Persistent leatherback turtle migrations present opportunities for conservation

Effective transboundary conservation of highly migratory marine animals requires international management cooperation as well as clear scientific information about habitat use by these species. Populations of leatherback turtles (Dermochelys coriacea) in the eastern Pacific have declined by >90% during the past two decades, primarily due to unsustainable egg harvest and fisheries bycatch mortality. While research and conservation efforts on nesting beaches are ongoing, relatively little is known about this population of leatherbacks' oceanic habitat use and migration pathways. We present the largest multi-year (2004-2005, 2005-2006, and 2007) satellite tracking dataset (12,095 cumulative satellite tracking days) collected for leatherback turtles. Forty-six females were electronically tagged during three field seasons at Playa Grande, Costa Rica, the largest extant nesting colony in the eastern Pacific. After completing nesting, the turtles headed southward, traversing the dynamic equatorial currents with rapid, directed movements. In contrast to the highly varied dispersal patterns seen in many other sea turtle populations, leatherbacks from Playa Grande traveled within a persistent migration corridor from Costa Rica, past the equator, and into the South Pacific Gyre, a vast, low-energy, low-productivity region. We describe the predictable effects of ocean currents on a leatherback migration corridor and characterize long-distance movements by the turtles in the eastern South Pacific. These data from high seas habitats will also elucidate potential areas for mitigating fisheries bycatch interactions. These findings directly inform existing multinational conservation frameworks and provide immediate regions in the migration corridor where conservation can be implemented. We identify high seas locations for focusing future conservation efforts within the leatherback dispersal zone in the South Pacific Gyre.     

A new species of fern, genus Danaea (Marattiales: Marattiaceae) endemic to Costa Rica

Danaea tuomistoana A. Rojas (Marattiaceae) is described and illustrated as a new species endemic to Costa Rica; it differs from D. crispa Endres et Richb. by a truncate blade, and by the pinnae, which are 2/5-1/2 incised, cuneated at the base and with a flat margin. The range of D. erecta H. Tuomisto & R.C. Moran in Costa Rica is expanded with a new locality in Puntarenas (8 degrees 57'15" N-82 degrees 50'1" W, 1,500-1,580 masl).     

Altitudinal gradients in stream fish diversity and the prevalence of diadromy in the Sixaola River basin,Costa Rica

Landscape-scale patterns of freshwater fish diversity and assemblage structure remain poorly documented in many areas of Central America, while aquatic ecosystems throughout the region have been impacted by habitat degradation and hydrologic alterations. Diadromous fishes may be especially vulnerable to these changes, but there is currently very little information available regarding their distribution and abundance in Central American river systems. We sampled small streams at 20 sites in the Sixaola River basin in southeastern Costa Rica to examine altitudinal variation in the diversity and species composition of stream fish assemblages, with a particular focus on diadromous species. A set of environmental variables was also measured in the study sites to evaluate how changes in fish assemblage structure were related to gradients in stream habitat. Overall, fish diversity and abundance declined steeply with increasing elevation, with very limited species turnover. The contribution of diadromous fishes to local species richness and abundance increased significantly with elevation, and diadromous species dominated assemblages at the highest elevation sites. Ordination of the sampling sites based on fish species composition generally arranged sites by elevation, but also showed some clustering based on geographic proximity. The dominant gradient in fish community structure was strongly correlated with an altitudinal habitat gradient identified through ordination of the environmental variables. The variation we observed in stream fish assemblages over relatively small spatial scales has significant conservation implications and highlights the ecological importance of longitudinal connectivity in Central American river systems.     

Structure of reef fish communities in Catalinas Islands and Ocotal beach, North Pacific of Costa Rica

The reefs are heterogeneous systems that maintain a high diversity of organisms. Fish community structure varies within and among reefs, so it would be expected that reef structure and heterogeneity should affect fish communities inhabiting reefs. Four reef patches at Catalinas Islands (Sur, La Pared, Roca Sucia and Sombrero) and one in Ocotal beach (10 degrees 28'45" N; 85 degrees 52'35" W) were studied with visual censuses (July-December 2003). The structure and composition of fishes between Catalinas islands and Ocotal beach were different, and habitat structure and composition explain most of the variance founded. The presence of the fleshy algae Caulerpa sertularioides in Ocotal, and the corals Tubastrea coccinea and Pocillopora spp. at Catalinas Island explained the variability among sites and how it affected fish community structure and composition. The butterfly fish Johnrandallia nigrirostris, damselfish Microspathodon dorsalis, and surgeon fish Prionurus punctatus were directly correlated with the ahermatipic coral Tubastrea coccinea in Roca Sucia reef, while the angel fish Holacanthus passer was associated to reefs with a major percentage of rocky substrate. Other species such as the damselfish Abudefduf troschelli and Halichoeres dispilus were more abundant at Ocotal, where the algae C sertularioides dominated. The number and abundance of reef fishes was directly correlated with the rugosity index at the reefs of Roca Sucia and Ocotal, but not at reefs of La Pared and Sombrero.     

Diversity of the free-living marine and freshwater Copepoda (Crustacea) in Costa Rica: a review

The studies on marine copepods of Costa Rica started in the 1990’s and focused on the largest coastal-estuarine systems in the country, particularly along the Pacific coast. Diversity is widely variable among these systems: 40 species have been recorded in the Culebra Bay influenced by upwelling, northern Pacific coast, only 12 in the Gulf of Nicoya estuarine system, and 38 in Golfo Dulce, an anoxic basin in the southern Pacific coast of the country. Freshwater environments of Costa Rica are known to harbor a moderate diversity of continental copepods (25 species), which includes 6 calanoids, 17 cyclopoids and only two harpacticoids. Of the +100 freshwater species recorded in Central America, six are known only from Costa Rica, and one appears to be endemic to this country. The freshwater copepod fauna of Costa Rica is clearly the best known in Central America. Overall, six of the 10 orders of Copepoda are reported from Costa Rica. A previous summary by 2001 of the free-living copepod diversity in the country included 80 marine species (67 pelagic, 13 benthic). By 2009, the number of marine species increased to 209: 164 from the Pacific (49% of the copepod fauna from the Eastern Tropical Pacific) and 45 from the Caribbean coast (8% of species known from the Caribbean Basin). Both the Caribbean and Pacific species lists are growing. Additional collections of copepods at Cocos Island, an oceanic island 530 km away of the Pacific coast, have revealed many new records, including five new marine species from Costa Rica. Currently, the known diversity of marine copepods of Costa Rica is still in development and represents up to 52.6% of the total marine microcrustaceans recorded in the country. Future sampling and taxonomic efforts in the marine habitats should emphasize oceanic environments including deep waters but also littoral communities. Several Costa Rican records of freshwater copepods are likely to represent undescribed species. Also, the biogeographic relevance of the inland copepod fauna of Costa Rica requires more detailed surveys.     

What can phylogeographic breaks in the livebearer Poeciliopsis turrubarensis tell about fish community boundaries in western Costa Rica?

This study asks if the geographic boundary delineating two fish communities in western Costa Rica is congruent with a phylogeographic break in a single widespread fish species Poeciliopsis turrubarensis (Poeciliidae) that spans this area. Such congruence would suggest that a common historical event (e.g. geological or climatic) could be responsible for both patterns. It was found that there was a shared break across a region in central Costa Rica suggesting a common cause may be responsible for both the abrupt shift in fish community composition and the genetic break in P. turrubarensis.     

Interdecadal trends in composition,density, size,and mean trophic level of fish species and guilds before and after coastal development in the Mexican Caribbean

This study explores the possible influence of human coastal development (before and after) and protected area status (within and outside a marine protected area, MPA) on composition, density, and maximum size of fish species and guilds, including mean trophic level of the fish community, in four localities of the Yucatan Peninsula, Mexican Caribbean. Reef fish density, maximum length, species composition, and trophic guilds were recorded by SCUBA belt transects and stationary points in fore reef and lagoon reef areas at decadal intervals (1995–1998, 2006–2010, 2014–2015). Mean density of most species and guilds decreased significantly through the years, as also did mean trophic level of the fish community. Some fish species increased in length. Fish density for many species was larger outside than inside the MPA in 1995–1998; however, the difference tended to disappear in the more recent decades, which reflects either a positive effect of the MPA, or a detrimental effect of coastal development in the non-protected area. Nevertheless, the overall negative trends suggest a regional or global rather than a local cause.     

Biogeography of the livebearing fish Poecilia gillii in Costa Rica: are phylogeographical breaks congruent with fish community boundaries?

One of the original goals of phylogeography was to use genetic data to identify historical events that might contribute to breaks among communities. In this study, we examine the phylogeography of a common livebearing fish ( Poecilia gillii ) from Costa Rica. Our goal was to determine if phylogeographical breaks in this species were congruent with previously defined boundaries among four fish community provinces. We hypothesized that if abiotic factors influence both community boundaries and genetic structuring in P. gillii then we might find four clades within our focal species that were geographically separated along community boundary lines. Similarly, we expected to find most of the genetic variation in P. gillii partitioned among these four geographical regions. We generated DNA sequence data (mitochondrial cytochrome b and nuclear S7 small ribosomal subunit) for 260 individuals from 42 populations distributed across Costa Rica. We analysed these data using phylogenetic (parsimony and likelihood) and coalescent approaches to estimate phylogenetic relationships among haplotypes, patterns of gene flow and effective population size . Contrary to our expectations, we did not find four monophyletic groups that mapped cleanly to our geographical community provinces. However, one of our clades was restricted to a single province, suggesting that common earth history events could be responsible for both genetic structuring in P. gillii and fish community composition in this area. However, our results show a complex pattern of gene flow throughout other regions in Costa Rica where genetic structuring is not predicted by community province boundaries.     

Identification of marine and coastal biodiversity conservation priorities in Costa Rica

Costa Rica is recognized as one of the most diverse countries in species and ecosystems, in their terrestrial realm as well as in the marine. Besides this relevance, the country presents a delay on conservation and management of marine and coastal biodiversity, with respect to terrestrial. For 2006, the marine protected surface was 5,208.8 km2, with 331.5 km of coastline, in 20 protected areas. The country has made progress on the conservation priority sites identification for terrestrial and freshwater biodiversity, with few efforts on marine planning. This research presents the analysis and results of the gap identification process, for marine and coastal biodiversity conservation in the protected areas system of Costa Rica. The analysis was built with the spatial information available on the presence and distribution of coastal and marine biodiversity, the establishment of the conservation goals and a threat analysis over the ecological integrity of this biodiversity. The selection of high-priority sites was carried out using spatial optimization techniques and the superposition over the current shape of marine protected areas, in order to identify representation gaps. A total of 19,076 km2 of conservation gaps were indentified, with 1,323 km2 in the Caribbean and 17,753 km2 in the Pacific. Recommendations are aimed at planning and strengthening the marine protected areas system, using the gaps identified as a framework. It is expected that the results of this study would be the scientific base needed for planning and sustainable use of marine biodiversity in the country.     

Theletrum lamothei sp. nov. (Digenea), parasite of Echidna nocturna from Cuajiniquil, Guanacaste, and other digenes of marine fishes from Costa Rica.

A new species of Theletrum is described from the intestine of two palenose morays, Echidna nocturna, collected in Cuajiniquil, Guanacaste Province, Costa Rica. The new species differs from the type species, T. fustiforme Linton, 1910 by having a subspherical pars prostatica, a subspherical seminal vesicle extending anteriorly to the anterior border of the acetabulum, by the presence of a poorly developed hermaphroditic sac, and by having a larger body size. We also report eight additional species of digeneans parasitizing marine fishes in several localities along the Atlantic and Pacific coast of Costa Rica: Bianium simonei, Didymozoinae (metacercariae), Ectenurus virgulus, Hypocreadium myohelicatum, Lecithochirium microstomum, Pseudolecithaster sp., Stephanostomum casum, and Tergestia laticollis. In addition, we present an updated list of helminth parasites of marine fish from Costa Rica and discuss the importance of including parasites as an integral part of biodiversity inventories.     

Composition, abundance and distribution of macrozooplankton in Culebra Bay, Gulf of Papagayo, Pacific coast of Costa Rica and its value as bioindicator of pollution

The abundance, distribution and composition of the macrozooplankton of Culebra Bay, Costa Rica (10 degrees 38' N - 85 degrees 40' W) were studied at four stations throughout the dry (February-May) and rainy (September-November) seasons of 2000. The samples were collected at two-week intervals using a 500 microm mesh net with a 0.5 m diameter opening. Copepods (23-31%) and ostracods (20-34%) were predominant throughout the year, followed by cladocerans (2.5-14%), zoea (6.6-9.5%), and siphonophores (2.5-7.2%). High densities of zooplankton were obtained in February and March with peak abundance on March 18. The lowest densities were observed on September 3 and November 5. Significant differences in abundances at each station were observed for the groups Acartia tonsa (Copepoda), Ctenophora, Medusae, Ostracoda, Zoea, and Amphipoda. Comparison of the dry and rainy seasons revealed significantly higher zooplankton abundance in the dry season and copepod domination of all stations; during the rainy season ostracods dominated the off-shore areas. Zooplankton abundance and distribution are influenced by upwelling, which occurs during the dry season in Culebra Bay.     

Temporal comparison of the composition and zonation of rocky intertidal organisms at Cocos Island National Park, Pacific, Costa Rica

Several biological and physical factors change the rocky shore communities. The desiccation time and the tolerance of the intertidal species produce the vertical zonation. In many studies around the world, a temporal change in this zonation is presented.In Costa Rica, only studies that include temporal trends were carried out in Punta Mala and Montezuma, Pacific coast in 80's. The rocky intertidal of the Cocos Island National Park, Costa Rica were surveyed photographically. The Chatham bay was sampled in three expeditions (January 2007, October 2007 and April 2008). Photos corresponding to 25x25cm quadrats were taken with the goal to determine diversity and composition differences in rocky shore organisms between sampling dates. The Wafer bay was sampled in January and October 2007. The intertidal of Chatham consists of basaltic rock, while Wafer has basaltic and ignimbrite boulders. The main difference between sites were the higher algae cover (erect-frondose forms) and number of organism bands at Chatham bay. Temporal change was not found in the total cover of sessile fauna and autotrophs. The barnacle Tetraclita stalactifera, that occurs above the algal fringe (lower intertidal), was the invertebrate with the highest coverage. The mobile fauna biodiversity presented no significant trend between sampled months. However, the identity of species, their cover and their abundance showed a moderate temporal change. In October 2007, when the sea surface temperature was 23 degrees C the infralittoral zone had an increase in green algae cover. The red algae (crust and erect-frondose forms) were dominant in January and April. The pulmonate limpet, Siphonaria gigas and a bacterial biofilm at mid littoral showed a negative association. The snails of the high littoral and the supralittoral zone showed a temporal change in their abundance, but with contrasting patterns between sites. The temporal variation in the assemblages increased from the supralittoral to the infralittoral possibly due to changes in the water temperature and climatic conditions, that could influence the intertidal zone during the high and low tide, respectively.     

Cryptogamic epiphytes in primary and recovering upper montane oak forests of Costa Rica – species richness,community composition and ecology

Species richness, community composition and ecology of cryptogamic epiphytes (bryophytes, macrolichens) were studied in upper montane primary, early secondary and late secondary oak forests of the Cordillera de Talamanca, Costa Rica. Canopy trees of Quercus copeyensis were sampled with the aim of getting insight in patterns and processes of epiphyte succession and recovery of diversity in secondary forest following forest clearing. Species richness of cryptogamic epiphytes in secondary and primary forests were nearly the same, showing that primary forests are not necessarily more diverse than secondary forests. High species richness of secondary forests was presumed due to the closed canopy, resulting in permanently high atmospheric humidity in these forests. Similarity in species composition of secondary and primary forests increases with forest age, but after 40 years of succession one third (46 species) of primary forest species had not re-established in the secondary forest. Community composition in primary and secondary forests differed markedly and indicates that a long time is needed for the re-establishment of microhabitats and re-invasion of species and communities adapted to differentiated niches. Genera and species exclusive to primary forests are relevant as indicator taxa and conservation targets. Forty percent (68 species) of all species recorded are restricted to secondary forests, indicating the important contribution of secondary forest diversity to total species richness of the oak forests of Costa Rica.     

Factors influencing fish distribution and community structure in a small coastal river in southwestern Costa Rica

We evaluated the relative importance of habitat size and diversity and distance from the ocean in explaining longitudinal patterns of fish distribution and community structure (species richness, evenness, and diversity) in the lower 5 km of the Rio Claro. The Rio Claro is a small coastal river in Corcovado National Park, southwestern Costa Rica, with a depauperate freshwater fish fauna. We observed 22 species in pools, 19 of which occured during quantitative sampling. Most of these species probably spent part of their lives in the Pacific Ocean. We observed no species in riffles, although these habitats were common and several taxa (e.g., Gobiesocidae, Gobiidae) were adapted for life in fast turbulent water. Fish abundance, and species richness, evenness, and diversity were highest near the ocean, where high tides influenced river levels and salinity. Eight species were not observed further than 2900 m from the ocean, whereas 6 species were not encountered in samples nearest the ocean; the remaining 8 species were present throughout the study area. Distance from the ocean was a better predictor of fish abundance and community structure than were pool width, pool depth, pool surface area, pool volume, amount of cover present, substrate diversity, or depth diversity. Based in qualitative comparisons of our data with previously published data from 1980–1986, the fish assemblage of the Rio Claro is persistent in both species composition and relative abundance.     

Diversity, natural history and conservation of mammals from San Vito de Coto Brus, Costa Rica

Although Costa Rica has been biologically well studied, few areas have complete mammal inventories, which are essential for ecological studies and conservation. The San Vito region is considered among the most important for scientific research in the country because of the presence of the Wilson Botanical Garden and Las Cruces. However, the knowledge of its mammalian fauna is incomplete. We extensively studied the mammals of San Vito, compiled a checklist, and evaluated its composition, relative abundance, habitat distribution, and conservation status. We recorded 105 species, representing 85 genera, 29 families, and 10 orders. Non-volant mammals represented 62 species, 59 genera, 23 families, and 9 orders. Bats belonged to 6 families, 26 genera and 43 species. The extensive deforestation and hunting have caused the extinction of seven species, but the region still supports, surprisingly, a relatively high number of species, most of which are rare. Few species are common and abundant. Species richness was higher in forest, and forest fragments; fewer species were found in coffee plantations, induced grasslands, and secondary vegetation. Around 21% (13 species) are included in the IUCN red book. Three species are considered endangered (Saimiri oerstedii, Tapirus bairdii, and Sylvilagus dicei), and two threatened (Myrmecophaga trydactila and Caluromys derbianus), of which two (T. bairdii and M. trydactila) are locally extinct. The other species in IUCN are either of low risk (i.e. Chironectes minimus) or data deficient (Lontra longicaudis). Additionally, 24 species (39%) are included in CITES.     

长江口水域鱼卵、仔稚鱼种类组成和数量的分布与变化

根据2005年4和11月、2006年4和9月在长江河口水域进行的鱼卵、仔稚鱼种类和数量调查,并结合1990年9月和1991年3月的历史数据,对该水域的鱼卵、仔稚鱼群落结构的种类组成和数量的季节变化作了研究,其结果共发现鱼卵、仔稚鱼36种(类),以海洋鱼类种类最多。秋季航次鱼卵、仔稚鱼的平均种类数和丰度均高于春季。河口咸淡水区鱼卵总数显著高于淡水区,而仔稚鱼总数略低于淡水区。与1990—1991年数据相比,2005—2006年春、秋季的鱼卵和仔稚鱼丰度均有所增加。1990、2006年秋季(9月)鱼卵、仔稚鱼种类组成差异较大,特别是翘嘴红鲌和太湖新银鱼丰度差异较大。这些都说明近20年来,长江河口水域鱼卵、仔稚鱼种类组成和数量均发生了明显的改变。     

Mollusks of Manuel Antonio National Park, Pacific Costa Rica

The mollusks in Manuel Antonio National Park on the central section of the Pacific coast of Costa Rica were studied along thirty-six transects done perpendicular to the shore, and by random sampling of subtidal environments, beaches and mangrove forest. Seventy-four species of mollusks belonging to three classes and 40 families were found: 63 gastropods, 9 bivalves and 2 chitons, during this study in 1995. Of these, 16 species were found only as empty shells (11) or inhabited by hermit crabs (5). Forty-eight species were found at only one locality. Half the species were found at one site, Puerto Escondido. The most diverse habitat was the low rocky intertidal zone. Nodilittorina modesta was present in 34 transects and Nerita scabricosta in 30. Nodilittorina aspera had the highest density of mollusks in the transects. Only four transects did not clustered into the four main groups. The species composition of one cluster of transects is associated with a boulder substrate, while another cluster of transects associates with site. Two clusters were not associated to any of the factors recorded. Some species were present in previous studies but absent in 1995, while others were absent in the previous studies but found in 1995. For example, Siphonaria gigas was present in 1995 in many transects with a relatively high density, but absent in 1962, probably due to human predation before the establishment of the park. Including this study, a total of 97 species of mollusks in three classes and 45 families have been reported from Manuel Antonio National Park. Sixty-nine species are new reports for the area: 53 gastropods, 14 bivalves and 2 chitons. There are probably more species of mollusks at Manuel Antonio National Park, than the 97 reported here, because some areas have not been adequately sampled (e.g., deep environments) and many micro-mollusks could not be identified.     

Digenetic trematode community in nesting green sea turtles (Chelonia mydas) from Tortuguero National Park, Costa Rica

The digenetic community of 40 green sea turtles (Chelonia mydas) was investigated at Tortuguero National Park, Costa Rica. In total, 24,270 trematodes belonging to 29 species and 6 families including Clinostomidae 1, Microscaphidiidae 5, Paramphistomidae 2, Pronocephalidae 15, Rhytidodidae 2, and Spirorchiidae 4 were recorded from chelonians examined. Turtles harbored a mean of 7.63 +/- 3.5 SD species. Only 3 species, i.e., Learedius learedi, Microscaphidium reticulare, and Pyelosomum cochlear, infected more than 50% of the hosts sampled. Learedius learedi was the most prevalent (97.5%) and the second most abundant species with a mean of 25.6 +/- 21.6 SD. Only 1 core species, M. reticulare, was recovered from the gastrointestinal tract; it was the most abundant parasite, with a mean intensity of 477 +/- 1,180 SD, and the second most prevalent (77.5%). Diversity values ranged from 0.10 to 2.10, with a mean of 1.00 +/- 0.43 SD for the total component community and from 0.10 to 1.84, with a mean of 0.79 +/- 0.41 SD, for the gastrointestinal component community. Species richness was the highest recorded from a sea turtle species. All digenetic species were recorded from Costa Rica for the first time. This represents the first report on the helminth community of the green turtle.     

Study of the diversity of culturable actinomycetes in the North Pacific and Caribbean coasts of Costa Rica

In this study, 137 actinomycetes were isolated from subtidal marine sediments in the North Pacific and Caribbean coasts of Costa Rica. Bioinformatics analysis of the 16S rRNA gene sequences assigned the isolates to 15 families and 21 genera. Streptomyces was the dominant genus while the remaining 20 genera were poorly represented. Nearly 70% of the phylotypes presented a coastal-restricted distribution whereas the other 30% were common inhabitants of both shores. The coastal tropical waters of Costa Rica showed a high diversity of actinomycetes, both in terms of the number of species and phylogenetic composition, although significant differences were observed between and within shores. The observed pattern of species distribution might be the result of several factors including the characteristics of the ecosystems, presence of endemic species and the influence of terrestrial runoff. Electronic supplementary material  The online version of this article (doi:) contains supplementary material, which is available to authorized users.