Fatty acids diffusion in lecithin multilayers: hydration and PH effects.

The diffusion of the sodium salt of monocarboxylic fatty acids, from formate to stearate, has been studied as a function of water content and pH in lecithin--water lamellar phases. Evolution of the diffusion coefficients with increasing chain length reflects the different localizations of fatty acids in the system. From formate to butyrate, which are mainly restricted to the hydrophilic layer of the phase, diffusion rates decrease rapidly. From butyrate to stearate, fatty acids (anchored at the hydrophilic--lipophilic interface) undergo lateral diffusion and then the decrease of D with increasing chain length is much slower. The diffusion of stereate is already comparable to the diffusion of the lecithin molecule itself. The diffusion rates strongly depend upon phase hydration and pH: it is shown that both parameters control the fatty acid ionization. The variations in diffusion rates observed may be ascribed to the fact that, depending upon their state of ionization, fatty acids assume a different localization and therefore experience different interactions in the lamellar system.     

Comparison of the human,canine and swine E apoproteins

A comparative study of the E apoprotein isolated from the d<1.02 lipoproteins of human, canine and swine plasma revealed that the various apo-E preparations had similar molecular weights (37,000–39,000) and had similar amino acid compositions in that glutamic acid, alanine, leucine and arginine were present in high concentrations. The various preparations showed partial immunochemical cross-reactivity, demonstrating significant sequence homology between the species. However, determination of the amino-terminal amino acid sequence by automated Edman degradation showed each apo-E was different, demonstrating that the amino-terminal portion of the E apoprotein was a variable region of this protein.     

Regulation of exocellular protease in Neurospora crassa: induction and repression under conditions of nitrogen starvation.

Exponential-phase cells of Neurospora crassa require the continued presence of a protein inducer and nitrogen starvation to induce exocellular protease under conditions where protein is the sole nitrogen source. The nature of the protein inducer appears relatively unimportant, since both soluble proteins (e.g., myoglobin) and insoluble proteins (e.g., corn zein) will effect induction. Nonstarved cells of N. crassa appear to have small nitrogen pools, since nitrogen starvation of exponential cells prior to transfer into a medium where protein is the sole nitrogen source effects starvation-time-dependent decreases in protease biosynthesis. Ammonium ion represses protease synthesis, with apparent specificity at low concentrations. The amino acids arginine, tryptophan, and threonine effect repression of protease biosynthesis under conditions of nitrogen starvation. Under conditions of sulfur starvation, the amino acids cysteine, methionine, and cystine repress protease biosynthesis. In carbon-starved cells, all of the above amino acids, plus histidine, isoleucine, leucine, lysine, phenylalanine, and valine, effect repression. Examination of amino acid pools formed when cells are grown on protein as the sole nitrogen source demonstrated that the amino acids which repress protease biosynthesis under conditions where protein is the sole carbon source accumulate in significant amounts during the course of protease induction, with kinetics consonant with the induction process.     

The mechanism of regulation of fibroblastic cell replication. III. A central role for nutrient limitation: a conditioning effect due to serum imprinting of the cell response

Haploid Saccharomyces cerevisiae cells of mating type a, but not α, produce and secrete a diffusible substance, designated a factor. The a factor transiently arrests cells of mating type α, but not a, at a very early stage of the cell cycle, prior to budding and to the initiation of DNA synthesis. While the cells are arrested at this stage, few, if any, of the functions required for the ensuing cell cycle are carried out. This stage of the cell cycle coincides with the stage at which α factor, produced by cells of mating type a, specifically arrests cells of mating type a [2]. It seems probable that the reciprocally acting a and α factors together provide the mechanism by which haploid cells are synchronized to the appropriate stage of the cell cycle as a prelude to conjugation.     

On the computation of the tertiary structure of globular proteins. III. Inter-residue distances and computed structures

An analysis of geometrical models for computing the tertiary structure of globular proteins from the primary structure is presented. The roles of initial configuration, input information on inter-residue distances and the errors in this information are delineated. It is shown that for local information like that on secondary structure, the calculated structure is very sensitive to errors and to the initial configuration. Thus, such information is far from adequate for predicting the tertiary structure. On the other hand, global information on all the inter-residue distances is quite insensitive to errors. A semi-empirical method is presented to estimate these distances and the calculated structures are given for two proteins—pancreatic trypsin inhibitor and parvalbumin. These structures have good resemblances to those determined by X-ray diffraction. A strategy for further refinement of the method is indicated.     

On the computation of the tertiary structure of globular proteins II.

The semi-empirical approach proposed earlier (Y?as et al., 1978) to compute the tertiary structures of globular proteins is here amplified and developed further. Using, as input, information on sequence and certain averages of interatomic distances which can be semi-empirically estimated, structures have been computed for pancreatic trypsin inhibitor, lysozyme and staphylococcal nuclease which resemble those determined by X-ray diffraction methods. The approach used is compared and contrasted with others proposed recently.     

Liquid scintillation counting of 14C- and 3H-labeled samples on solid supports: a general solution of the problem

The data presented demonstrate the potential of surfactant-fortified scintillation cocktails in overcoming many of the problems encountered in the quantitation of radioactivity on solid supports. Using a broad range of representative ionic and polar biochemical compounds, the in vial elution and quantitative recovery of ³H and ¹⁴C-labeled components from a wide assortment of common solid support media has been demonstrated. This methodology in combination with zero elution counting systems and in some circumstances gelled suspension counting should combine to overcome most of the problems associated with determination of isotopic activity on such solid support media.     

The error catastrophe hypothesis with reference to aging and the evolution of the protein synthesizing machinery.

Recent investigations of the thermodynamics of protein denaturation, in particular of pressure effects, have questioned the fundamental importance, hitherto assumed, of hydrophobic interactions in the native conformations of proteins. The volume changes observed on protein denaturation are incompatible with the volume changes estimated on the basis of volume effects observed in low molecular weight model systems of the aliphatic groups. In the present paper the model systems generally considered are critically discussed. It is concluded, that solutions of low molecular weight alkanes may not be any adequate models of aliphatic groups in proteins. Studies of more appropriate model systems suggest that the volume changes to be expected, when buried aliphatic groups of proteins are exposed to water, are small and positive, and mainly due to structural changes of the water. These volume changes are in accordance with the volume changes actually measured of protein denaturation, and the latter volume effects are taken as supporting evidence of the importance of hydrophobic interactions in protein confonriations.     

Two components of cysteine oxidase in rat liver

Purified cysteine oxidase in rat liver is composed of two distinct proteins. These proteins are able to be fractionated by DEAE-cellulose column chromatography. It appears that one of them is a catalytic protein named protein-B having tightly bound iron as a prosthetic group, while the other is either a modifier or activating protein named protein-A. Protein-B is found to exist in both an active and an inactive form. Inactive protein-B is activated by incubation with substrate cysteine under anaerobic condition. Activated protein-B alone exhibited an extremely low catalytic activity but in the presence of protein-A remarkable increase in activity was observed.     

Interaction of [RuCl2(PR3)3] (R = Ph, p-tolyl) with some Rh(III), Ir(III) and Pt(IV) tertiary phosphine complexes

Reactions of RuCl₂(PR₃)₃ [PR₃ = PPh₃ or P(p-tolyl)₃ with several monomeric phosphine complexes of rhodium(III), iridium(III) and platinum(IV) have been studied. The reactions with mer-MCl₃(P′R₃)₃ (M = Rh, P′R₃ = PEt₂Ph, PMe₂Ph, PMe₂Ph; M = Ir, P′R₃ = PBuPh₂, PMePh₂, PEt₂Ph) involves a phosphine ligand transfer between metal atoms to afford novel dark coloured heterobimetallic complexes containing a triple chloro-bridge. The reactions of RuCl₂(PR₃)₃ with PtCl₄(P′R₃)₂ (P′R₃ = PEt₂Ph, PBu₂Ph), however, do not give evidence for the formation of dinuclear complexes containing the (RuCl₃Pt) unit, but a reduction of Pt^IV to Pt^II occurs with transfer of phosphine ligands between the two metals. The formulation of these complexes has been established by ³¹P NMR spectroscopy.     

Differences between cattle and sheep in their digestion and relative intake of a mature tropical grass hay

The dry-matter digestibility (DMD) of a low quality tropical grass hay was much higher in cattle (49.6%) than in sheep (34.6%). This difference was not due to a difference in relative intake per kg liveweight (W^0.9) nor to a difference in the diet selected. However, neutral-detergent fibre (NDF) was digested better by cattle than by sheep. For each kg of dry matter consumed, cattle digested 415 g NDF and sheep 279 g NDF. This was because 60% more of the hemicellulose and 35% more of the cellulose were digested by cattle than by sheep.Differences between cattle and sheep in the concentrations of urea and sulphate in blood, and the relatively lower excretion of N, P and Ca by the cattle suggested that the rumen micro-organisms of the cattle were utilizing these nutrients better than those of the sheep. This could have increased microbial activity in the rumen and, hence, digestion of fibre.     

Effect of quinolinate on aminotransferases

Quinolinate inhibits several aminotransferases (ornithine, alanine, and aspartate). However, it is considerably more potent as an inhibitor of liver and heart cytoplasmic aspartate aminotransferase. It is a much less potent inhibitor of mitochondrial aspartate aminotransferases. Quinolinate is bound to the active site of cytoplasmic aspartate aminotransferase. It has a much greater affinity for the pyridoximine-P than the pyridoxal-P form of the enzyme. According to kinetic results, the inhibition or dissociation constant of quinolinate is 0.2 and 20 mm, respectively, for the pyridoxamine-P and the pyridoxal-P forms of the enzyme. Since quinolinate is mainly bound to the pyridoxamine-P form: (a) it is a potent competitive inhibitor of α-ketoglutarate but has little effect when α-ketoglutarate is saturating even if the level of aspartate is low; (b) it decreases the effect of α-ketoglutarate on the absorption spectrum of the pyridoxamine-P form; and (c) it enhances the effect of glutamate on the absorption spectrum of the pyridoxal-P form. Quinolinate is also apparently bound to the apoenzyme since it inhibits reconstitution by either pyridoxamine-P or pyridoxal-P. Since quinolinate is a competitive inhibitor of α-ketoglutarate, it is possible that part of the inhibitory effect of quinolinate on hepatic gluconeogenesis could result from quinolinate inhibiting the conversion of aspartate to oxalacetate by the cytoplasmic aspartate aminotransferase. Quinolinate has no effect on either rat or bovine liver glutamate dehydrogenase or on kidney glutamate dehydrogenase.     

The information content of DNA and evolution

The information content of DNA molecules has been calculated for various organisms using experimentally measured codon frequencies as well as those estimated theoretically. A direct relationship between the information content and the evolutionary rank of the organism is observed. The biological and physical significance of information content in the context of evolution is discussed.     

On the computation of the tertiary structure of globular proteins

A method is presented to compute the approximate locations of α carbon atoms of proteins using experimentally obtainable information. This information consists of distances between nearest neighbor α carbon atoms, locations of SS bonds, primary sequence of amino acids as reflected by hydrophobic and hydrophylic residues and the assumption of globularity. The method permits the reconstruction of structure similar to the real ones, and is readily extendable to compute structures more accurately by incorporating additional information.     

Cyanate from alkaline hydrolysis of cyanogen bromide-activated polysaccharides

Alkaline treatment (pH 12) of cyanogen bromide-activated Sepharose and Sephadex, both with or without coupled protein, released a thiol protease inactivator. It was successfully isolated by the combination of Sephadex G-10 gel filtration and Dowex 1-X2 ion-exchange chromatography. Infrared and chemical analysis show it to be the cyanate ion. Barbituric-pyridine colorimetric analysis, capacity test, and other evidence suggest that the carbamate group in the activated polysaccharides is the most likely precursor of the cyanate.     

Glutamine synthetase from Salmonella typhimurium: manganese(II), substrate, and inhibitor interaction with the unadenylylated enzyme.

Unadenylylated glutamine synthetase (EC 6.3.1.2) was isolated and purified to homogeneity from Salmonella typhimurium. The enzyme molecule is a symmetrical aggregate of 12 subunits arranged in two hexagonal layers, as is evident from electron micrographs. The subunit molecular weight of the enzyme was found to be approximately 50,000 by polyacrylamide gel electrophoresis in sodium dodecyl sulfate when compared to Escherichia coli glutamine synthetase and other protein standards. A long tube of glutamine synthetase was formed as a single-stranded coil resulting from incubation of the enzyme in a low ionic strength buffer. A study of Mn(II) binding to the unadenylylated enzyme at 25 °C was conducted as a function of pH. At pH 7.1 two classes of metal ion sites per subunit were found with K_D values of 3.7 × 10^?6 and 1.7 × 10^?4m, while at pH 6.8 these values were 1.1 × 10^?5 and 1.0 × 10^?4m, respectively. Only one set of binding sites was observed at pH 6.2 with a K_D value of 1.0 × 10^?4m. The metal ion binding sites were further investigated by monitoring proton relaxation rates (prr) and the epr spectrum of enzyme-bound Mn(II). The longitudinal prr of water protons at pH 7.1 indicate that protons interacting with enzyme-Mn(II) at the “tight” site (K_D = 3.7 × 10^?6) are de-enhanced (?_b1 = 0.42) and result from water protons beyond the inner coordination sphere. The second Mn(II) site has a value of ?_b2 = 35 for the binary enhancement, suggesting that this site probably has two to three rapidly exchanging water molecules in its coordination sphere. The epr spectrum of enzyme-bound Mn(II) at the “tight” site is isotropic and is dramatically sharpened by adding the substrate analog methionine sulfoximine. Subsequent addition of ATP or the ATP analog, AMP-PCP (adenylyl methylene diphosphate) produced anisotropic spectra that were similar, suggesting that both ATP and AMP-PCP bind similarly on the enzyme surface. However, a marked change in the Mn(II) environment from anisotropic to near cubic results from the addition of ADP to the quaternary enzyme-Mn(II)-sulfoximine- (AMP-PCP) complex, indicating that ADP displaces AMP-PCP. No change in the anisotropic spectrum due to the enzyme-Mn(II)-sulfoximine-ATP complex is seen by the addition of ADP. This experimental result supports the experimental findings of Ronzio and Meister [Proc. Nat. Acad. Sci. USA59, 164 (1968)], who established that ATP phosphorylates methionine sulfoximine, thereby producing an inactive enzyme. The allosteric effectors, AMP and Trp, have little effect on the epr spectrum of the complex formed from Mn(II), enzyme, sulfoximine, and ADP, suggesting the absence of direct coordination of AMP or Trp to the bound Mn(II). The prr and epr results reported herein with glutamine synthetase from S. typhimurium when compared to those seen for the enzyme from E. coli [Villafranca et al., Biochemistry15, 544 (1976)] demonstrate some similarities but also many substantial differences between the enzymes from these two bacterial sources.