Overlap of temporal niches among four sympatric species of shrews

Hypotheses about the dependence of circadian activity from metabolic rate and the segregation of temporal niches among competing species were verified by the study of activity patterns in a shrew community of two semiaquatic species,Neomys anomalus Cabrera, 1907 andN. fodiens (Pennant, 1771), and two terrestrial species,Sorex araneus Linnaeus, 1758 andS. minutus Linnaeus, 1766, co-existing in wet habitats of Białowieża Forest (E Poland). In ten trapping sessions, performed in early summer between 1991 and 2000, traps were open 24 hours continuously and patrolled at 1:00, 5:00, 10:00, 15:00, and 20:00. All the shrew species were most active between 20:00 and 1:00, and least active around mid-day (10:00–15:00). However, activity of the twoSorex species was lower than that of the twoNeomys species in the period 20:00–1:00, but higher in the period 15:00–20:00. BothNeomys species displayed clearly nocturnal, unimodal patterns of activity. In contrast, activity of bothSorex species was relatively evenly distributed over 24 hours and they increased their activity earlier (ie after 15:00) than bothNeomys species (after 20:00). These results confirm the idea that small shrew species with higher metabolic rate have more frequent and more equally distributed activity bouts than large species. Overlap of temporal niches was the highest within genera (99.29% between bothNeomys species and 98.36% between bothSorex species), the lowest betweenN. fodiens andS. araneus (88.26%) andS. minutus (89.34%), and intermediate betweenN. anomalus and bothSorex species (91.78 and 93.34%, respectively). Such high interspecific overlaps in activity suggest a joint-action of other mechanisms that separate ecological niches of these species also in other dimensions (eg food, microhabitat).     

Mass extinctions,biodiversity explosions and ecological niches

The logistic model proposed by Courtillot and Gaudemer to describe the growth of biodiversity during geological ages is more explored here and further developed. A new parameterisation is first proposed. Another expression of this model is obtained by introducing a new variable representing the number of ecological niches. It appears that the rates of increase of biodiversity during Jurassic and Cretaceous periods is quite different from other ones. The classical literature essentially focuses on possible extinction mechanisms, but explosions in biodiversity must be more precisely explored. For this purpose, on the basis of data analysis through different expressions of the logistic model, different ecological mechanisms can be assumed (e.g., qualitative and quantitative niches changes, possible appearance of new kinds of ecological relationships, such as 'niche-sharing', which involves coexistence or cooperation), even if genetic processes must also be involved. Finally, we emphasise the astonishing speed of biological diversification following a 'catastrophic' mass extinction. We could refer to this feature as 'catastrophic biological diversification'.     

Environmental factors shaping the ecological niches of ammonia-oxidizing archaea

For more than 100 years it was believed that bacteria were the only group responsible for the oxidation of ammonia. However, recently, a new strain of archaea bearing a putative ammonia monooxygenase subunit A ( amoA ) gene and able to oxidize ammonia was isolated from a marine aquarium tank. Ammonia-oxidizing archaea (AOA) were subsequently discovered in many ecosystems of varied characteristics and even found as the predominant causal organisms in some environments. Here, we summarize the current knowledge on the environmental conditions related to the presence of AOA and discuss the possible site-related properties. Considering these data, we deduct the possible niches of AOA based on pH, sulfide and phosphate levels. It is proposed that the AOA might be important actors within the nitrogen cycle in low-nutrient, low-pH, and sulfide-containing environments.     

Denitrification: ecological niches,competition and survival

Organisms with the denitrification capacity are widely distributed and in high density in nature. It is not well understood why they are so successful. A survey of denitrifying enzyme content of various habitats is presented which indicates a role of carbon and oxygen, but not nitrate, in affecting denitrifier populations. It is suggested that organic carbon is more important than oxygen status in determining denitrifying enzyme content of habitats. In low oxygen environments, denitrifiers compete with organisms that dissimilate nitrate to ammonium, a process which conserves nitrogen. The energetic and kinetic parameters that affect this competition are evaluated. The latter is examined using Michaelis-Menten theoretical models by varying V_max, K_m, and S_o (substrate concentration) for the two competing populations. The outcome predicted by these models is presented and discussed in relation to previous data on population densities and K_m values for representatives of these competing groups. These models suggest the conditions required to achieve changes in partitioning between the two fates of nitrate. These considerations are important if one is to be able to evaluate and successfully “manage” the fate of nitrate in any habitat.     

Diversity and significance of Burkholderia species occupying diverse ecological niches

Members of the genus Burkholderia are versatile organisms that occupy a surprisingly wide range of ecological niches. These bacteria are exploited for biocontrol, bioremediation and plant growth promotion purposes, but safety issues regarding human infections, especially in cystic fibrosis patients, have not been solved. This minireview gives an overview of the taxonomic and ecological diversity of the genus with particular emphasis on strains belonging to the Burkholderia cepacia complex and addresses the important question whether 'good' and 'bad' strains are actually the same.     

Predicting prokaryotic ecological niches using genome sequence analysis

Automated DNA sequencing technology is so rapid that analysis has become the rate-limiting step. Hundreds of prokaryotic genome sequences are publicly available, with new genomes uploaded at the rate of approximately 20 per month. As a result, this growing body of genome sequences will include microorganisms not previously identified, isolated, or observed. We hypothesize that evolutionary pressure exerted by an ecological niche selects for a similar genetic repertoire in those prokaryotes that occupy the same niche, and that this is due to both vertical and horizontal transmission. To test this, we have developed a novel method to classify prokaryotes, by calculating their Pfam protein domain distributions and clustering them with all other sequenced prokaryotic species. Clusters of organisms are visualized in two dimensions as 'mountains' on a topological map. When compared to a phylogenetic map constructed using 16S rRNA, this map more accurately clusters prokaryotes according to functional and environmental attributes. We demonstrate the ability of this map, which we term a "niche map", to cluster according to ecological niche both quantitatively and qualitatively, and propose that this method be used to associate uncharacterized prokaryotes with their ecological niche as a means of predicting their functional role directly from their genome sequence.     

几种十字花科蔬菜害虫生态位的研究

以Levins生态位宽度指数和Pianka生态位重叠指数估计发生在同一营养阶层的 4种主要十字花科植物害虫营养生态位、时间生态位和空间生态位的生态位宽度和重叠度。结果表明小菜蛾、黄曲条跳甲、菜粉蝶和小猿叶甲 4种昆虫的生态位并不完全重叠。     

Weak phylogenetic effects on ecological niches of Sylvia warblers

To understand the evolution of ecological niches it is important to know whether niche evolution is constrained by phylogeny. We approached this question for Sylvia warblers by testing if closely related species are more similar in 20 ecologically relevant morphological traits than distantly related species. Phylogenetic relatedness was quantified using a molecular phylogeny based on the mitochondrial cytochrome b gene. By Principal Component Analysis (PCA) two major niche axes were extracted. We tested the individual ecomorphological traits and the positions of the species on the PCA axes for phylogenetic effects using Mantel tests. The results demonstrated small but significant phylogenetic effects only for the length of the middle toe, a trait probably correlated with locomotion. In general, however, phylogenetic effects were very weak. This suggests that ecological niches in passerine birds have the potential to evolve rapidly and are not subject to major phylogenetic constraints.     

Disentangling the importance of ecological niches from stochastic processes across scales

Deterministic theories in community ecology suggest that local, niche-based processes, such as environmental filtering, biotic interactions and interspecific trade-offs largely determine patterns of species diversity and composition. In contrast, more stochastic theories emphasize the importance of chance colonization, random extinction and ecological drift. The schisms between deterministic and stochastic perspectives, which date back to the earliest days of ecology, continue to fuel contemporary debates (e.g. niches versus neutrality). As illustrated by the pioneering studies of Robert H. MacArthur and co-workers, resolution to these debates requires consideration of how the importance of local processes changes across scales. Here, we develop a framework for disentangling the relative importance of deterministic and stochastic processes in generating site-to-site variation in species composition (β-diversity) along ecological gradients (disturbance, productivity and biotic interactions) and among biogeographic regions that differ in the size of the regional species pool. We illustrate how to discern the importance of deterministic processes using null-model approaches that explicitly account for local and regional factors that inherently create stochastic turnover. By embracing processes across scales, we can build a more synthetic framework for understanding how niches structure patterns of biodiversity in the face of stochastic processes that emerge from local and biogeographic factors.     

Remanence and survival of commercial yeast in different ecological niches of the vineyard

The use of commercial wine yeast strains as starters has been grown extensively over the past three decades. Wine yeasts are annually released in winery environments; however, little is known about the fate of these strains in the vineyard. To evaluate the industrial starter yeasts' ability to survive in nature and become part of the natural microbiota of musts, commercial yeast was disseminated voluntarily in an experimental vineyard in the Madrid region (Spain). A large sampling plan was devised over 3 years, including samples of grapes, leaves, bark and soil. The disseminated yeast was well represented in the vineyard during the first 8 months. After 2 years, the commercial yeast strain had not survived in the sprayed plants, but a residual population was found in plants situated 50 m east of the sprayed area. After 3 years, commercial yeast disseminated was not found in the sampled vineyard. Grapes and soil showed the highest number of yeasts isolated in the vegetative period, the bark being the main natural reservoir during the resting stages. The result of analysis of population variations from year to year indicated that permanent implantation of commercial strain (K1M) in the vineyard did not occur and its presence was limited in time.     

Differences between ecological niches in juvenileSalix cinerea andS. pentandra

Comparison of growth rates ofSalix cinerea andS. pentandra seedlings in terrestric, limosal, and littoral ecophases showed different life strategies of juvenile stages of these willows. Several characters determining ecological niches of both species are summarized.     

Signature of ecological partitioning in the maintenance of damselfly diversity

1.?Ecological differences among co-occurring taxa are often invoked as an explanation for the maintenance of biodiversity. Whether these differences facilitate coexistence, which allows unequal competitors to remain in systems and thus maintain biodiversity, is still unclear. 2.?Here, we used observational and experimental studies to test for ecological partitioning in ways that would promote coexistence among three co-occurring damselfly genera. We evaluated two necessary conditions for coexistence: (i) that the damselfly genera differ in their abilities to engage in interactions with other damselfly genera and environmental conditions such that their relative abundances covary differently along environmental gradients and (ii) that an increase in intrageneric abundance is more detrimental to performance-related demographic features of each genus than increases in intergeneric abundances. 3.?Observational studies across 40 lakes showed that relative abundances of each genus covaried differently along an environmental gradient of lake abiotic and biotic features consistent with ecological partitioning. Field experiments in which we manipulated both intra- and intergeneric densities demonstrated that per capita growth rates of each genus are negatively density-dependent and are only limited by increases in intra- not intergeneric densities. 4.?Collectively, these results show a clear signature of ecological partitioning among each genus, which should prevent competitive exclusion and maintain each genus in this system. The results do not guarantee local coexistence among the three genera but are consistent with criteria that should promote their coexistence. Our results also suggest that a food web model coupling keystone predation and apparent competition is likely necessary to explain the ecological dynamics of persistence among these genera.     

Metabolic partitioning across individuals in ecological communities

The mechanistic origin and shape of body‐size distributions within communities are of considerable interest in ecology. A recently proposed light‐limitation model provides a good fit to the distribution of tree sizes in a tropical forest plot. The maximum entropy theory of ecology (METE) also predicts size distributions, but without explicit mechanistic assumptions, and thus its predictions should hold in ecosystems generally, regardless of whether they are light limited. A comparison of the form and success of the predictions of the model and the theory can provide insight into the role that mechanisms play in shaping patterns in macroecology. The prediction by the METE of the size distribution of organisms is remarkably similar in form to that of the model: power‐law behaviour in the size range where the light‐limitation model predicts a power law, and exponential behaviour in the size range where the model predicts an exponential tail. The METE prediction matches data widely, including data in ecosystems where light is not limiting. We show examples for three disparate communities: trees in a tropical forest plot; herbaceous plants in a treeless subalpine meadow; and island arthropods. We conclude that the success of METE's predicted form across systems, including those that are clearly not light limited, enriches our capacity to predict patterns in macroecology without making explicit mechanistic assumptions and provides a unified framework that can capture ubiquitous features of those patterns across diverse ecosystems governed by a variety of mechanisms.