Discovery of imidazo[1,2-a]-, [1,2,4]triazolo[4,3-a]-, and [1,2,4]triazolo[1,5-a]pyridine-8-carboxamide negative allosteric modulators of metabotropic glutamate receptor subtype 5

Based on a hypothesis that an intramolecular hydrogen bond was present in our lead series of picolinamide mGlu₅ NAMs, we reasoned that an inactive nicotinamide series could be modified through introduction of a fused heterocyclic core to generate potent mGlu₅ NAMs. In this Letter, we describe the synthesis and evaluation of compounds that demonstrate the viability of that approach. Selected analogs were profiled in a variety of in vitro assays, and two compounds were evaluated in rat pharmacokinetic studies and a mouse model of obsessive-compulsive disorder. Ancillary pharmacology screening revealed that members of this series exhibited moderate inhibition of the dopamine transporter (DAT), and SAR was developed that expanded the selectivity for mGlu₅ versus DAT.     

Design,synthesis and evaluation of antitumor acylated monoaminopyrroloquinazolines

Pyrroloquinazoline is a privileged chemical scaffold with diverse biological activities. We recently described a series of N-3 acylated 1,3-diaminopyrroloquinazolines with potent anticancer activities. The N-1 primary amino group in 1,3-diaminopyrroloquinazoline is critical for its inhibitory activity against dihydrofolate reductase (DHFR). In order to design out this unnecessary DHFR inhibition activity and further expand the chemical space associated with pyrroloquinazoline, we removed the N-1 primary amino group. In this report, we describe our design and synthesis of a series of N-3 acylated monoaminopyrroloquinazolines. Biological evaluation of these compounds identified a naphthamide 4a as a potent anticancer agent (GI₅₀ = 88–200 nM), suggesting that removing the N-1 primary amino group in 1,3-diaminopyrroloquinazoline is a useful chemical modification that can be introduced to improve the anticancer activity.     

Discovery of dual positive allosteric modulators (PAMs) of the metabotropic glutamate 2 receptor and CysLT1 antagonists for treating migraine headache

Pyridylmethylsulfonamide series were the first reported example of positive allosteric modulators (PAM) of the mGlu₂ receptor. The hydroxyacetophenone scaffold is a second series of mGlu₂ PAMs we have identified. This series of molecules are potent mGlu₂ potentiators and possess significant CysLT1 (cysteinyl leukotriene receptor 1) antagonist activity, showing in vivo efficacy in a dural plasma protein extravasation (PPE) model of migraine. In this paper, we describe the dual SAR, pharmacokinetics and preclinical in vivo efficacy data for a tetrazole containing hydroxyacetophenone scaffold.     

Design,synthesis, and biological evaluation of deuterated phenylpropionic acid derivatives as potent and long-acting free fatty acid receptor 1 agonists

The free fatty acid receptor 1 (FFA1) is a potential target due to its function in enhancement of glucose-stimulated insulin secretion. Takeda’s compound 1 has robustly in vitro activity for FFA1, but it has been suffered from poor pharmacokinetic (PK) profiles because the phenylpropanoic acid is vulnerable to β-oxidation. To identify orally available agonists, we tried to interdict the metabolically labile group by incorporating two deuterium atoms at the α-position of phenylpropionic acid. Interestingly, the differences of physicochemical properties between hydrogen and deuterium are quite small, but there are many differences in the structure-activity relationship between phenylpropionic acid series and present deuterated series. Further optimizations of deuterated series led to the discovery of compound 18, which exhibited a superior balance in terms of in vitro activity, lipophilicity, and solubility. Better still, compound 18 revealed a lower clearance (CL = 0.44 L/h/kg), higher maximum concentration (C_max = 7584.27 μg/L), and longer half-life (T_1/2 = 4.16 h), resulting in a >23-fold exposure than compound 1. In subsequent in vivo pharmacodynamic studies, compound 18 showed a robustly glucose-lowering effect in rodent without the risk of hypoglycemia.     

Clobenpropit analogs as dual activity ligands for the histamine H3 and H4 receptors: Synthesis,pharmacological evaluation,and cross-target QSAR studies

Previous studies have demonstrated that clobenpropit (N-(4-chlorobenzyl)-S-[3-(4(5)-imidazolyl)propyl]isothiourea) binds to both the human histamine H₃ receptor (H₃R) and H₄ receptor (H₄R). In this paper, we describe the synthesis and pharmacological characterization of a series of clobenpropit analogs, which vary in the functional group adjacent to the isothiourea moiety in order to study structural requirements for H₃R and H₄R ligands. The compounds show moderate to high affinity for both the human H₃R and H₄R. Furthermore, the changes in the functional group attached to the isothiourea moiety modulate the intrinsic activity of the ligands at the H₄R, ranging from neutral antagonism to full agonism. QSAR models have been generated in order to explain the H₃R and H₄R affinities.     

Inhibition of acid, alkaline, and tyrosine (PTP1B) phosphatases by novel vanadium complexes

In the course of our investigations of vanadium-containing complexes for use as insulin-enhancing agents, we have generated a series of novel vanadium coordination complexes with bidentate ligands. Specifically we have focused on two ligands: anthranilate (anc⁻), a natural metabolite of tryptophan, and imidizole-4-carboxylate (imc⁻), meant to mimic naturally occurring N-donor ligands. For each ligand, we have generated a series of complexes containing the V(III), V(IV), and V(V) oxidation states. Each complex was investigated using phosphatase inhibition studies of three different phosphatases (acid, alkaline, and tyrosine (PTP1B) phosphatase) as prima facia evidence for potential use as an insulin-enhancing agent. Using p-nitrophenyl phosphate as an artificial phosphatase substrate, the levels of inhibition were determined by measuring the absorbance of the product at 405 nm using UV/vis spectroscopy. Under our experimental conditions, for instance, V(imc)₃ appears to be as potent an inhibitor of alkaline phosphatase as sodium orthovanadate when comparing the K_cat/K_m term. VO(anc)₂ is as potent an inhibitor of acid phosphatase and tyrosine phosphatase as the Na₃VO₄. Thus, use of these complexes can increase our mechanistic understanding of the effects of vanadium in vivo.     

Hydrocarbons,phenols and sterols of the testa and pigment strand in the grain of Hordeum distichon

Material from the testa of decorticated barley grains contained hydrocarbons, esters, triglycerides, free sterols, 5-n-alkylresorcinols, and traces of free alcohols, carbonyl compounds, and various polar, acidic materials. The hydrocarbon fraction was mainly a series of n-alkanes, extending at least from C₁₁ to C₃₆, in which the C₂₉ and C₃₁ components were prominent. Two minor series of alkanes were also present. Sometimes a trace of an unsaturated hydrocarbon was detected. The ester fraction contained sterols and alkanols esterified by fatty acids, which differed in relative amounts from the fatty acids found in the triglycerides. The triglycerides were thought to have leached from within the grain. At least five free sterols were present, including sitosterol and campesterol. The 5-n-alkylresorcinols were at least twelve members of a homologous series, of which four, C₂₅, C₂₇, C₂₉, and C₃₁, made 98% of the total. Members of the series with even numbers of carbon atoms were also present. It is suggested that they are partly responsible for excluding microorganisms from the interior of the grain. The testa membrane, with the associated pigment strand, contained an estolide of fatty acids and various hydroxyacids, a polysaccharide component, and uncharacterized material.     

Biogenesis of cytochrome b6 in photosynthetic membranes

In chloroplasts, binding of a c′-heme to cytochrome b₆ on the stromal side of the thylakoid membranes requires a specific mechanism distinct from the one at work for c-heme binding to cytochromes f and c₆ on the lumenal side of membranes. Here, we show that the major protein components of this pathway, the CCBs, are bona fide transmembrane proteins. We demonstrate their association in a series of hetero-oligomeric complexes, some of which interact transiently with cytochrome b₆ in the process of heme delivery to the apoprotein. In addition, we provide preliminary evidence for functional assembly of cytochrome b₆f complexes even in the absence of c′-heme binding to cytochrome b₆. Finally, we present a sequential model for apo- to holo-cytochrome b₆ maturation integrated within the assembly pathway of b₆f complexes in the thylakoid membranes.     

Parafurnishius,an Induan (Lower Triassic) conodont new genus from northeastern Sichuan Province,southwest China and its evolutionary implications

A fundamental aspect of taxonomy at the generic level, critical to understand Early Triassic conodont evolution, is the composition of the multielement apparatus. In this paper, we document a platform-bearing new conodont genus, Parafurnishius n. gen., as well as its multielement apparatus from the Griesbachian Feixianguan Formation (Lower Triassic) in Xuanhan County, northeastern Sichuan Province, southwest China. The new conodont genus is characterized by numerous robust and irregularly distributed conical denticles with variable platform morphology that has a possible affinity with the P₁ elements of Furnishius. These genera have apparatuses similar to those of Ellisonia and are classified with the family Ellisoniidae. The strong intraspecific variation of P₁ elements and the growth series within the entire sample population suggest that Parafurnishius may have evolved from the Griesbachian Isarcicella by developing random denticle positioning away from the platform centre, and then possibly evolved into younger Triassic Furnishius by developing a stable blade configuration. This preferred interpretation implies an ellisonid apparatus for Isarcicella. Alternatively, Parafurnishius may have evolved from Ellisonia and developed a homeomorphic P₁ element with Isarcicella. This new taxon has strong intraspecific variation of denticle growth orientation during the Early Triassic.     

Climatic information recorded in stable carbon isotopes in tree rings of Cryptomeria fortunei,Tianmu Mountain,China

The Cryptomeria fortunei (CF) tree-ring δ¹³C_p series, which was collected from the West Tianmu Mountain forestland (30°20′ N, 119°26′ E), located in the north-west of Zhejiang Province, China, belonging to the northern margin of the mid-subtropical region of Eastern China, were determined based on cross-dated tree-ring age. There was a significant decline in the δ¹³C_p series occurring from 1685 to 1985, more especially from 1835 to 1985 in response to increasing atmospheric CO₂ concentrations and decreasing atmospheric δ¹³C_a. To reduce the noise and enhance the climatic signals, we compared the polynomial function with the correction method developed by McCarroll and Loader (2004) to remove the low-frequency variation in the raw tree ring δ¹³C_p series (defined as the δ¹³C_poly series, δ¹³C_cor series, respectively), and found the most suited correction method was the correction method developed by McCarroll and Loader (2004) in our study area. High-frequency correlation analysis between the δ¹³C_cor series and many meteorological parameters recorded by Xian Rending weather station revealed that the current August–September mean maximum temperature and previous year mean minimum and mean maximum temperature (P < 0.005) most strongly influenced tree ring δ¹³C_p discrimination from 1956 to 1985, and the strongest temperature signal captured was the current August–September mean maximum temperature (r = 0.54, P < 0.005). Mainly on this basis, the varied history of current August–September mean maximum temperatures in the West Tianmu Mountain area were reconstructed from 1685 to 1985. The reconstructed maximum temperatures revealed a slight warming trend and showed close correlation with the climatic fluctuations of the Little Ice Age cold period before 1900 as well as the 20th century warm period after 1900. It also better corresponded with some climate events recorded in historical records. Spectrum analysis showed that in the reconstructed series there was quasi-periodicity of 66.7 yr, 21.1 yr, 3.2 yr, 2.3 yr and 2.0 yr. These cycles coincided with the “torque effect” variation of planets and the geocentric convergence, and changes in solar activity and irradiance, as well as the “Quasi-biennial oscillation” (QBO). This indicated that the δ¹³C_p chronology of tree rings in West Tianmu Mountain showed a good record of the sun's activities, the change in the sun radiation and ENSO events.     

Design,synthesis and evaluation of 2-amino-imidazol-4-one derivatives as potent β-site amyloid precursor protein cleaving enzyme 1 (BACE-1) inhibitors

Inhibition of β-site amyloid precursor protein cleaving enzyme 1 (BACE1) to prevent brain β-amyloid (Aβ) peptide’s formation is a potential effective approach to treat Alzheimer’s disease. In this report we described a structure-based optimization of a series of BACE1 inhibitors derived from an iminopyrimidinone scaffold W-41 (IC₅₀ = 7.1 μM) by Wyeth, which had good selectivity and brain permeability but low activity. The results showed that occupying the S₃ cavity of BACE1 enzyme could be an effective strategy to increase the biological activity, and five compounds exhibited stronger inhibitory activity and higher liposolubility than W-41, with L-5 was the most potent inhibitor against BACE1 (IC₅₀ = 0.12 μM, logP = 2.49).     

Semisynthesis,cytotoxicity, antimalarial evaluation and structure-activity relationship of two series of triterpene derivatives

In this report, we describe the semisynthesis of two series of ursolic and betulinic acid derivatives through designed by modifications at the C-3 and C-28 positions and demonstrate their antimalarial activity against chloroquine-resistant P. falciparum (W2 strain). Structural modifications at C-3 were more advantageous to antimalarial activity than simultaneous modifications at C-3 and C-28 positions. The ester derivative, 3β-butanoyl betulinic acid (7b), was the most active compound (IC₅₀?=?3.4?µM) and it did not exhibit cytotoxicity against VERO nor HepG2 cells (CC₅₀?>?400?µM), showing selectivity towards parasites (selectivity index?>?117.47). In combination with artemisinin, compound 7b showed an additive effect (CI?=?1.14). While docking analysis showed a possible interaction of 7b with the Plasmodium protease PfSUB1, with an optimum binding affinity of ?7.02?kcal/mol, the rather low inhibition displayed on a Bacillus licheniformis subtilisin A protease activity assay (IC₅₀?=?93?µM) and the observed accumulation of ring forms together with a delay of appearance of trophozoites in vitro suggests that the main target of 3β-butanoyl betulinic acid on Plasmodium may be related to other molecules and processes pertaining to the ring stage. Therefore, compound 7b is the most promising compound for further studies on antimalarial chemotherapy. The results obtained in this study provide suitable information about scaffolds to develop novel antimalarials from natural sources.     

Design,synthesis, and bioevaluation of benzamides: Novel acetylcholinesterase inhibitors with multi-functions on butylcholinesterase,Aβ aggregation,and β-secretase

Alzheimer’s disease (AD) is a multifactorial syndrome with several target proteins contributing to its etiology. In this study, we conducted a structure-based design and successfully produced a series of new multi-site AChE inhibitors with a novel framework. Compound 2e, characterized by a central benzamide moiety linked to an isoquinoline at one side and acetophenone at the other, was the most potent candidate with K_i of 6.47 nM against human AChE. Particularly, it showed simultaneous inhibitory effects against BChE, Aβ aggregation, and β-secretase. We therefore conclude that compound 2e is a very promising multi-function lead for the treatment of AD.     

Key regulatory elements of a strong constitutive promoter, P GCW14 , from Pichia pastoris

The promoter of the Pichia pastoris gene GCW14 is strong and constitutive when glycerol is the available carbon source. To identify the cis-acting elements of this promoter (P _GCW14 ), we constructed expression plasmids where the enhanced green fluorescent protein gene was fused to a series of mutants of P _GCW14 . We identified one negative (?114 to ?94) and three positive regulatory regions (?426 to ?152, ?134 to ?114, ?94 to ?77). The TATA box of P _GCW14 was located at ?48. One negative and four positive regulatory sites were identified combining error-prone PCR and directed mutation. The mutated promoter, M+20, with an increased promoter activity, was then used to express the gene for lipase B from Candida antarctica.     

Detection of nanosecond time scale side-chain jumps in a protein dissolved in water/glycerol solvent

In solution, the correlation time of the overall protein tumbling, τ _R , plays a role of a natural dynamics cutoff—internal motions with correlation times on the order of τ _R or longer cannot be reliably identified on the basis of spin relaxation data. It has been proposed some time ago that the ‘observation window’ of solution experiments can be expanded by changing the viscosity of solvent to raise the value of τ _R . To further explore this concept, we prepared a series of samples of α-spectrin SH3 domain in solvent with increasing concentration of glycerol. In addition to the conventional ¹⁵N labeling, the protein was labeled in the Val, Leu methyl positions (¹³CHD₂ on a deuterated background). The collected relaxation data were used in asymmetric fashion: backbone ¹⁵N relaxation rates were used to determine τ _R across the series of samples, while methyl ¹³C data were used to probe local dynamics (side-chain motions). In interpreting the results, it has been initially suggested that addition of glycerol leads only to increases in τ _R , whereas local motional parameters remain unchanged. Thus the data from multiple samples can be analyzed jointly, with τ _R playing the role of experimentally controlled variable. Based on this concept, the extended model-free model was constructed with the intent to capture the effect of ns time-scale rotameric jumps in valine and leucine side chains. Using this model, we made a positive identification of nanosecond dynamics in Val-23 where ns motions were already observed earlier. In several other cases, however, only tentative identification was possible. The lack of definitive results was due to the approximate character of the model—contrary to what has been assumed, addition of glycerol led to a gradual ‘stiffening’ of the protein. This and other observations also shed light on the interaction of the protein with glycerol, which is one of the naturally occurring osmoprotectants. In particular, it has been found that the overall protein tumbling is controlled by the bulk solvent, and not by a thin solvation layer which contains a higher proportion of water.     

A Phenomenological Theory of Muscular Contraction: II. Generalized Length Variations

In part I of this series, the theory of irreversible thermodynamics was applied to the sliding filament model to obtain rate equations for a contracting muscle at the in situ length l_o. In this paper we extend the theory to include length variations derived from the sliding filament model of contracting muscle using the work of Gordon, Huxley, and Julian (1). Accepting the validity of Hill's forcevelocity relation (2) at the in situ length, we show that Hill's equation is valid for any length provided that the values of the parameters, a, b, and V_m vary with length as derived herein. The predicted variation with length of the velocity for a lightly loaded isotonic contraction is shown to agree well with that measured by Gordon, Huxley, and Julian (1). Chemical rates are derived as functions of length using parameters that can be obtained experimentally.     

Practical considerations for measuring the effective reproductive number,Rt

Estimation of the effective reproductive number R_t is important for detecting changes in disease transmission over time. During the Coronavirus Disease 2019 (COVID-19) pandemic, policy makers and public health officials are using R_t to assess the effectiveness of interventions and to inform policy. However, estimation of R_t from available data presents several challenges, with critical implications for the interpretation of the course of the pandemic. The purpose of this document is to summarize these challenges, illustrate them with examples from synthetic data, and, where possible, make recommendations. For near real-time estimation of R_t, we recommend the approach of Cori and colleagues, which uses data from before time t and empirical estimates of the distribution of time between infections. Methods that require data from after time t, such as Wallinga and Teunis, are conceptually and methodologically less suited for near real-time estimation, but may be appropriate for retrospective analyses of how individuals infected at different time points contributed to the spread. We advise caution when using methods derived from the approach of Bettencourt and Ribeiro, as the resulting R_t estimates may be biased if the underlying structural assumptions are not met. Two key challenges common to all approaches are accurate specification of the generation interval and reconstruction of the time series of new infections from observations occurring long after the moment of transmission. Naive approaches for dealing with observation delays, such as subtracting delays sampled from a distribution, can introduce bias. We provide suggestions for how to mitigate this and other technical challenges and highlight open problems in R_t estimation.     

The generalization of directional visual stimuli in the honey bee, Apis mellifera

In transfer tests the ability of bees to generalize visual stimuli was tested by using differently inclined stripes and stripe patterns offered on a vertical screen. After having been trained to single stripes or equidistant stripe patterns, which were orientated by α₊ = 45° to the horizontal, the bees had to discriminate between the training direction α₊ and the competition direction α_c = 135° by means of special stripe configurations. These transfer patterns were obtained by varying different stimulus parameters of the original training stripes, for example by (1) reversing contrast between a stripe and the surrounding visual field, (2) changing the ratio of length/width and by this the dimensions of the stripe, and (3) inserting white intervals into the black stripes. In all three test series the bees succeeded in detecting the α₊-direction along a broad range of stimulus variations. As the bees in the transfer tests positively responded to patterns, which on the other side were significantly discriminated from the training pattern (control tests), the information about the direction of the visual cue had been transferred to a new pattern configuration never seen by the bees during the training situation.     

Design,synthesis, and evaluation of N-(4-(4-phenyl piperazin-1-yl)butyl)-4-(thiophen-3-yl)benzamides as selective dopamine D3 receptor ligands

As part of our on-going effort to explore the role of dopamine receptors in drug addiction and identify potential novel therapies for this condition, we have a identified a series of N-(4-(4-phenyl piperazin-1-yl)butyl)-4-(thiophen-3-yl)benzamide D₃ ligands. Members of this class are highly selective for D₃ versus D₂, and we have identified two compounds (13g and 13r) whose rat in vivo IV pharmacokinetic properties that indicate that they are suitable for assessment in in vivo efficacy models of substance use disorders.