Seeing the forest beyond the trees

In a recent paper (Mitchard et al. 2014, Global Ecology and Biogeography, 23 , 935–946) a new map of forest biomass based on a geostatistical model of field data for the Amazon (and surrounding forests) was presented and contrasted with two earlier maps based on remote‐sensing data Saatchi et al. (2011; RS1) and Baccini et al. (2012; RS2). Mitchard et al. concluded that both the earlier remote‐sensing based maps were incorrect because they did not conform to Mitchard et al. interpretation of the field‐based results. In making their case, however, they misrepresented the fundamental nature of primary field and remote‐sensing data and committed critical errors in their assumptions about the accuracy of research plots, the interpolation methodology and the statistical analysis. By ignoring the large uncertainty associated with ground estimates of biomass and the significant under‐sampling and spatial bias of research plots, Mitchard et al. reported erroneous trends and artificial patterns of biomass over Amazonia. Because of these misrepresentations and methodological flaws, we find their critique of the satellite‐derived maps to be invalid.     

Seeing the trees in the forest: selective electroporation of adipocytes within adipose tissue

Electroporation has been recently adapted for the transfer of macromolecules into cells of tissues in vivo. Although mature adipocytes constitute <20% of cells residing in adipose tissue, we hypothesized that fat cells might be susceptible to selective electrotransfer of plasmid DNA owing to their large size relative to other cells in the tissue. Results demonstrate the feasibility of electroporating DNA into mature fat cells with >99% selectivity over other cells in the tissue. Further experiments used the "adiporation" technique to image the subcellular targeting of fluorescent bioreporter molecules to the nucleus, mitochondria, and lipid droplets of adipocytes within intact adipose tissue. Finally, we utilized fluorescent bioreporters to examine the effects of constitutive activation of the beta-adrenergic signaling pathway in adipocytes. These results demonstrate that overexpression of rat beta1-adrenergic receptors alters the cellular morphology of white adipocytes in a fashion that mimics the effects of systemic infusion of beta3-adrenergic receptor agonists. Hallmarks of the altered morphology include pronounced fragmentation of the single lipid droplet, repositioning of the nucleus, and induction of mitochondrial biogenesis. These results indicate that activation of beta-adrenergic signaling within adipocytes is sufficient to induce a phenotype that resembles typical brown adipocytes and suggest that in vivo electroporation will allow molecular dissection of the mechanisms involved.     

Seeing the forest for the trees: New approaches and challenges for dendroarchaeology in the 21st century

The application of tree-ring research to the study of cultural heritage has seen important conceptual and methodological developments in the 21 st century. Following the breakthrough discovery in the 1980s of the importation of timber from the south-eastern Baltic to the Low Countries for panel paintings, the historical timber trade acquired paramount relevance in European dendrochronology. The improvement of methods and tools to locate the area of origin of the wood has since become a focal line of research. Reference chronologies of different variables (ring width, earlywood, latewood, earlywood vessel size in oak, latewood density in conifers, stable isotope chronologies of δ¹³C, δ¹⁸O) are now being developed in areas formerly (and currently) exploited for timber production, and isotopic signatures of ⁸⁷Sr/⁸⁶Sr are being mapped to provide a geochemical reference. In parallel, novel techniques to identify wood species (automated wood identification, chemical biomarkers, DNA barcoding) and their application on historical and ancient wood are being explored, given that this could sometimes help narrow down the timber source area. Modern technology is playing a key role in the study of wooden objects through non-invasive methods, and collaboration with (art) historians, mathematicians, engineers and conservators has proven essential in current achievements. Tree-ring series can now be retrieved from high resolution X-ray computed tomography images, allowing the research of otherwise inaccessible pieces. This paper reviews recent advances in those fields (tree-ring based dendroprovenancing, wood species identification, chemical fingerprinting, use of genetic markers, isotopic signatures, and non-invasive methods), and discusses their implementation and challenges in dendroarchaeological studies.     

Seeing the forest for the trees: partitioning ecological and phylogenetic components of Bergmann's rule in European Carnivora

Comparative methods have commonly been applied in macroecological research. However, few methods exist to map and analyze phylogenetic variation in geographical space. Here we develop a general analytical framework to partition the phylogenetic and ecological structures of macroecological patterns in geographic space. As an example, we apply the framework to evaluate interspecific patterns of body size geographic variation (Bergmann's rule) in European Carnivora. We model the components of variance attributable to ecological and phylogenetic effects, and to the shared influence of both factors. Spatial patterns in the ecological component are stronger than those in the original body size data. More importantly, the magnitude of intraspecific body size patterns (as measured by the correlation coefficient between body size and latitude) is significantly correlated with the ecological component across species, providing a unified interpretation for Bergmann's rule at multiple levels of biological hierarchy. This approach provides a better understanding of patterns in macroecological traits and allows improved understanding of their underlying ecological and evolutionary mechanisms.     

Fungicides for forest trees,shade trees and forest products

The Botanical Review -     

Biotechnology and the domestication of forest trees

Wood is one of the major renewable materials. To compensate for the ever-increasing demand for wood and to reduce pressure on native forests, more wood of higher quality will need to be produced on less land by planting highly productive trees. Biotechnology has shown great promise for forest tree improvement and over the past 10 years this field has flourished. Not only has the potential of transgenic trees with optimized yield and quality traits been demonstrated in field trials, but progress in genetical genomics and association genetics promise quantum leaps forward for tree improvement.     

Seeing the forest for the trees: the limitations of phylogenies in comparative biology. (American Society of Naturalists Address)

The past 30 years have seen a revolution in comparative biology. Before that time, systematics was not at the forefront of the biological sciences, and few scientists considered phylogenetic relationships when investigating evolutionary questions. By contrast, systematic biology is now one of the most vigorous disciplines in biology, and the use of phylogenies not only is requisite in macroevolutionary studies but also has been applied to a wide range of topics and fields that no one could possibly have envisioned 30 years ago. My message is simple: phylogenies are fundamental to comparative biology, but they are not the be-all and end-all. Phylogenies are powerful tools for understanding the past, but like any tool, they have their limitations. In addition, phylogenies are much more informative about pattern than they are about process. The best way to fully understand the past-both pattern and process-is to integrate phylogenies with other types of historical data as well as with direct studies of evolutionary process.     

Seeing the forest for the trees: long-term exposure to elevated CO2 increases some herbivore densities

The effects of elevated CO₂ on plant growth and insect herbivory have been frequently investigated over the past 20 years. Most studies have shown an increase in plant growth, a decrease in plant nitrogen concentration, an increase in plant secondary metabolites and a decrease in herbivory. However, such studies have generally overlooked the fact that increases in plant production could cause increases of herbivores per unit area of habitat. Our study investigated leaf production, herbivory levels and herbivore abundance per unit area of leaf litter in a scrub‐oak system at Kennedy Space Center, Florida, under conditions of ambient and elevated CO₂, over an 11‐year period, from 1996 to 2007. In every year, herbivory, that is leafminer and leaftier abundance per 200 leaves, was lower under elevated CO₂ than ambient CO₂ for each of three species of oaks, Quercus myrtifolia, Quercus chapmanii and Quercus geminata. However, leaf litter production per 0.1143 m² was greater under elevated CO₂ than ambient CO₂ for Q. myrtifolia and Q. chapmanii, and this difference increased over the 11 years of the study. Leaf production of Q. geminata under elevated CO₂ did not increase. Leafminer densities per 0.1143 m² of litterfall for Q. myrtifolia and Q. chapmanii were initially lower under elevated CO₂. However, shortly after canopy closure in 2001, leafminer densities per 0.1143 m² of litter fall became higher under elevated CO₂ and remained higher for the remainder of the experiment. Leaftier densities per 0.1143 m² were also higher under elevated CO₂ for Q. myrtifolia and Q. chapmanii over the last 6 years of the experiment. There were no differences in leafminer or leaftier densities per 0.1143 m² of litter for Q. geminata. These results show three phenomena. First, they show that elevated CO₂ decreases herbivory on all oak species in the Florida scrub‐oak system. Second, despite lower numbers of herbivores per 200 leaves in elevated CO₂, increased leaf production resulted in higher herbivore densities per unit area of leaf litter for two oak species. Third, they corroborate other studies which suggest that the effects of elevated CO₂ on herbivores are species specific, meaning they depend on the particular plant species involved. Two oak species showed increases in leaf production and herbivore densities per 0.1143 m² in elevated CO₂ over time while another oak species did not. Our results point to a future world of elevated CO₂ where, despite lower plant herbivory, some insect herbivores may become more common.     

Geographical genetics and the conservation of forest trees

Trees are key ecosystem engineers. Many analyses of the genetic diversity of forest trees over substantial parts of their distributional ranges are appearing. These studies are of relevance for forest and landscape management, the inventory of botanical genetic resources and the conservation biology of rare, endemic, relictual, and endangered tree species. This review focuses on (i) recent investigations of the influence of human disturbances, (ii) comparative analyses of closely related and hybridizing species, (iii) reconstructions of refugia and of the spread of tree populations during the postglacial, (iv) studies of both range-wide and range-edge genetic patterns, and (v) assessments of the role of tree genetic diversity in the face of future climate warming. There is a need to include more tropical and austral trees in genetic analyses, as most studies have dealt with the relatively species-poor Palaearctic and Nearctic regions. Further studies are also needed on the role of tree genetic diversity in variations in phenology, resistance to insect defoliators and fungal pathogens, reactions to increased CO₂ and ozone concentrations, growth, mortality rates and other traits. Most macroecological and scaling patterns of species richness still need to be studied for genetic diversity. Open research questions in this rapidly evolving field involve invasion biology, island biogeography, and urban ecology. There is a need for more knowledge transfer from the many studies of tree genetic diversity to the day-to-day management of trees and forests.     

Seeing the forest through the trees: comprehensive inference on individual mating patterns in a mixed stand of Quercus robur and Q. petraea

Background and Aims

Sexual reproduction is one of the most important moments in a life cycle, determining the genetic composition of individual offspring. Controlled pollination experiments often show high variation in the mating system at the individual level, suggesting a persistence of individual variation in natural populations. Individual variation in mating patterns may have significant adaptive implications for a population and for the entire species. Nevertheless, field data rarely address individual differences in mating patterns, focusing rather on averages. This study aimed to quantify individual variation in the different components of mating patterns.

Methods

Microsatellite data were used from 421 adult trees and 1911 seeds, structured in 72 half-sib families collected in a single mixed stand of Quercus robur and Q. petraea in northern Poland. Using a Bayesian approach, mating patterns were investigated, taking into account pollen dispersal, male fecundity, possible hybridization and heterogeneity in immigrant pollen pools.

Key Results

Pollen dispersal followed a heavy-tailed distribution (283 m on average). In spite of high pollen mobility, immigrant pollen pools showed strong genetic structuring among mothers. At the individual level, immigrant pollen pools showed highly variable divergence rates, revealing that sources of immigrant pollen can vary greatly among particular trees. Within the stand, the distribution of male fecundity appeared highly skewed, with a small number of dominant males, resulting in a ratio of census to effective density of pollen donors of 5·3. Male fecundity was not correlated with tree diameter but showed strong cline-like spatial variation. This pattern can be attributed to environmental variation. Quercus petraea revealed a greater preference (74 %) towards intraspecific mating than Q. robur (36 %), although mating preferences varied among trees.

Conclusions

Mating patterns can reveal great variation among individuals, even within a single even-age stand. The results show that trees can mate assortatively, with little respect for spatial proximity. Such selective mating may be a result of variable combining compatibility among trees due to genetic and/or environmental factors.