efficient than line transects, due to inconstant levels of subject detectability.     

Morphological structure in a reef fish assemblage

Two key morphological traits, horizontal gape and eye diameter, were measured in a large representative group of coral reef fishes. These morphological traits were used concurrently to assess their utility in exploring abilities of coral reef fishes at an assemblage level. A total of 1,218 specimens from 181 species found on the Great Barrier Reef were examined. Cryptobenthic fishes were included to provide a broader representation of reef fish groups. In the analyses, a clear morphological distinction was found between nocturnal and diurnal fishes. Nocturnal fishes had larger relative horizontal gapes and relative eye diameters by factors of 1.6 and 1.5, respectively. A bivariate plot separated into quadrants was used to assess the implications of morphological variation. The morphological measures reflected distinct ecological traits in each quadrant. Whilst nocturnal fishes had large relative gapes and eye diameters, diurnal predators and detritivores had the same wide gapes, but small relative eye diameters. Highly selective, visual feeders such as the Chaetodontidae and Pseudochromidae had large eyes and small gapes, whilst non-selective feeders with low visual dependence such as the grazing herbivores (Acanthuridae, Siganidae, etc.) had both small eye diameters and gape sizes. The analysis proved to be robust enough to apply to a wide assemblage, but with enough subtlety to distinguish morphological differences within individual families. The methods used in this study may have broad applications to other fish assemblages, both fossil and extant. Electronic supplementary material  The online version of this article (doi:) contains supplementary material, which is available to authorized users.     

Holocene evolution of the granite based Lizard Island and MacGillivray Reef systems, Northern Great Barrier Reef

Radiocarbon dating of seven drill cores from both the windward Lizard Island fringing reef and the windward and leeward margins of MacGillivray platform reef, Northern Great Barrier Reef Province, reveal the Holocene evolution of these two mid shelf coral reefs. The windward margin at Lizard Island started growing approximately 6,700 calendar years before present (cal yr BP) directly on an assumed granite basement and approached present day sea level approximately 4,000 cal yr BP. Growth of the windward margin at MacGillivray Reef was initiated by 7,600 cal yr BP and approached present day sea level by approximately 5,600 cal yr BP. The leeward margin at MacGillivray was initiated by 8,200 cal yr BP also directly on an assumed granite basement, but only approached sea level relatively recently, between 260 and 80 cal yr BP. None of the cores penetrated the Holocene-Pleistocene unconformity. The absence of Pleistocene reefal deposits, at 15 m depth in the cores from MacGillivray Reef, raises the possibility that the shelf in this region has subsided relative to modern day sea level by at least 15 m since the last interglacial [125,000 years ago (ka)].     

Stabilisation of intertidal cobbles and gravels by Goniastrea aspera: an analogue for substrate colonisation during marine transgressions?

There is a widespread perception that coral larvae require stable (lithified) rock substrates to settle during reef initiation, and that these substrates are typically carbonate. However, reef core data show that reef establishment can also occur directly above a wide range of unlithified, non-carbonate sediment substrates, including relict alluvial sands and gravels. The mechanisms by which these lithic substrates are colonised and stabilised are not, however, well documented. Here, we describe such processes from an intertidal setting on the inner-shelf of the Great Barrier Reef, in a setting directly analogous to that which would have existed around many inner-shelf high islands during the post-glacial marine transgression when mid-Holocene reef initiation was taking place. Communicated by Geology Editor Dr. Bernhard Riegl     

Genetic structure of a reef-building coral from thermally distinct environments on the Great Barrier Reef

Adaptation to localised thermal regimes is facilitated by restricted gene flow, ultimately leading to genetic divergence among populations and differences in their physiological tolerances. Allozyme analysis of six polymorphic loci was used to assess genetic differentiation between nine populations of the reef-building coral Acropora millepora over a latitudinal temperature gradient on the inshore regions of the Great Barrier Reef (GBR). Small but significant genetic differentiation indicative of moderate levels of gene flow (pairwise F _ST 0.023 to 0.077) was found between southern populations of A. millepora in cooler regions of the GBR and the warmer, central or northern GBR populations. Patterns of genetic differentiation at these putatively neutral allozyme loci broadly matched experimental variation in thermal tolerance and were consistent with local thermal regimes (warmest monthly-averages) for the A. millepora populations examined. It is therefore hypothesized that natural selection has influenced the thermal tolerance of the A. millepora populations examined and greater genetic divergence is likely to be revealed by examination of genetic markers under the direct effects of natural selection.     

Learning to predict large-scale coral bleaching from past events: A Bayesian approach using remotely sensed data,in-situ data,and environmental proxies

Ocean warming and coral bleaching are patchy phenomena over a wide range of scales. This paper is part of a larger study that aims to understand the relationship between heat stress and ecological impact caused by the 2002-bleaching event in the Great Barrier Reef (GBR). We used a Bayesian belief network (BBN) as a framework to refine our prior beliefs and investigate dependencies among a series of proxies that attempt to characterize potential drivers and responses: the remotely sensed environmental stress (sea surface temperature — SST); the geographic setting; and topographic and ecological attributes of reef sites for which we had field data on bleaching impact. Sensitivity analyses helped us to refine and update our beliefs in a manner that improved our capacity to hindcast areas of high and low bleaching impact. Our best predictive capacity came by combining proxies for a sites heat stress in 2002 (remotely sensed), acclimatization temperatures (remote sensed), the ease with which it could be cooled by tidal mixing (modeled), and type of coral community present at a sample of survey sites (field data). The potential for the outlined methodology to deliver a transparent decision support tool to aid in the process of identifying a series of locations whose inclusion in a network of protected areas would help to spread the risk of bleaching is discussed.     

Elemental signatures of Acanthochromis polyacanthus otoliths from the Great Barrier Reef have significant temporal, spatial, and between-brood variation

We evaluated the spatial and temporal scales over which otolith signatures varied in a reef fish on the Great Barrier Reef (GBR) using the non-dispersing damselfish Acanthochromis polyacanthus. We found a robust multi-element separation in otolith signatures from reef clusters in the northern and southern GBR. Variance components indicated that this spatial scale accounted for the majority of the variation in two elemental ratios (Ba/Ca and Sr/Ca) over the 2 years of the study. There was also significant variation in elemental signatures between otoliths collected over two consecutive years, as well as within a season. Individual reefs within clusters were less distinguishable based on otolith chemistry and were probably observed by differences within reefs (among sites and broods within sites). These results indicate that it may be difficult to determine the reef of origin for individual fish using otolith chemistry, while determining natal region seems a realistic goal.     

Resolution of the early life history of a reef fish using otolith chemistry

We used the elemental signatures in otoliths of the damselfish Pomacentrus coelestis as a proxy for conditions experienced prior to settlement. Fish from the southern Great Barrier Reef (GBR) differed in their pre-settlement otolith chemistry, indicating that they had occupied different water masses during their pelagic stage, thus suggesting multiple larval sources. Fish from reefs in the northern GBR did not differ greatly in their pre-settlement otolith chemistry, suggesting a single larval source. Using near-natal signatures, we determined that ~67% of these signatures matched the signature established for Lizard Island (LZ), suggesting LZ could be a source reef. However, these results could also be the result of poor separation among reefs caused by reefs sharing water masses. Otolith chemistry also revealed that 50–70% of all fish examined settled on the reef the day they encountered it, while some fish spent up to 4 days near the reef prior to settlement.     

Effects of coral transplantation and giant clam restocking on the structure of fish communities on degraded patch reefs

Active restoration is being practiced to supplement conservation activities for the purpose of reversing the trend of reef degradation. In the last decade, the feasibility of different restoration approaches such as coral transplantation and restocking of other marine biota has been the focus of research and relatively few have examined experimentally its effects on the resultant communities. In this study, coral transplantation and giant clam restocking were applied on 25 degraded patch reefs (~ 25 m²) inside a marine sanctuary in Pangasinan, northwestern Philippines to examine their effects on the community structure of reef fishes. Five interventions or treatments were employed: 1) “coral” consisted of transplantation of a combination of Acropora spp. and Pocillopora spp. on concrete blocks; 2) “clam” consisted of restocking of Tridacna gigas; 3) “clam+coral” consisted of restocking of T. gigas with Acropora spp. transplanted on their shells; 4) “shell” consisted of deployment of T. gigas shells; and 5) “control” consisted of no intervention. Fish communities on the patch reefs were monitored monthly for 3 months before the intervention and were monitored further for 11 months after the intervention, including 1 recruitment season. After the intervention, the coral cover and the “other biota” category increased in the coral and clam+coral treatments, due to the transplanted corals and deployed giant clams. Consequently, the complexity of the substrate was enhanced. A month after the intervention, a rapid increase in the abundance and species richness of reef fishes on the coral, clam+coral and clam treatments was observed compared to the shell and control treatments. A change in species composition of reef fish assemblage was also apparent in the coral and clam+coral treatments relative to the clam, shell and control, especially 4 months after the intervention. The present experiment demonstrates the feasibility of improving the condition of degraded patch reefs, which can subsequently enhance the fish community. Results also show the importance of the underlying substratum and the abundance of live corals and clams to reef fishes.