Species diversity in deep-sea communities

Recent extensive quantitative sampling of the deep-sea bottom has revealed communities much richer in species than previously thought. In situ experiments and more precise sampling using free-vehicle instruments and submersibles have provided a more accurate assessment of spatial and temporal variation on the sea floor. These studies have demonstrated the importance of small patches (millimeters to meters) of biogenic disturbance and food input separated on spatial scales of meters to kilometers. In this respect, the processes maintaining deep-sea diversity are similar to those in other species-rich environments such as rain forests.     

Species diversity, invasion, and alternative community states in sequentially assembled communities

The relationship between resident species diversity and invasion is generally negative in experimental studies but takes various forms in observational studies of natural communities. We hypothesized that stochastic species colonization, which applies to natural communities but not to experimental communities generally assembled through simultaneous species introduction, may lead to nonnegative diversity-invasion relationships via incurring priority effects. To test this hypothesis, we manipulated both resident species diversity and colonization history in sequentially assembled communities of bacterivorous protist species. We found that, despite a significant effect of assembly history on invader abundance, invader abundance decreased with diversity. This result was largely driven by positive selection effects associated with the dominant influence of an invasion-resistant species, which shared the most similar resource use pattern with the invader, and by the overall weak priority effects observed for the resident communities. Increasing species diversity, however, significantly strengthened priority effects, providing the first experimental support for the idea that larger species pools promote alternative community states. We suggest that elucidating mechanisms regulating the strength of priority effects may help in understanding variation in diversity-invasion relationships among natural communities.     

Species diversity in local neutral communities

We extend the neutral theory of macroecology by deriving biodiversity models (relative species abundance and species-area relationships) in a local community-metacommunity system in which the local community is embedded within the metacommunity. We first demonstrate that the local species diversity patterns converge to that of the metacommunity as the size (scale) of the embedded local community increases. This result shows that in continuous landscapes no sharp boundaries dividing the communities at the two scales exist; they are an artificial distinction made by the current spatially implicit neutral theory. Second, we remove the artificial restriction that speciation cannot occur in a local community, even if the effects of local speciation are small. Third, we introduce stochasticity into the immigration rate, previously treated as constant, and demonstrate that local species diversity is a function not only of the mean but also of the variance in immigration rate. High variance in immigration rates reduces species diversity in local communities. Finally, we show that a simple relationship exists between the fundamental diversity parameter of neutral theory and Simpson's index for local communities. Derivation of this relationship extends recent work on diversity indices and provides a means of evaluating the effect of immigration on estimates of the fundamental diversity parameter derived from relative species abundance data on local communities.     

Effects of small-scale disturbance on invasion success in marine communities

Introductions of non-indigenous species have resulted in many ecological problems including the reduction of biodiversity, decline of commercially important species and alteration of ecosystems. The link between disturbance and invasion potential has rarely been studied in the marine environment where dominance hierarchies, dynamics of larval supply, and resource acquisition may differ greatly from terrestrial systems. In this study, hard substrate marine communities in Long Island Sound, USA were used to assess the effect of disturbance on resident species and recent invaders, ascidian growth form (i.e. colonial and solitary growth form), and the dominant species-specific responses within the community. Community age was an additional factor considered through manipulation of 5-wk old assemblages and 1-yr old assemblages. Disturbance treatments, exposing primary substrate, were characterized by frequency (single, biweekly, monthly) and magnitude (20%, 48%, 80%) of disturbance. In communities of different ages, disturbance frequency had a significant positive effect on space occupation of recent invaders and a significant negative effect on resident species. In the 5-wk community, magnitude of disturbance also had a significant effect. Disturbance also had a significant effect on ascidian growth form; colonial species occupied more primary space than controls in response to increased disturbance frequency and magnitude. In contrast, solitary species occupied significantly less space than controls. Species-specific responses were similar regardless of community age. The non-native colonial ascidian Diplosoma listerianum responded positively to increased disturbance frequency and magnitude, and occupied more primary space in treatments than in controls. The resident solitary ascidian Molgula manhattensis responded negatively to increased disturbance frequency and magnitude, and occupied less primary space in treatments than in controls. Small-scale biological disturbances, by creating space, may facilitate the success of invasive species and colonial organisms in the development of subtidal hard substrate communities.     

H‐Cadherin expression reduces invasion of malignant melanoma

Melanocytic behavior, survival, and proliferation are regulated through a complex system of cell–cell adhesion molecules. Pathologic changes leading to development of malignant melanoma, upset the delicate homeostatic balance between melanocytes and keratinocytes and can lead to altered expression of cell–cell adhesion and cell–cell communication molecules. Malignant transformation of melanocytes frequently coincides with loss of E‐cadherin expression. We now show loss of another member of the superfamily of classical cadherins, H‐cadherin (CDH13), which may be involved in the development of malignant melanoma. The provided data show that H‐cadherin expression is lost in nearly 80% of the analyzed melanoma cell lines. Knockdown of H‐cadherin using siRNA increases invasive capacity in melanocytes. Functional assays show that the re‐expression of H‐cadherin decreases migration and invasion capacity, as well as anchorage‐independent growth in comparison to control melanoma cells. Furthermore, melanoma cells, which re‐express H‐cadherin via stable transfection show a reduction in rate of tumor growth in a nu/nu mouse tumor model in comparison to the parental control transfected cell lines. Our study presents for the first time the down‐regulation of H‐cadherin in malignant melanomas and its possible functional relevance in maintenance healthy skin architecture.     

Species diversity in postglacial diatom lake communities of Finland

Species diversity in three sections of Flandrian sediment from the Finnish Lake District was studied, together with orthodox diatom stratigraphy, to analyse the pattern of change in diatom communities over the postglacial time.The general agreement of the two approaches is clear, and in particular there is a positive direct relationship between the temporal development of these aquatic systems and changes in the diatom diversity.As indicated by both the quantitative inventory and the species diversity, these diatom communities consisted of few species immediately after glaciation at 10 000 radiocarbon years B.P. The minimum diversity at 9 000 B.P. coincides with the maximum of Melosira islandica ssp. helvetica. A trend to development of a larger number of equally abundant species, and higher total diversity followed isolation of the lake from the Baltic Sea at 8 000 B.P. This is consistent with earlier results of Duthie and Sreenivasa that the number of individuals and total diversity of the samples increase over the postglacial time.     

松嫩平原南部主要群落植物多样性的比较研究

应用Ｍａｒｇａｌｅｆ（Ｒ１）和Ｍｅｎｈｉｎｉｃｋ（Ｒ２）丰富度指数、Ｈｉｌｌ多样性指数（Ｎ１,Ｎ２）和Ｐｉｅｌｏｕ均匀度指数（Ｅ）比较研究了松嫩平原南部１４个主要群落的植物多样性、生活型多样性及植物多样性与群落演替的关系结果表明,分布于低平原的羊草－蔓萎陵菜群落的植物多样性和丰富度指数最大,Ｒ１为１１．９６,Ｒ２为５．２４,Ｎ１为１３．９２,Ｎ２为８．７６,分布于固定砂丘的榆树疏林和贝加尔针茅等４个群落有较高的植物多样性,而分布于碱化草甸的角碱蓬等群落植物多样性最小,Ｒ１为１．３１,Ｒ２为０７１,Ｎ１为１．８４,Ｎ２为１．４６．具有较高植物多样性的群落其植物生活型多样性指数也较高．在演替系列中,羊草群落的植物多样性指数介于演替初期和中期阶段之间．     

Species evenness and invasion resistance of experimental grassland communities

Concern for biodiversity loss coupled with the accelerated rate of biological invasions has provoked much interest in assessing how native plant species diversity affects invasibility. Although experimental studies extensively document the effects of species richness on invader performance, the role of species evenness in such studies is rarely examined. Species evenness warrants more attention because the relative abundances of species can account for substantially more of the variance in plant community diversity and tend to change more rapidly and more frequently in response to disturbances than the absolute numbers of species. In this study, we experimentally manipulated species evenness within native prairie grassland mesocosms. We assessed how evenness affected primary productivity, light availability and the resistance of native communities to invasion. The primary productivity of native communities increased significantly with species evenness, and this increase in productivity was accompanied by significant decreases in light availability. However, evenness had no effect on native community resistance to invasion by three common exotic invasive species. In this study, niche complementarity provides a potential mechanism for the effects of evenness on productivity and light availability, but these effects apparently were not strong enough to alter the invasibility of the experimental communities. Our results suggest that species evenness enhances community productivity but provides no benefit to invasion resistance in otherwise functionally diverse communities.     

Species diversity of grasses promotes genotypic diversity of clover populations in simulated communities

Recent studies in community genetics have demonstrated strong effects of intraspecific genetic variation on the diversity of interacting species but largely ignored the potential for effects of species diversity on genetic diversity, which could also create a positive correlation between these two levels of biodiversity. Here we investigated the role that species diversity of competitors could play in shaping the genotypic diversity of a focal species, using a modified version of an existing model of grass–clover dynamics. We simulated communities in which clover genotypes varied in their relative competitive ability when growing adjacent to different grass species. Under many parameter combinations, communities with greater species richness of grasses retained greater genotypic richness within the clover population. Increasing grass species richness effectively increased biotic environmental heterogeneity with respect to clover growth, thereby promoting the maintenance of genotypic diversity. This result depended on three conditions being met: (1) a sufficiently strong tradeoff among genotypes in their fitness when growing with different grass species, (2) partial de‐coupling of competition and facilitation, with grass and clover capable of sharing microsites rather than strictly excluding one another, and (3) sufficiently high rates of clover growth and clonal spread, which allowed clover genotypes to ‘track’ the shifting mosaic of grass species. Our results demonstrate that species diversity can act as an important promoter of genotypic diversity, and they provide testable predictions concerning the conditions that promote this outcome in nature.     

三江平原湿地典型植物群落物种多样性研究

以三江平原分布最广的毛果苔草(Carex lasiocarpa)群落和小叶章(Calamagrostis angustifolia)群落为研究对象,研究2个群落的植物物种及其组成特征。结果表明,毛果苔草群落以毛果苔草为优势种,以漂筏苔草(C.pseudocuraica)为亚优势种,二者的重要值之和为56.4%;小叶章群落以小叶章为优势种,其重要值为50.8%。物种多样性分析表明,毛果苔草群落和小叶章群落的Simpson指数(D)、Shannon-Wiener指数(H)和Pielou均匀度指数(J)均有较大波动,且H与J呈显著正相关,与D呈显著负相关,与S无显著相关关系;毛果苔草群落的H、D、J和S均高于小叶章群落,但差异不显著;2群落的相似性指数为46.5%,表明二者间存在一定的联系。     

Species diversity and functional assessment of macroinvertebrate communities in Austrian rivers

We applied an extensive data set from 211 locations along Austrian rivers to assess community structure and the ratios of functional feeding groups of benthic macroinvertebrates. A total of 569 taxa have been identified. At the catchment scale, the Enns, Salzach, and Traun Rivers exhibited the highest taxa richness whereas the Inn River showed the lowest richness. Beta-diversity was highest along the impounded and fragmented Enns and Drau Rivers. Consequently, high corridor diversity corresponded to a low degree of nestedness. Overall, scrapers and gathering-collectors dominated the benthic community. Further, the relationship between habitat conditions and metrics based on functional feeding groups were statistically analyzed to validate the potential of these metrics as indicators of ecosystem attributes. We examined four major ecosystem attributes: species diversity, material cycling, longitudinal material transport, and lateral material input. Multiple regression analyses for midorder rivers demonstrated that metrics were significantly related to habitat conditions. For example, the metric set indicating primary production was positively correlated with periphyton cover, dissolved oxygen, dominant sediment size, and average annual discharge. Overall, most metrics exhibited unique responses to habitat conditions, implying that they are useful proxies of ecosystem attributes. Thus, a function-based approach based on macroinvertebrates has the potential to become an effective tool for the assessment of river ecosystems.     

Interspecific diversity reduces and functionally substitutes for intraspecific variation in biofilm communities

Diversity has a key role in the dynamics and resilience of communities and both interspecific (species) and intraspecific (genotypic) diversity can have important effects on community structure and function. However, a critical and unresolved question for understanding the ecology of a community is to what extent these two levels of diversity are functionally substitutable? Here we show, for a mixed-species biofilm community composed of Pseudomonas aeruginosa, P. protegens and Klebsiella pneumoniae, that increased interspecific diversity reduces and functionally substitutes for intraspecific diversity in mediating tolerance to stress. Biofilm populations generated high percentages of genotypic variants, which were largely absent in biofilm communities. Biofilms with either high intra- or interspecific diversity were more tolerant to SDS stress than biofilms with no or low diversity. Unexpectedly, genotypic variants decreased the tolerance of biofilm communities when experimentally introduced into the communities. For example, substituting P. protegens wild type with its genotypic variant within biofilm communities decreased SDS tolerance by twofold, apparently due to perturbation of interspecific interactions. A decrease in variant frequency was also observed when biofilm populations were exposed to cell-free effluents from another species, suggesting that extracellular factors have a role in selection against the appearance of intraspecific variants. This work demonstrates the functional substitution of inter- and intraspecific diversity for an emergent property of biofilms. It also provides a potential explanation for a long-standing paradox in microbiology, in which morphotypic variants are common in laboratory grown biofilm populations, but are rare in diverse, environmental biofilm communities.     

Species identity, diversity and microbial carbon flow in reassembling macrobenthic communities

Intense disturbance may locally destroy patches of habitat and shape the landscape into a mosaic of reassembling communities. The development of ecosystem properties during such community reassembly is poorly understood. In intertidal bare sediments, trophic relations between microphytobenthos or heterotrophic bacteria and macrofauna invertebrates may guarantee fundamental ecosystem properties such as carbon flow through the food web. We studied the dynamic relation between reassembling macrofauna communities and such microbial carbon flow during recovery after severe disturbance. We deliberately induced prolonged hypoxia in winter and early summer and allowed recolonisation for periods of two and five months. Carbon flow was quantified from basal resources (microphytobenthos and bacteria) to intermediate consumers using ¹³C as a tracer. Within the period of study (5 months), microbial carbon flow fully recovered, although macrofauna diversity was still very low compared to the natural communities (ranging from 6 to 17 species). More than 90% of microbial carbon flow to macrofauna was due to the consumers that recolonised within two months. Two of these species were dominant contributors to microphytobenthos carbon transfer to fauna. Furthermore, at an early stage of reassembly, this ecosystem property was remarkably similar when disturbance took place at different times of the year (winter or early summer), although there were differences in assemblage composition and functional diversity. We conclude that species assemblages and ecosystem function developed relatively independently in this benthic system. We discuss which ecological factors may have caused such non-parallel development of macrofaunal communities and carbon flow.     

Effects of plant diversity on invasion of weed species in experimental pasture communities

Studies have shown that weed invasion into grasslands may be suppressed if the resident plant community is sufficiently diverse. The objective of this study was to determine whether increased forage plant diversity in grazed pasture communities might be associated with reduced weed abundance both in the aboveground vegetation and soil seed bank. Data were collected from a pasture experiment established in 1994 in Missouri, USA. The experiment consisted of 15 m×15 m plots sown with Festuca arundinacea Schreb. or Bromus inermis Leysser as a base species in mixtures of 1, 2, 3, 6, or 8 forage species. The plots were grazed by cattle during each growing season from 1998 to 2002. Aboveground plant species composition in each plot was measured using a point step method. Soil cores were collected in 1999 and 2002, and the species composition of germinable weed seeds in plots were evaluated by identifying seedlings as they germinated over an 8-week period. Species diversity was measured using several indices: species richness (S), Shannon–Wiener diversity index (H^′), and forage species evenness (J). Aboveground weed abundance in plots was unrelated to forage species richness (S), but weed abundance declined as the evenness (J) of resident forage species increased in mixtures. The species composition of mixtures may have affected weed abundance. Weeds both in the soil seed bank and aboveground vegetation were less abundant in mixtures that contained F. arundinacea compared with mixtures that contained B. inermis. Although variables like forage plant productivity may also suppress weed abundance in pastures, our results suggest that maintaining an evenly distributed mixture of forage species may help suppress weeds as well.

Zusammenfassung

Untersuchungen haben gezeigt, dass die Unkrautinvasion in Grünländer unterdrückt sein kann, wenn die ansässige Pflanzengemeinschaft ausreichend divers ist. Die Zielsetzung dieser Untersuchung war es zu bestimmen, ob eine erhöhte Futterpflanzendiversität in beweideten Grünlandgemeinschaften mit einer verringerten Unkrautabundanz sowohl bei der oberirdischen Vegetation als auch in der Bodensamenbank verbunden sein kann. Die Daten wurden in einem Weidelandexperiment gesammelt, das 1994 in Missouri, USA, etabliert wurde. Das Experiment bestand aus 15 m×15 m Probeflächen, die mit Festuca arundinacea Schreb. oder Bromus inermis Leysser als Basisarten in Mischungen von 1, 2, 3, 6 oder 8 Futterarten eingesät waren. Die Probeflächen wurden während jeder Wachstumssaison von 1998 bis 2002 stark mit Vieh beweidet. Die oberirdische Pflanzenartenzusammensetzung wurde in jeder Fläche mit einer Punktstopmethode gemessen. Bodenproben wurden 1999 und 2002 gesammelt und die Artenzusammensetzung der keimfähigen Unkrautsamen wurde in den Probeflächen bewertet, indem die Keimlinge identifiziert wurden, die in einer 8-wöchigen Periode keimten. Die Artendiversität wurde unter Verwendung verschiedener Indizes gemessen: Artenreichtum (S), Shannon–Wiener-Diversitätsindex (H^′) und Futterarten-Äquitabilität (J). Die oberirdische Unkrautartenabundanz in den Probeflächen stand in keiner Beziehung zum Futterartenreichtum (S), aber die Unkrautabundanz nahm ab, wenn die Äquitabilität (J) der ansässigen Futterarten in den Mischungen zunahm. Die Artenzusammensetzung der Mischungen könnte die Unkrautabundanz beeinflusst haben. Sowohl die Unkräuter in der Bodensamenbank, als auch in der oberirdischen Vegetation waren weniger abundant in Mischungen, die F. arundinacea enthielten, im Vergleich zu denen, die B. inermis enthielten. Obgleich Variablen wie die Futterpflanzenproduktivität möglicherweise ebenfalls die Unkrautabundanz im Weideland unterdrücken, lassen unsere Ergebnisse vermuten, dass die Aufrechterhaltung einer gleichmäßigen Mischung von Futterarten ebenfalls helfen kann, die Unkräuter zu unterdrücken.     

Population‐level traits that affect,and do not affect,invasion success

What allows some species to successfully colonize a novel environment while others fail? Numerous studies in invasion biology have sought to answer this question, but those studies have tended to focus on traits of species or individuals (e.g. body size, seed size, seed number), and these traits have largely been found to be weak predictors of invasion success. However, characteristics of colonizing populations (e.g. genetic diversity, density, age structure) might also be important for successful establishment, as the authors of a study published in this issue of Molecular Ecology show ( Crawford & Whitney 2010 ). By experimentally manipulating the density and genetic diversity of colonizing populations of Arabidopsis thaliana, the authors found that genetic diversity, but not population density, increased colonization success. Importantly, the effects of genetic diversity on colonization success were both additive and non‐additive, suggesting that traits associated with particular genotypes and complimentarity among genotypes contribute to colonization success. This research highlights the importance of considering within‐species variation and characteristics of entire populations in predicting colonization success.     

PCR–DGGE‐based methodologies to assess diversity and dynamics of Aeromonas communities

Aims: Aeromonas is ubiquitous in aquatic environments and may cause infectious diseases in fish and humans. However, reliable and specific methods to evaluate the diversity and dynamics of Aeromonas populations are currently unavailable. This study aimed to develop PCR–DGGE methodologies for culture‐independent analysis of Aeromonas populations in water systems. Methods and Results: Three primer sets were designed to amplify selected sections of genes gyrB, rpoD and sodB from Aeromonas. Their specificity was confirmed by in silico analysis and by PCR on DNA from pure cultures. Estuarine water samples were analyzed by PCR–DGGE using those primers. DGGE patterns clearly clustered according to seasonal factors, and Aeromonas communities were surprisingly stable along a salinity gradient. Sequences of cloned amplicons affiliated to sequences belonging to seven Aeromonas species previously isolated from the same environment. Conclusions: The three systems used showed to be useful to describe the diversity of Aeromonas communities. However, the combined use of more than one primer set is advisable. Significance and Impact of the Study: The methods presented here can be applied to understand the natural pool of Aeromonas and also to monitor and control these bacteria in aquatic reservoirs.     

Differentiating between effects of invasion and diversity: impacts of aboveground plant communities on belowground fungal communities

Exotic plant species can affect soil microbial communities with the potential for community and ecosystem feedbacks. Yet, separating the effects of exotics from confounded changes in plant community diversity still remains a challenge. We focused on how plant diversity and native or exotic life history affected root fungi because of their significant roles in community and ecosystem processes. Specifically, we examined how fungi colonizing plant roots were affected by plant richness (one, two or four species) replicated across a range of plant community mixtures (natives, exotics, native-exotic mixtures). Fungal biomass inside roots was affected independently by plant richness and mixture, while root fungal community composition was affected only by plant richness. Extraradical networks also increased in size with plant richness. By contrast, plant biomass was a function of plant mixture, with natives consistently smaller than exotics and native-exotic mixtures intermediate. Plant invasions may have an impact on the belowground community primarily through their effects on diversity, at least in the short-term. Disentangling the effects of diversity and invasion on belowground microbial communities can help us to understand both the controllers of belowground resilience and mechanisms of successful colonization and spread of exotic plants.