Plant species diversity and composition of wetlands within an upland forest

Though often overlooked, small wetlands in an upland matrix can support diverse plant communities that increase both local and regional species richness. Here we characterize the full range of wetland vegetation within an upland forest landscape and compare the diversity and composition of different wetland plant communities. In an old-growth forest reserve in southern Quebec, Canada, we sampled wet habitats including lakeshores, permanent and seasonal ponds, swamps, glades, and streamsides. We used clustering, indicator species analysis, and nonmetric multidimensional scaling ordination to identify and compare vegetation types. The wetlands contained 280 species of vascular plants, 45% of the reserve's flora, in only 1.1% of its area. Local diversity averaged 24 ± 0.7 species per 7 m(2), much higher than in the surrounding upland forests. Plant communities sorted into five types, whose strongest indicator species were Osmunda regalis, Glyceria striata, O. cinnamomea, Deparia acrostichoides, and Matteuccia struthiopteris, respectively. Both local species richness and compositional variation among sites differed among the vegetation types. By combining species representative of the region's major wetlands with species from the upland forest matrix, the plant assemblages of these wetlands make disproportionately important contributions to landscape-level diversity.     

Causes and implications of intra-clonal variation in Gracilaria chilensis (Rhodophyta)

Strain selection studies in Gracilaria chilensis detected significant levels of intra-clonal variation. These findings motivated more detailed studies on the causes and implications of intra-clonal variation in these and other red algal species. Our results indicate that intra-clonal variation is common among replicated units (e.g.: carpospores and ramets) of several red algal species and suggest that a larger data base probably will show the occurrence of various kinds of intra-clonal changes, differing in frequency of occurrence and magnitude of phenotypic expression. It is likely also that different species would exhibit different amounts of variation. Four types of factors may cause intra-clonal variation: (1) physiological or developmental differences among ramets, (2) localized pathogen infections, (3) several kinds of genetic changes, and (4) sporeling coalescence. Intra-clonal variation among ramets: (1) increases the possibility of genet survival, (2) explains the origin of morphological and physiological differences among ramets of a given genet, (3) explains the large population variation found in many clonal species and (4) suggests that strain selection of some economically important seaweeds should be thought of as a fairly continuous process due to the instability of some of these clones.     

Phenotypic consequences of genetic variation in a gynogenetic complex of Phoxinus eos-neogaeus clonal fish (Pisces: Cyprinidae) inhabiting a heterogeneous environment

We examined the genetic composition, habitat use, and morphological variation of a Phoxinus eos-neogaeus unisexual hybrid complex and its sexually reproducing progenitor species inhabiting beaver-modified drainages of Voyageurs National Park, Minnesota. In addition to the single diploid P. eos-neogaeus gynogenetic clone, triploid and diploid-triploid mosaic biotypes were present at our study sites. Both P. eos and P. neogaeus, and all three hybrid biotypes were ubiquitous throughout one intensively surveyed drainage, but abundances and relative frequencies of the parental species and hybrids varied considerably within and among successional environments. Data from a large number of additional sites indicated that the proportion of polyploid hybrids within an environment was negatively related to hybrid relative frequency, implying that the genomic constitution of hybrids is an important determinant of clonal fitness among successional environments. Statistical comparisons of variation along size-free multivariate body shape axes indicated that despite its genetic uniformity, the P. eos-neogaeus clone is no less variable than its sexual progenitors, suggesting that a single genotype may actually respond to environmental variation with as much phenotypic variation as a genetically variable sexual population. The incorporation and expression of a third genome in triploid and diploid-triploid mosaic biotypes derived from the gynogenetic clone significantly expanded phenotypic variation of the clone. This additional variation results in greater similarities in habitat use and morphological overlap with the parental species, primarily P. eos, the predominant sperm donor for gynogenetic hybrid females in this complex. Polyploid augmentation of a diploid gynogenetic clone appears to be typical in the P. eos-neogaeus complex, and the additional genetic and phenotypic variation that it generates has potentially significant ecological and evolutionary consequences for the success and persistence of a single genotype in highly variable environments.     

Epigenetic variation within <Emphasis Type="Italic">Phragmites australis</Emphasis> among lineages,genotypes, and ramets

Epigenetics is likely an important factor in morphological and physiological acclimation, phenotypic plasticity, and potentially ecological dynamics such as invasiveness. We propose that Phragmites australis is an ideal model species for studies of epigenetics as a factor in plant invasions and ecology due to natural clonal replication (controlling for genetic variation) and the co-occurrence of subspecies with distinct life history strategies such as differences in invasiveness. In earlier work, genotypes and constituent clonal ramets were identified using microsatellite markers. In this pilot study, we screened the same ramets for epigenetic variation with Methylation-Sensitive AFLPs (MS-AFLPs), a modified type of AFLP dependent on differentially methylation-sensitive restriction enzymes. We found a significant difference in epigenetic signatures between introduced and native subspecies, and found that introduced P. australis demonstrated more epigenetic variation than their native counterparts. In both subspecies we observed moderate variation between genotypes relative to the higher degree of epigenetic variation found within genotypes (among ramets), suggesting that epigenotype may be more closely aligned with microhabitat than within-subspecies genotype. Finally, we observed potential epigenetic variation by site. This is the first study to investigate natural variation in DNA methylation patterns of P. australis and establishes the baseline in our understanding of the ecological relevance of epigenetics in this species.     

Patterns of genotypic variation and phenotypic plasticity of light response in two tropical Piper (Piperaceae) species

Patterns of phenotypic plasticity and genotypic variation in light response of growth and photosynthesis were examined in two species of rain forest shrub that differ in ecological distribution within the forest. We further examined correlations among photosynthetic and growth traits. We hypothesized that the pioneer species, Piper sancti-felicis, would display greater phenotypic plasticity than the shade-tolerant species, Piper arieianum. We further proposed that, in both species, genotypic effects would be more apparent in growth-related traits than photosynthetic traits due to more concentrated selection pressure on gas-exchange traits. P. sancti-felicis did not demonstrate greater phenotypic plasticity of light response. Although many of the traits measured had significant genotype effects, neither species showed any significant effects of genotype on light response of photosynthesis, suggesting little genetic variation for this trait within populations. A principal components analysis clearly illustrated both species and light effects, with the treatments dividing neatly along the axis of the first principal component and the species separating along the second principal component axis. Results indicated general similarities between the species in their trait correlation structure and level of integration among traits, but characteristic differences were observed in the patterns of change between low and high light. Both species had more correlations than expected within groups of growth-related or photosynthetic traits; strong correlations of traits between these two groups were underrepresented. The similar pattern of genetic variation and phenotypic integration observed in these two congeners may be due more to their close phylogenetic relation than to their ecological distributions.     

THE GENETIC BASIS OF THE ECOLOGICAL AMPLITUDE OF SPARTINA PATENS. II. VARIANCE AND CORRELATION ANALYSIS

Reciprocal transplantations of Spartina patens genotypes from adjacent salt marsh, swale, and dune habitats provided evidence for genetic differentiation among subpopulations, due at least in part to contrasting selection regimes. Genet survival in the different habitats was related to the amount of genetic divergence. In the dune habitat, marsh ramets showed the lowest survival, swale ramets showed intermediate survival, and dune ramets showed the highest survival. This relationship was not reciprocal, however. The marsh habitat afforded an environment where survival was maximal for all genotypes. Thus, by comparison, the dune environment appeared to impose a more intense selection pressure, and the swale an intermediate selection pressure on Spartina patens. In each site resident genotypes tended to show greater relative fitness than aliens. This evidence for genetic divergence corroborates that previously reported on morphometric (Silander and Antonovics, 1979) and allozymic traits (Silander, 1984). High levels of phenotypic plasticity may permit greater adaptation to the spatially and temporally heterogeneous environment occupied by S. patens than would genetic variation alone. Dune and swale genets were more phenotypically plastic across traits examined than were marsh genotypes. The higher plasticity in these peripheral subpopulations may confer increased fitness among residents and compensate for observed declines in genetic variation. A slight decrease in genetic variability was evident from marsh to dune subpopulations. However, since the differences in genetic variation among subpopulations were small, and disparities did occur, it is unlikely that evolutionary divergence is retarded primarily by a lack of genetic variability in the characters considered. Evidence is presented to indicate that evolutionary divergence among subpopulations may be retarded by negative or unfavorable correlations among characters being selected simultaneously. These negative correlations may increase extinction probabilities in small peripheral populations, such as those represented by the dune or swale, and are likely to lower fitness. Based on these observations, I hypothesize that further microevolution may be retarded in peripheral dune and swale subpopulations, primarily by unfavorable genetic correlation structures among fitness components or characters under simultaneous selection. Contributing factors may include lowered genetic variance and higher levels of phenotypic plasticity.     

Climate envelope modelling reveals intraspecific relationships among flowering phenology, niche breadth and potential range size in Arabidopsis thaliana

Species often harbour large amounts of phenotypic variation in ecologically important traits, and some of this variation is genetically based. Understanding how this genetic variation is spatially structured can help to understand species' ecological tolerances and range limits. We modelled the climate envelopes of Arabidopsis thaliana genotypes, ranging from early- to late-flowering, as a function of several climatic variables. We found that genotypes with contrasting alleles at individual flowering time loci differed significantly in potential range size and niche breadth. We also found that later flowering genotypes had more restricted range potentials and narrower niche breadths than earlier flowering genotypes, indicating that local selection on flowering can constrain or enhance the ability of populations to colonise other areas. Our study demonstrates how climate envelope models that incorporate ecologically important genetic variation can provide insights into the macroecology of a species, which is important to understand its responses to changing environments.     

渐危植物浙江楠群落结构及叶片性状多样性

浙江楠为商品材“金丝楠木”的原植物之一,天然分布区窄,属国家二级保护渐危种,在全球气候变化背景下,研究其天然种群所在森林群落的结构特征及其多样性具有重要意义.本研究以浙江楠天然分布区内13个典型种群为对象,研究其所在群落的群落结构特征、物种多样性和叶片表型变异特征.结果表明: 浙江楠天然种群所在群落的结构复杂,物种多样性较高,13个群落的16块样地内共有维管束植物87科162属235种,其中种子植物79科151属221种;重度干扰导致浙江开化、浙江临安等群落的乔木层物种多样性指数显著低于其他群落,而中度干扰提高了福建建宁群落灌木层物种多样性,轻度干扰则利于浙江楠种群自然更新.叶片表型作为楠木属植物重要的分类依据,叶片表型性状在种群间、种群内均存在丰富变异,平均变异系数为17.2%,变异幅度为10.4%～27.5%.种群间的变异(53.6%)大于种群内的变异(17.0%),平均表型分化系数为75.1%,种群间变异是浙江楠叶片表型变异的主要来源.基于欧式距离(10 cm)将13个天然种群划分为两大类群,但变异呈随机性.     

Ribosomal DNA sequence variation among sympatric strains of the Cyclotella meneghiniana complex (Bacillariophyceae) reveals cryptic diversity

Cyclotella meneghiniana Kützing is one of the most commonly found and intensively studied freshwater diatom species. However, it is considered taxonomically problematic because of its unusually wide ecological range and large frustule ultrastructural variation. As part of a study of morphological and genetic variation in this morphospecies, we surveyed nucleotide variation in the hypervariable D1/D2 regions of the 28S rDNA, in the ribosomal internal transcribed spacer region (containing ITS1, the 5.8S rDNA and ITS2) and in the 18S rDNA in a collection of 20 sympatric strains. High genetic variability and strong indications of genetic structure among the Cyclotella meneghiniana strains were found. Representatives of four genetically distinct--apparently reproductively isolated--groups were revealed among them. The random distribution of ITS variation within these four groups indicated that the genetic structure in Cyclotella meneghiniana can probably be explained by the presence of cryptic sexual species rather than by the lack of allogamous sexual reproduction. The morphological features traditionally used for species identification in this group cannot distinguish these putative cryptic species.     

THE EVOLUTION OF ENVIRONMENTAL TOLERANCE AND RANGE SIZE: A COMPARISON OF GEOGRAPHICALLY RESTRICTED AND WIDESPREAD MIMULUS

The geographic ranges of closely related species can vary dramatically, yet we do not fully grasp the mechanisms underlying such variation. The niche breadth hypothesis posits that species that have evolved broad environmental tolerances can achieve larger geographic ranges than species with narrow environmental tolerances. In turn, plasticity and genetic variation in ecologically important traits and adaptation to environmentally variable areas can facilitate the evolution of broad environmental tolerance. We used five pairs of western North American monkeyflowers to experimentally test these ideas by quantifying performance across eight temperature regimes. In four species pairs, species with broader thermal tolerances had larger geographic ranges, supporting the niche breadth hypothesis. As predicted, species with broader thermal tolerances also had more within‐population genetic variation in thermal reaction norms and experienced greater thermal variation across their geographic ranges than species with narrow thermal tolerances. Species with narrow thermal tolerance may be particularly vulnerable to changing climatic conditions due to lack of plasticity and insufficient genetic variation to respond to novel selection pressures. Conversely, species experiencing high variation in temperature across their ranges may be buffered against extinction due to climatic changes because they have evolved tolerance to a broad range of temperatures.     

Diplazium subsinuatum and Di. tomitaroanum should be Moved to Deparia According to Molecular, Morphological, and Cytological Characters

rbcL sequence data revealed that the putative intergeneric hybrid, Diplazium tomitaroanum Masam. belongs in Deparia, as also does Diplazium subsinuatum (Wall, ex Hook, et Grev.) Tagawa, one of the putative parents. An examination of rachis, scale and spore morphology, and chromosome data provide support for this placement. We propose a new taxonomic treatment of the two Diplazium species as Deparia. Received 7 December 1999/ Accepted in revised form 15 February 2000     

Do different rates of gene flow underlie variation in phenotypic and phenological clines in a montane grasshopper community?

Species responses to environmental change are likely to depend on existing genetic and phenotypic variation, as well as evolutionary potential. A key challenge is to determine whether gene flow might facilitate or impede genomic divergence among populations responding to environmental change, and if emergent phenotypic variation is dependent on gene flow rates. A general expectation is that patterns of genetic differentiation in a set of codistributed species reflect differences in dispersal ability. In less dispersive species, we predict greater genetic divergence and reduced gene flow. This could lead to covariation in life‐history traits due to local adaptation, although plasticity or drift could mirror these patterns. We compare genome‐wide patterns of genetic structure in four phenotypically variable grasshopper species along a steep elevation gradient near Boulder, Colorado, and test the hypothesis that genomic differentiation is greater in short‐winged grasshopper species, and statistically associated with variation in growth, reproductive, and physiological traits along this gradient. In addition, we estimate rates of gene flow under competing demographic models, as well as potential gene flow through surveys of phenological overlap among populations within a species. All species exhibit genetic structure along the elevation gradient and limited gene flow. The most pronounced genetic divergence appears in short‐winged (less dispersive) species, which also exhibit less phenological overlap among populations. A high‐elevation population of the most widespread species, Melanoplus sanguinipes, appears to be a sink population derived from low elevation populations. While dispersal ability has a clear connection to the genetic structure in different species, genetic distance does not predict growth, reproductive, or physiological trait variation in any species, requiring further investigation to clearly link phenotypic divergence to local adaptation.     

What drives phenotypic divergence among coral clonemates of Acropora palmata?

Evolutionary rescue of populations depends on their ability to produce phenotypic variation that is heritable and adaptive. DNA mutations are the best understood mechanisms to create phenotypic variation, but other, less well‐studied mechanisms exist. Marine benthic foundation species provide opportunities to study these mechanisms because many are dominated by isogenic stands produced through asexual reproduction. For example, Caribbean acroporid corals are long lived and reproduce asexually via breakage of branches. Fragmentation is often the dominant mode of local population maintenance. Thus, large genets with many ramets (colonies) are common. Here, we observed phenotypic variation in stress responses within genets following the coral bleaching events in 2014 and 2015 caused by high water temperatures. This was not due to genetic variation in their symbiotic dinoflagellates (Symbiodinium “fitti”) because each genet of this coral species typically harbours a single strain of S. “fitti”. Characterization of the microbiome via 16S tag sequencing correlated the abundance of only two microbiome members (Tepidiphilus, Endozoicomonas) with a bleaching response. Epigenetic changes were significantly correlated with the host's genetic background, the location of the sampled polyps within the colonies (e.g., branch vs. base of colony), and differences in the colonies’ condition during the bleaching event. We conclude that long‐term microenvironmental differences led to changes in the way the ramets methylated their genomes, contributing to the differential bleaching response. However, most of the variation in differential bleaching response among clonemates of Acropora palmata remains unexplained. This research provides novel data and hypotheses to help understand intragenet variability in stress phenotypes of sessile marine species.     

云南引种印楝实生种群的表型变异

为了揭示印楝(Azadirachta indica)实生种群表型变异程度和变异规律, 以云南引种印楝人工林为研究对象, 基于9个种群90个单株14个表型性状严格细致的测量, 采用单因素方差分析、巢式方差分析、相关分析、协方差主成分分析(S法)和非加权配对算术平均法(UPGMA)聚类分析等数理方法, 分析了种群的表型变异。结果表明: 印楝种内表型性状在种群间和种群内均存在着较丰富的差异, 种群内的变异大于种群间的变异, 种群间的分化相对较小。对表型性状进行的变异系数多重比较和协方差主成分分析(S法)均显示, 结实和种子化学成分相关性状的变异是造成印楝表型变异的主要来源。利用种群间欧氏距离进行的UPGMA聚类分析结果进一步表明, 印楝9个种群可以分为4类, 表型性状并没有严格依地理距离而聚类。研究结果为印楝的遗传改良工作奠定了基础, 为制定育种策略和人工经营对策提供了科学依据。     

Invasion of diverse habitats by few Japanese knotweed genotypes is correlated with epigenetic differentiation

The expansion of invasive species challenges our understanding of the process of adaptation. Given that the invasion process often entails population bottlenecks, it is surprising that many invasives appear to thrive even with low levels of sequence-based genetic variation. Using Amplified Fragment Length Polymorphism (AFLP) and methylation sensitive-AFLP (MS-AFLP) markers, we tested the hypothesis that differentiation of invasive Japanese knotweed in response to new habitats is more correlated with epigenetic variation than DNA sequence variation. We found that the relatively little genetic variation present was differentiated among species, with less differentiation among sites within species. In contrast, we found a great deal of epigenetic differentiation among sites within each species and evidence that some epigenetic loci may respond to local microhabitat conditions. Our findings indicate that epigenetic effects could contribute to phenotypic variation in genetically depauperate invasive populations. Deciphering whether differences in methylation patterns are the cause or effect of habitat differentiation will require manipulative studies.     

Growth strategy of the stoloniferous rattan Calamus javensis in Mt. Halimun, Java

Calamus javensis is a widespread understorey rattan in Southeast Asia and is one of the dominant rattan species in Mt. Halimun National Park, West Java. This species can establish clumps either sexually with seeds or clonality with stolons. To analyze the role of sexual reproduction and clonality for clump establishment in C. javensis, we studied the vegetative and genetic structures of the population. Totals of 2,777 ramets comprising 1,321 clumps were found in three 0.16 ha plots. The number of ramets per clump showed reverse J-shaped distribution with a maximum of 15. Clustering and stoloniferous ramets accounted for 62 and 20% of all ramets, respectively. This indicates that C. javensis is actively engaged in clustering clonal growth. The longest stem was 14 m although 75% of all stems were shorter than 1 m long. The stolon ranged from 6 to 538 cm in length, which decreased the local density of ramets. Using randomly amplified polymorphic DNA (RAPD) analysis, we obtained 56 polymorphic bands for 118 clumps sampled from one of the plots. All samples showed different RAPD banding patterns, except one pair at a distance of 225 cm from each other. The genetic similarity among samples closer than 10 m was significantly higher than the expected value from a purely random distribution. These results suggest that most separate clumps are established by recruitment from seeds, and most seeds dispersed near mother plants. Hence, in C. javensis, clonality is more a growth strategy to increase the size of the genet than a dispersion-propagation strategy to expand the habitat.     

Scale‐dependent thermal tolerance variation in Australian mountain grasshoppers

Physiological variation among and within species is thought to play a key role in determining distribution patterns across environmental gradients. We tested inter‐ and intraspecific variation in cold and heat tolerances for three grasshopper species (genus Kosciuscola) with overlapping elevation distributions, across their respective ranges in the Australian mountains. Of the three cold tolerance traits measured, the critical thermal minimum was the only trait to vary among species, with greater cold tolerance associated with a distribution extending to a higher elevation. Cold tolerance limits were regularly exceeded in exposed microhabitats, suggesting a role for cold adaptation in structuring species distribution patterns. In contrast to cold tolerance, heat tolerance variation was primarily partitioned within species. For two species, populations from treeless alpine habitat were more heat tolerant than their lower‐elevation counterparts, supporting recent models that suggest greater exposure to temperature extremes at higher elevations. These contrasting patterns of physiological variation among and within species emphasise the importance of considering variation within species when attempting to understand how species distributions are affected by thermal extremes.     

浙江楠种群表型变异

以探讨浙江楠(Phoebe chekiangensis)种群间和种群内的表型变异程度和变异规律为目的, 对其分布区9个种群的10个表型性状进行了研究。采用巢式方差分析、变异系数、多重比较和相关分析等多种分析方法, 对种群间和种群内的表型多样性及其与地理生态因子的相关性进行了讨论。研究结果表明: 浙江楠叶片、种子等表型性状在种群间和种群内均存在着丰富的变异, 10个性状在种群间、种群内的差异均达极显著水平; 种群内的变异(21.74%)大于种群间的变异(18.45%), 表型性状的平均分化系数为41.43%, 种群内变异是浙江楠表型变异的主要变异来源。各性状平均变异系数为12.78%, 变化幅度为6.50%-19.38%。种群间叶片的平均变异系数(16.99%)高于种群间种子的平均变异系数(8.58%), 表明种子的稳定性高于叶片。叶宽、叶面积与叶片其他性状间多呈显著或极显著相关, 种子千粒重与种子宽、种子体积显著正相关; 而种子和叶片的各性状间多无显著相关性。种子宽、种子体积和种子千粒重随着海拔的增加出现减小的趋势, 种子体积受纬度控制, 随着纬度的增大表现出增大的趋势。     

Ecological and genetic effects of cutting in an Alnus trabeculosa Hand.-Mazz. (Betulaceae) population

In order to assess the ecological and genetic effects of cutting, we compared two portions of Alnus trabeculosa population at Yuda (Iwate Prefecture, Japan): one that has been cut about 30 years ago and one that has remained uncut. These portions were compared in terms of the degree of sprouting, genetic variation and gene distribution using isozyme markers. First, we determined the multilocus genotype (MLG) of all ramets, then sorted them into individuals according to the distribution of the MLGs. The average (+/- SE) of largest distance between ramets in one individual was 2.1 (+/- 0.18) m, which is consistent with the distance (2.0 (+/- 0.20) m) obtained by tracing physical connections between ramets. We found no significant differences in genetic variation between the two portions, but there were significant differences in their degree of sprouting. Furthermore, there were striking differences in gene distribution: the cut portion showed greater clustering of individuals with identical genetic components, which may be due to regeneration in the gaps made by cutting, reflecting the location of the mother trees, and seed and pollen dispersal from them.     

Plasticity of functional traits varies clinally along a rainfall gradient in Eucalyptus tricarpa

Widespread species often occur across a range of climatic conditions, through a combination of local genetic adaptations and phenotypic plasticity. Species with greater phenotypic plasticity are likely to be better positioned to cope with rapid anthropogenic climate changes, while those displaying strong local adaptations might benefit from translocations to assist the movement of adaptive genes as the climate changes. Eucalyptus tricarpa occurs across a climatic gradient in south‐eastern Australia, a region of increasing aridity, and we hypothesized that this species would display local adaptation to climate. We measured morphological and physiological traits reflecting climate responses in nine provenances from sites of 460 to 1040 mm annual rainfall, in their natural habitat and in common gardens near each end of the gradient. Local adaptation was evident in functional traits and differential growth rates in the common gardens. Some traits displayed complex combinations of plasticity and genetic divergence among provenances, including clinal variation in plasticity itself. Provenances from drier locations were more plastic in leaf thickness, whereas leaf size was more plastic in provenances from higher rainfall locations. Leaf density and stomatal physiology (as indicated by δ¹³C and δ¹⁸O) were highly and uniformly plastic. In addition to variation in mean trait values, genetic variation in trait plasticity may play a role in climate adaptation.