Conservation value of degraded habitats for forest birds in southern Peninsular Malaysia

Clearance of tropical forest for agricultural purposes is generally assumed to seriously threaten the survival of forest species. In this study, we quantified the conservation value, for forest bird species, of three degraded habitat types in Peninsular Malaysia, namely rubber tree plantations, oil palm plantations, and open areas. We surveyed these degraded habitats using point counts to estimate their forest bird species richness and abundance. We assessed whether richness, abundance, and activities of different avian dietary groups (i.e. insectivores and frugivores) varied among the habitats. We identified the critical habitat elements that accounted for the distribution of forest avifauna in these degraded habitats. Our results showed that these habitats harboured a moderate fraction of forest avifauna (approximately 46–76 species) and their functions were complementary (i.e. rubber tree plantations for moving; open habitats for perching; shrubs in oil palm plantations for foraging). In terms of species richness and abundance, rubber tree plantations were more important than oil palm plantations and open habitats. The relatively high species richness of this agricultural landscape was partly due to the contiguity of our study areas with extensive forest areas. Forecasts of forest-species presence under various canopy cover scenarios suggest that leaving isolated trees among non-arboreal crops could greatly attract relatively tolerant species that require tree canopy. The conservation value of degraded habitats in agricultural landscapes seems to depend on factors such as the type of crops planted and distance to primary forest remnants.     

Minimizing the biodiversity impact of Neotropical oil palm development

Oil palm agriculture is rapidly expanding in the Neotropics, at the expense of a range of natural and seminatural habitats. A key question is how this expansion should be managed to reduce negative impacts on biodiversity. Focusing on the Llanos of Colombia, a mixed grassland–forest system identified as a priority zone for future oil palm development, we survey communities of ants, dung beetles, birds and herpetofauna occurring in oil palm plantations and the other principal form of agriculture in the region – improved cattle pasture – together with those of surrounding natural forests. We show that oil palm plantations have similar or higher species richness across all four taxonomic groups than improved pasture. For dung beetles, species richness in oil palm was equal to that of forest, whereas the other three taxa had highest species richness in forests. Hierarchical modelling of species occupancy probabilities indicated that oil palm plantations supported a higher proportion of species characteristic of forests than did cattle pastures. Across the bird community, occupancy probabilities within oil palm were positively influenced by increasing forest cover in a surrounding 250 m radius, whereas surrounding forest cover did not strongly influence the occurrence of other taxonomic groups in oil palm. Overall, our results suggest that the conversion of existing improved pastures to oil palm has limited negative impacts on biodiversity. As such, existing cattle pastures of the Colombian Llanos could offer a key opportunity to meet governmental targets for oil palm development without incurring significant biodiversity costs. Our results also highlight the value of preserving remnant forests within these agricultural landscapes, protecting high biodiversity and exporting avian ‘spill‐over’ effects into oil palm plantations.     

Contemporary and historic factors influence differently genetic differentiation and diversity in a tropical palm

Population genetics theory predicts loss in genetic variability because of drift and inbreeding in isolated plant populations; however, it has been argued that long-distance pollination and seed dispersal may be able to maintain gene flow, even in highly fragmented landscapes. We tested how historical effective population size, historical migration and contemporary landscape structure, such as forest cover, patch isolation and matrix resistance, affect genetic variability and differentiation of seedlings in a tropical palm (Euterpe edulis) in a human-modified rainforest. We sampled 16 sites within five landscapes in the Brazilian Atlantic forest and assessed genetic variability and differentiation using eight microsatellite loci. Using a model selection approach, none of the covariates explained the variation observed in inbreeding coefficients among populations. The variation in genetic diversity among sites was best explained by historical effective population size. Allelic richness was best explained by historical effective population size and matrix resistance, whereas genetic differentiation was explained by matrix resistance. Coalescence analysis revealed high historical migration between sites within landscapes and constant historical population sizes, showing that the genetic differentiation is most likely due to recent changes caused by habitat loss and fragmentation. Overall, recent landscape changes have a greater influence on among-population genetic variation than historical gene flow process. As immediate restoration actions in landscapes with low forest amount, the development of more permeable matrices to allow the movement of pollinators and seed dispersers may be an effective strategy to maintain microevolutionary processes.     

Neotropical moth assemblages degrade due to oil palm expansion

Oil palm is one of the most rapidly expanding crops throughout the tropics, yet little is known about its impacts on Neotropical invertebrate biodiversity. Responses of insect assemblages to land conversion may substantially vary among taxa. We assessed geometrid and arctiine moth assemblages in a Costa Rican human dominated landscape, where oil palm plantations are now the second most common land cover. Moths were sampled during 6 months with automatic traps in the interior and margin of old-growth forests, young secondary forests and oil palm plantations in a 30 km² area. Our results show that richness and diversity of both taxa were severely reduced in oil palm compared to all other habitats. Geometrid abundance was highest in forest interiors and lowest in oil palm, while arctiine numbers did not differ between habitats. Dominance was highest in oil palm plantations, where one arctiine species and one geometrid species accounted for over 40% of total abundance in each of their respective taxa. Species composition was distinct in oil palm and forest interior sites, and depicted a gradient of habitat disturbance in ordination space that was strongly related to vegetation diversity and structure. This study demonstrates that oil palm plantations are not a suitable habitat for these moth taxa. Whilst some arctiine species seem adapted to disturbed habitats, geometrids were more dependent on old-growth forests, showing higher bioindicator potential. In the face of accelerated oil palm expansion, conservation strategies should focus on protecting old-growth forest remnants, as well as increasing species diversity and structural complexity of degraded habitats.     

Microclimate and habitat heterogeneity through the oil palm lifecycle

The rapid expansion of oil palm cultivation and corresponding deforestation has invoked widespread concern for biodiversity in Southeast Asia and throughout the tropics. However, no study explicitly addresses how habitat characteristics change when (1) forest is converted to oil palm, or (2) through the dynamic 25–30-year oil palm lifecycle. These two questions are fundamental to understanding how biodiversity will be impacted by oil palm development.Our results from a chronosequence study on microclimate and vegetation structure in oil palm plantations surrounding the Pasoh Forest Reserve, Peninsular Malaysia, show dramatic habitat changes when forest is converted to oil palm. However, they also reveal substantial habitat heterogeneity throughout the plantation lifecycle. Oil palm plantations are created by clear-cutting forests and then terracing the land. This reduces the 25 m-tall forest canopy to bare ground with a harsh microclimate. Eight-year-old oil palm plantations had 4 m open-canopies; 22-year-old plantations had 13 m closed-canopies. Old plantations had significantly more buffered microclimates than young plantations. Understory vegetation was twice as tall in young plantations, but leaf litter depth and total epiphyte abundance were double in old plantations. Nonetheless, leaf litter coverage was patchy throughout the oil palm life cycle due to the stacking of all palm fronds. Overall, oil palm plantations were substantially hotter (+2.84 °C) and drier (+0.80 hPa vapor pressure deficit), than forests during diurnal hours. However, there were no nocturnal microclimate differences between forests and plantations. Finally, we describe how the variable retention of old palm trees during crop rotation can retain habitat features and maintain more stable microclimate conditions than clear-cutting senescent plantations. We discuss the implications of habitat changes for biodiversity and introduce three methods to utilize temporal habitat heterogeneity to enhance the quality of the oil palm landscape matrix.     

Low genetic diversity in the bottlenecked population of endangered non-native banteng in northern Australia

Undomesticated (wild) banteng are endangered in their native habitats in Southeast Asia. A potential conservation resource for the species is a large, wild population in Garig Gunak Barlu National Park in northern Australia, descended from 20 individuals that were released from a failed British outpost in 1849. Because of the founding bottleneck, we determined the level of genetic diversity in four subpopulations in the national park using 12 microsatellite loci, and compared this to the genetic diversity of domesticated Asian Bali cattle, wild banteng and other cattle species. We also compared the loss of genetic diversity using plausible genetic data coupled to a stochastic Leslie matrix model constructed from existing demographic data. The 53 Australian banteng sampled had average microsatellite heterozygosity (HE) of 28% compared to 67% for outbred Bos taurus and domesticated Bos javanicus populations. The Australian banteng inbreeding coefficient (F) of 0.58 is high compared to other endangered artiodactyl populations. The 95% confidence bounds for measured heterozygosity overlapped with those predicted from our stochastic Leslie matrix population model. Collectively, these results show that Australian banteng have suffered a loss of genetic diversity and are highly inbred because of the initial population bottleneck and subsequent small population sizes. We conclude that the Australian population is an important hedge against the complete loss of wild banteng, and it can augment threatened populations of banteng in their native range. This study indicates the genetic value of small populations of endangered artiodactyls established ex situ.     

Impacts of oil palm plantations on changes in environmental heterogeneity and Heteroptera (Gerromorpha and Nepomorpha) diversity

This study evaluates the effects of oil palm plantations on environmental heterogeneity and diversity (α and β) of aquatic Heteroptera (semi-aquatic and aquatic species) in Amazon streams. We assessed eight streams located in forested areas and 12 in oil palm plantations. As expected, oil palm areas had lower environmental heterogeneity, despite the presence of riparian vegetation. Heteropteran communities differed in forest and oil palm areas, however, only semi-aquatic bugs were affected by environmental variables. Streams in oil palm plantations had lower α-diversity and distinct community structures when compared to forest sites. Oil palm plantation did not affect the β-diversity of semi-aquatic bugs, however, there was increased β-diversity of aquatic bugs in these areas. These results reflect the impacts of environmental heterogeneity generated by plantations next to riparian vegetation, inducing local diversity loss. Effects on β-diversity differed among groups of Heteroptera, mainly due to the differences in the life histories of each group. Semi-aquatic bugs seem to undergo environmental filtering, while aquatic bugs can be structured by limiting similarity. Thus, the management and land conservation strategies adopted to preserve ecosystems within oil palm plantations were insufficient for the protection of aquatic heteropteran communities. In summary, such conservation policies should account for the particularities of different groups of the aquatic ecosystem; especially for aquatic fauna, which are usually overlooked in conservation policies for the Brazilian Amazon.     

Poor Prospects for Avian Biodiversity in Amazonian Oil Palm

Expansion of oil palm plantations across the humid tropics has precipitated massive loss of tropical forest habitats and their associated speciose biotas. Oil palm plantation monocultures have been identified as an emerging threat to Amazonian biodiversity, but there are no quantitative studies exploring the impact of these plantations on the biome’s biota. Understanding these impacts is extremely important given the rapid projected expansion of oil palm cultivation in the basin. Here we investigate the biodiversity value of oil palm plantations in comparison with other dominant regional land-uses in Eastern Amazonia. We carried out bird surveys in oil palm plantations of varying ages, primary and secondary forests, and cattle pastures. We found that oil palm plantations retained impoverished avian communities with a similar species composition to pastures and agrarian land-uses and did not offer habitat for most forest-associated species, including restricted range species and species of conservation concern. On the other hand, the forests that the oil palm companies are legally obliged to protect hosted a relatively species-rich community including several globally-threatened bird species. We consider oil palm to be no less detrimental to regional biodiversity than other agricultural land-uses and that political pressure exerted by large landowners to allow oil palm to count as a substitute for native forest vegetation in private landholdings with forest restoration deficits would have dire consequences for regional biodiversity.     

Spiders in canopy and ground microhabitats are robust to changes in understory vegetation management practices in mature oil palm plantations (Riau,Indonesia)

Conversion of natural habitats to oil palm agriculture has caused declines in biodiversity and changes in ecosystem functions. To preserve biodiversity we must protect natural habitats, but once oil palm plantations are established, developing more-environmentally friendly management strategies could support higher levels of within-plantation biodiversity and boost the delivery of ecosystem services, possibly increasing oil palm productivity. In this study, we use a before-after control-impact (BACI) experiment to test whether three understory vegetation management strategies affect spider abundance, species richness, and species-level community composition in canopy and ground microhabitats in mature oil palm plantations. Our treatments encompassed the range of current management practices and included heavy applications of herbicides to eliminate all understory vegetation, maintaining some understory vegetation using business-as-usual herbicide applications, and enhancing understory vegetation by not applying any herbicides. We focussed on spiders, as they are both biologically and economically important in oil palm plantations, owing to their important pest control services. We identified more than 1000 spiders, representing 20 families and 83 morphospecies. The treatments did not affect any aspects of spider biodiversity, although the abundance and species richness of canopy-dwelling spiders changed between pre- and post-treatment sample periods, independent of treatment. Our findings indicate that differences in understory vegetation management practices do not affect spiders, or the pest management services that they provide, in mature oil palm plantations. As such, more extreme changes in management would probably be required to enhance spider biodiversity in oil palm plantations in the long-term. Further studies are needed to determine the practicalities of such approaches, to assess how changes in vegetation management practices affect spiders in additional microhabitats, and how the impacts of such approaches vary across the 20–30 year oil palm commercial life cycle.     

Matrix composition and landscape heterogeneity structure multiple dimensions of biodiversity in temperate forest birds

Quantifying how human-modified landscapes shape the distribution of biodiversity is critical for developing effective conservation strategies. To address this, we evaluated three hypotheses (habitat area, habitat configuration and matrix heterogeneity hypotheses) that predict responses of biodiversity to landscape structure in human-modified landscapes. We compared characteristics of landscape structure that influence taxonomic (TD), functional (FD), and phylogenetic (PD) dimensions of biodiversity of breeding birds in temperate forests. Relationships between biodiversity and landscape structure were assessed at multiple spatial scales for 20 forest interior sites in northeastern USA. We assessed if relationships with landscape structure were consistent among dimensions and assemblages of different groups (residents, migrants and all birds). Relationships between dimensions of biodiversity and landscape structure were more prevalent for FD and PD than for TD. Forest amount and configuration were rarely associated with any dimensions of biodiversity. In contrast, the identity of the matrix and heterogeneity of the landscape were frequently associated with biodiversity, but relationships differed among groups of birds. For example, FD of all birds was associated positively with landscape diversity but FD of residents was associated negatively with landscape diversity, suggesting that landscape diversity surrounding forests may increase overall FD of birds but that not all groups of species respond similarly. Indeed, biodiversity of migrants was only weakly related to landscape structure. Differences among relationships to landscape structure for bird groups and spatial scales suggests that management plans should consider local decisions within a regional framework to balance potentially conflicting needs of species groups in human-dominated landscapes.     

Connectivity and gene flow among Eastern Tiger Salamander (Ambystoma tigrinum) populations in highly modified anthropogenic landscapes

Fragmented landscapes resulting from anthropogenic habitat modification can have significant impacts on dispersal, gene flow, and persistence of wildlife populations. Therefore, quantifying population connectivity across a mosaic of habitats in highly modified landscapes is critical for the development of conservation management plans for threatened populations. Endangered populations of the eastern tiger salamander (Ambystoma tigrinum) in New York and New Jersey are at the northern edge of the species’ range and remaining populations persist in highly developed landscapes in both states. We used landscape genetic approaches to examine regional genetic population structure and potential barriers to migration among remaining populations. Despite the post-glacial demographic processes that have shaped genetic diversity in tiger salamander populations at the northern extent of their range, we found that populations in each state belong to distinct genetic clusters, consistent with the large geographic distance that separates them. We detected overall low genetic diversity and high relatedness within populations, likely due to recent range expansion, isolation, and relatively small population sizes. Nonetheless, landscape connectivity analyses reveal habitat corridors among remaining breeding ponds. Furthermore, molecular estimates of population connectivity among ponds indicate that gene flow still occurs at regional scales. Further fragmentation of remaining habitat will potentially restrict dispersal among breeding ponds, cause the erosion of genetic diversity, and exacerbate already high levels of inbreeding. We recommend the continued management and maintenance of habitat corridors to ensure long-term viability of these endangered populations.     

Population structure and landscape genetics in the endangered subterranean rodent Ctenomys porteousi

In order to devise adequate conservation and management strategies for endangered species, it is important to incorporate a reliable understanding of its spatial population structure, detecting the existence of demographic partitions throughout its geographical range and characterizing the distribution of its genetic diversity. Moreover, in species that occupy fragmented habitats it is essential to know how landscape characteristics may affect the genetic connectivity among populations. In this study we use eight microsatellite markers to analyze population structure and gene flow patterns in the complete geographic range of the endangered rodent Ctenomys porteousi. Also, we use landscape genetics approaches to evaluate the effects of landscape configuration on the genetic connectivity among populations. In spite of geographical proximity of the sampling sites (8–27 km between the nearest sites) and the absence of marked barriers to individual movement, strong population structure and low values of gene flow were observed. Genetic differentiation among sampling sites was consistent with a simple model of isolation by distance, where peripheral areas showed higher population differentiation than those sites located in the central area of the species’ distribution. Landscape genetics analysis suggested that habitat fragmentation at regional level has affected the distribution of genetic variation among populations. The distance of sampling sites to areas of the landscape having higher habitat connectivity was the environmental factor most strongly related to population genetic structure. In general, our results indicate strong genetic structure in C. porteousi, even at a small spatial scale, and suggest that habitat fragmentation could increase the population differentiation.     

Migratory bird community structure in oil palm (Elaies guineensis) plantations and native forest fragments in southern Mexico

Oil palm (Elaies guineensis) plantations are among the fastest growing agroecosystems in the Neotropics, but little is known about how Neotropical birds use oil palm habitats. To better understand the potential value of oil palm as an overwintering habitat for migratory birds, we surveyed birds in oil palm and native forest remnants in Tabasco, Mexico, from 19 December 2017 to 27 March 2018. We collected data on bird abundance and vegetative structure and used generalized linear models and multivariate analysis to assess how oil palm development influenced migrant bird diversity, community assemblages, and abundance. We found that species richness of migratory birds tended to be higher in forest patches than in oil palm, that community assemblages of migratory birds differed between native forest and oil palm plantations, and that differences in migratory bird abundance, and subsequent changes in community assemblages were driven by differences between native forest and oil palm plantations in vegetative structure. The bird community of native forest was characterized by migrant species sensitive to forest loss that forage low in the understory and in the leaf litter, whereas the bird community of oil palm plantations was represented by generalist species that occupy a wider range of foraging niches. Our results suggest that most species of migrant birds responded positively to several forest structural features and that integrating more native trees and increasing the amount of understory vegetation in oil palm plantations may increase the value of working landscapes for migratory birds.     

Forest Loss and the Biodiversity Threshold: An Evaluation Considering Species Habitat Requirements and the Use of Matrix Habitats

Habitat loss is the main driver of the current biodiversity crisis, a landscape-scale process that affects the survival of spatially-structured populations. Although it is well-established that species responses to habitat loss can be abrupt, the existence of a biodiversity threshold is still the cause of much controversy in the literature and would require that most species respond similarly to the loss of native vegetation. Here we test the existence of a biodiversity threshold, i.e. an abrupt decline in species richness, with habitat loss. We draw on a spatially-replicated dataset on Atlantic forest small mammals, consisting of 16 sampling sites divided between forests and matrix habitats in each of five 3600-ha landscapes (varying from 5% to 45% forest cover), and on an a priori classification of species into habitat requirement categories (forest specialists, habitat generalists and open-area specialists). Forest specialists declined abruptly below 30% of forest cover, and spillover to the matrix occurred only in more forested landscapes. Generalists responded positively to landscape heterogeneity, peaking at intermediary levels of forest cover. Open area specialists dominated the matrix and did not spillover to forests. As a result of these distinct responses, we observed a biodiversity threshold for the small mammal community below 30% forest cover, and a peak in species richness just above this threshold. Our results highlight that cross habitat spillover may be asymmetrical and contingent on landscape context, occurring mainly from forests to the matrix and only in more forested landscapes. Moreover, they indicate the potential for biodiversity thresholds in human-modified landscapes, and the importance of landscape heterogeneity to biodiversity. Since forest loss affected not only the conservation value of forest patches, but also the potential for biodiversity-mediated services in anthropogenic habitats, our work indicates the importance of proactive measures to avoid human-modified landscapes to cross this threshold.     

Spillover of Insects from Rain Forest into Adjacent Oil Palm Plantations

Conversion of natural forest to oil palm plantations is a major threat to biodiversity in Southeast Asia. The retention of natural forest habitats within plantations has been proposed as a method to reduce biodiversity losses in agricultural areas, and we examined whether forest areas resulted in spillover of species into adjacent oil palm plantations. We sampled ants and butterflies along two 2‐km transects across an ecotone from plantation into adjacent forest in Sabah, Malaysian Borneo. Species richness of both taxa was reduced in plantations, but to a greater extent in butterflies (54% reduction) than in ants (25% reduction). Butterfly diversity increased in plantations with increasing proximity to forest primarily due to spillover of ‘vagrant’ forest species (whose larval host plants do not occur in plantations), although richness of species that could potentially breed in plantations also increased near to forest. By contrast, ants showed no spillover effects and were less sensitive to land‐use changes, with much higher levels of similarity in species assemblages across habitats than for butterflies. Our results for butterflies suggest that despite the negative impacts of plantations on diversity, proximity to forest could improve diversity in adjacent plantations for some taxa. Spillover of forest species implies that retaining forest areas within plantations may be important for facilitating dispersal of some species through the landscape.     

Population structure of an endangered species living in contrasted habitats: Parnassia palustris (Saxifragaceae)

In endangered species, it is critical to analyse the level at which populations interact (i.e. dispersal) as well as the levels of inbreeding and local adaptation to set up conservation policies. These parameters were investigated in the endangered species Parnassia palustris living in contrasted habitats. We analysed population structure in 14 populations of northern France for isozymes, cpDNA markers and phenotypic traits related to fitness. Within population genetic diversity and inbreeding coefficients were not correlated to population size. Populations seem not to have undergone severe recent bottleneck. Conversely to pollen migration, seed migration seems limited at a regional scale, which could prevent colonization of new sites even if suitable habitats appear. Finally, the habitat type affects neither within-population genetic diversity nor genetic and phenotypic differentiation among populations. Thus, even if unnoticed local adaptation to habitats exists, it does not influence gene flow between populations.     

Densities of Bornean orang‐utans (Pongo pygmaeus morio) in heavily degraded forest and oil palm plantations in Sabah,Borneo

The conversion of forest to agriculture continues to contribute to the loss and fragmentation of remaining orang‐utan habitat. There are still few published estimates of orang‐utan densities in these heavily modified agricultural areas to inform range‐wide population assessments and conservation strategies. In addition, little is known about what landscape features promote orang‐utan habitat use. Using indirect nest count methods, we implemented surveys and estimated population densities of the Northeast Bornean orang‐utan (Pongo pygmaeus morio) across the continuous logged forest and forest remnants in a recently salvage‐logged area and oil palm plantations in Sabah, Malaysian Borneo. We then assessed the influence of landscape features and forest structural metrics obtained from LiDAR data on estimates of orang‐utan density. Recent salvage logging appeared to have a little short‐term effect on orang‐utan density (2.35 ind/km ²), which remained similar to recovering logged forest nearby (2.32 ind/km ²). Orang‐utans were also present in remnant forest patches in oil palm plantations, but at significantly lower numbers (0.82 ind/km ²) than nearby logged forest and salvage‐logged areas. Densities were strongly influenced by variation in canopy height but were not associated with other potential covariates. Our findings suggest that orang‐utans currently exist, at least in the short‐term, within human‐modified landscapes, providing that remnant forest patches remain. We urge greater recognition of the role that these degraded habitats can have in supporting orang‐utan populations, and that future range‐wide analyses and conservation strategies better incorporate data from human‐modified landscapes.     

Genetic evidence for dispersal by both sexes in the Central American Squirrel Monkey, Saimiri oerstedii citrinellus

Sex-biased dispersal (SBD) is common in many vertebrates, including primates. However, dispersal patterns in New World primates may vary among closely related taxa or populations in different local environments. Here, we test for SBD in an endangered New World primate, the Central American Squirrel Monkey (Saimiri oerstedii citrinellus). Previous studies of behavioral ecology suggest predominantly female dispersal in S.o. oerstedii in the Southern Pacific region of Costa Rica. However, our genetic data do not support strongly female-biased dispersal in S.o. citrinellus in the Central Pacific region. Our tests for SBD using microsatellite data including comparisons of isolation-by-distance, AI(c) , and F(ST) values between males and females were not significant. Also, we found greater population genetic structure in mitochondrial markers than in microsatellite markers, indicative of predominantly male dispersal. We conclude that both sexes disperse in S.o. citrinellus, and that males probably disperse over longer distances. We discuss how spatial and temporal variation among local populations should be taken into account when studying dispersal patterns and especially sex bias.     

Heterogeneity of tree diversity and carbon stocks in Amazonian oil palm landscapes

ABSTRACT

Background: Quantitative effects of large-scale oil palm expansion in the Neotropics on biodiversity and carbon stocks are still poorly documented.

Aims: We evaluated differences in tree species composition and richness, and above-ground carbon stocks among dominant land cover types in Pará state, Brazil.

Methods: We quantified tree species composition and richness and above-ground carbon stock in stands in remnant primary rain forest, young secondary forest, oil palm plantation and pastures.

Results: We sampled 5,696 trees with a DBH ≥ 2 cm, of 413 species in 68 families, of which 381 species were recorded in primary forest fragments. We found significant differences in species richness and carbon stock among the four land cover classes. Carbon stocks in remnant primary forest were typically over 190 Mg ha^?1, while those in other land cover types were typically less than 60 Mg ha^?1.

Conclusion: Oil palm plantations have a species-poor tree community given active management; old plantations have a standing carbon stock which is comparable to that of secondary forest and far greater than that of pastures. Private forest reserves within oil palm company holdings play an important role in preserving primary forest tree diversity in human-modified landscapes in Amazonia.     

Logged peat swamp forest supports greater macrofungal biodiversity than large‐scale oil palm plantations and smallholdings

Intensive land expansion of commercial oil palm agricultural lands results in reducing the size of peat swamp forests, particularly in Southeast Asia. The effect of this land conversion on macrofungal biodiversity is, however, understudied. We quantified macrofungal biodiversity by identifying mushroom sporocarps throughout four different habitats; logged peat swamp forest, large‐scale oil palm plantation, monoculture, and polyculture smallholdings. We recorded a total of 757 clusters of macrofungi belonging to 127 morphospecies and found that substrates for growing macrofungi were abundant in peat swamp forest; hence, morphospecies richness and macrofungal clusters were significantly greater in logged peat swamp forest than converted oil palm agriculture lands. Environmental factors that influence macrofungi in logged peat swamp forests such as air temperature, humidity, wind speed, soil pH, and soil moisture were different from those in oil palm plantations and smallholdings. We conclude that peat swamp forests are irreplaceable with respect to macrofungal biodiversity. They host much greater macrofungal biodiversity than any of the oil palm agricultural lands. It is imperative that further expansion of oil palm plantation into remaining peat swamp forests should be prohibited in palm oil producing countries. These results imply that macrofungal distribution reflects changes in microclimate between habitats and reduced macrofungal biodiversity may adversely affect decomposition in human‐modified landscapes.