The zygosity in the human HL-A transplantation system

Summary If by serological methods of tissue typing one antigen only is detected in one or both of the loci LA and 4 of the histocompatibility system HL-A, the question arises whether it is homozygous or heterozygous. The probability thereof is calculated. It depends on the frequency of the known and unknown genes in the HL-A-system. If e.g. the HL-A type of an examinee is 1,3,8 this subject could be homozygous 1,3,8,8 or heterozygous (with an unknown antigen X) 1,3,8,X. The frequencies of homozygous and heterozygous individuals are calculated in all possible combinations of the LA and 4 loci. The results justify always for both the LA-and 4 locus the assumption of heterozygosity, with the one exception that the gene HL-A 2 is under consideration. There the calculations result in a value of 49% for homozygosity (2,2) and 51% for heterozygosity (2,X). Neither alternative is in this case essentially more probable.For transplantations generally heterozygosity can be assumed — with the exception of HL-A 2 — and therefore the minor grade of histocompatibility.National Blood Group Reference Laboratory — WHO (Director: Prof. Dr. P. Speiser)     

HL-A frequencies in Down's syndrome.

HL-A antigen frequencies were examined in 76 Down's syndrome individuals and 733 normal Caucasians. 10 antigens of the first locus and 15 antigens of the second locus were defined, using a microlymphocytotoxicity technique. No significant differences were observed between the normal and Down's syndrome samples, in contrast to a previous report (Boxer and Yokoyama, 1972) of decreased HL-A antigen frequencies in Down's syndrome individuals. Our results therefore suggest that there is no relationship between trisomy 21-associated immune aberrations and altered HL-A antigen frequencies.     

HL-A antigens in North American black families

The polymorphic HL-A histocompatibility system has been studied in North American black families. The family studies show that haplotype frequencies differ between black and white populations. Seven haplotypes (W28,W5; W28,W17; W28, undefined four; W23,W5; W19,W5; undefined LA,W5; and undefined LA, undefined four) were significantly more frequent in blacks than whites, while haplotypes 1,8 and 3,7 were significantly less frequent. Some of these differences may be accounted for by differences in gene frequencies between the two groups; other differences may be explained by linkage disequilibrium in the white population. No significant linkage disequilibrium between the LA and FOUR loci was found in the black population.     

Evidence for HL-A-linked genes in "juvenile" diabetes mellitus.

HL-A typing of 150 patients who had developed diabetes mellitus by the age of 30 years showed a significant association with HL-A 8 and W 15. The HL-A genotypes were determined in 17 families in which two or more siblings had this type of diabetes. The zygotic assortment of HL-A haplotypes was found to be significantly disturbed from the expected random pattern, with a reduction in the number of siblings showing no identical haplotypes and an appreciable increase in the number with both haplotypes identical. This appears to be most consistent with the presence of a gene or genes pre-disposing to this type of diabetes at a locus closely linked to the HL-A chromosomal loci. This locus appears to have a fundamental role in the susceptibility to juvenile diabetes.     

GnRHR gene polymorphisms and their effects on reproductive performance in Chinese goats

In this study, polymorphisms in the goat GnRHR gene exon 1 were detected by PCR-SSCP and DNA sequencing methods in 786 individuals from two different goat breeds. Two haplotypes (A and B), two observed genotypes (AA and AB), and two single nucleotide polymorphisms (SNPs) were detected, which resulted in five amino acid substitutions. The frequencies of haplotypes A and B in the two goat breeds were 0.78–0.83 and 0.17–0.22, respectively. The SNP locus was in Hardy–Weinberg disequilibrium in the two goat breeds (P < 0.05). Polymorphisms of the GnRHR gene were shown to be associated with litter size in the two goat breeds. The SNPs in the goat GnRHR gene had significant effects on litter size (P < 0.05). Therefore, these results suggest that the GnRHR gene is a strong candidate gene that affects litter size in goat.     

The polymorphism of a novel 30 bp-deletion mutation at KAP9.2 locus in the cashmere goat

The keratins and keratin-associated proteins (KAPs) are a large heterogeneous group of proteins that make up about 90% of the cashmere fiber. Keratin-associated proteins 9.2 gene (KAP9.2) is one of the ultra high sulfur KAPs, which might play an important role in the bundling of intermediate filaments. In this study, the deletion/insertion mutation of KAP9.2 gene in 997 cashmere goat samples was firstly detected, at the same time, parts of these samples were sequenced. The results showed that two alleles were detected at this KAP9.2P1 locus, named allele W and D. The frequencies of the KAP9.2-W allele in Inner Mongolia White cashmere (n = 785) and Shaanbei White cashmere goat breeds (n = 212) were 0.878 and 0.790, respectively. The χ²-test showed that the genotype distributions in these two cashmere goat breeds were not in agreement with Hardy–Weinberg equilibrium. According to the classification of polymorphism information content (PIC), Shaanbei White cashmere goat was more polymorphic at this locus. Moreover a 30 bp-deletion mutation was described at KAP9.2P2 locus for the first time and no deletion/insertion was described at KAP9.2P1 locus. The results possibly revealed that the size polymorphism existed in the two Chinese cashmere goat and the 30 bp-deletion mutation was possibly caused by variations in the number of the decapeptide repeat structures.     

Transfer of plasmids and chromosomal genes amongst subspecies ofBacillus thuringiensis

Summary The plasmids pBC16 and pC194 fromBacilus thuringiensis subsp.israelensis strains A084-16-194 were transferred to 25 subspecies ofB. thuringiensis by a conjugation-like process using broth mating technique. The frequencies of transfer varied considerably between different mating pairs, ranging from 1.1×10^–9 to 9.8×10^–5. Additionally, chromosomal transfer could also be demonstrated in tenB. thuringiensis subspecies with very low frequencies (4.3×10^–9 to 3.7×10^–7). The intersubspecies matings within a group of eight subspecies strains gave higher frequencies of transfer than the matings between the subspecies. Furthermore, the results indicated that the capability to transfer plasmids among these various subspecies did not depend on the presence of large plasmid.     

Regeneration of multiple shoots and plants from Mesembryanthemum crystallinum

Mesembryanthemum crystallinum plants have been regenerated via organogenesis from hypocotyl, cotyledonary node, and leaf expiants with varying frequencies. The highest regeneration frequencies were obtained from either hypocotyls (23–34%) or cotyledonary nodes (21–41%). Leaf expiants yielded very poor regeneration frequencies (0–11%). Expiants were placed on Murashige and Skoog (MS) media supplemented with 3% sucrose, 0.8% bacto-agar and either, 10.8×10^–6M NAA and 8.8×10^–6M BA (MSmsh), 1×10^–5M BA and 1×10^–6M IAA, (MS4) or 1×10^–6M BA and 1×10^–6M IAA (MS5). Shoot formation frequencies were greater on MS4 and MS5 and lower on MSmsh, however, overall differences of regeneration frequency among media tested were not statistically significant. Regenerated plantlets were rooted on MS medium without growth regulators. Mature, regenerated plants were fertile and exhibited DNA content and ploidy profiles that were identical to wild type plants.Abbreviations MS Murashige and Skoog media - CAM Crassulacean acid metabolism - kbp kilobase pairs - NAA 1-naphthaleneacetic acid - BA 6-benzyladenine - IAA indole-3-acetic acid     

Grid-generated turbulence in a mesocosm experiment

In two mesocosm experiments designed to study the effect of nutrients and turbulence on trophic levels below fish larvae in the ecosystem, turbulence was created by oscillating grids. Utilizing two different frequencies, two levels of turbulence (`high' and `low') were generated in a total of eight mesocosms in both experiments. In each mesocosm a two-layer density structure was created. We succeeded in generating turbulence that mimics turbulence found in natural ecosystems, with turbulent eddies on larger scales than those relevant for organism interactions. Energy dissipation rates () were calculated from the frequency spectrums of the measured turbulent velocities. In the second experiment the average energy dissipation rates in the upper layer were 1.9×10^–7 W kg^–1 and 5.5×10^–8 W kg^–1 in the `high' and `low' enclosures, respectively. Finding `background' turbulence levels between 5.3×10^–9 and 3×10 ^–8 W kg^–1, we suggest that future experiments consider turbulent measurements as a standard variable.     

Purification and characterization of HL-A antigens from human platelets, solubilized by the non-ionic detergent NP-40

Soluble HL-A antigens can be extracted with high yields from whole human platelets or platelet membrane preparations by the non-ionic detergent NP-40. The active molecules have high molecular weights ( 200 000) and the HL-A specificities present in the preparation were not separated by electrofocusing. An increase of the detergent/protein ratio gives rise to active molecules with lower molecular weight (15 000–30 000). In this case the two specificities studied (HL-A2 and HL-A7) could be separated by electrofocusing.     

Phenotype and gene frequencies of acid phosphatase (s-AcP) in the human parotid saliva

Summary Genetic polymorphism of the human parotid salivary acid phosphatase (s-AcP) in the Japanese population is described. The use of polyacrylamide gel isoelectric focusing electrophoresis with the pH range of 4.0–6.5 enabled us to discern three variant patterns controlled by two codominant alleles at the single autosomal locus. The two alleles were designated s-AcP: A and s-AcP:a, and the gene frequencies calculated from 183 Japanese subjects were s-AcP:A=0.2268±0.022, s-AcP:a=0.7732±0.022, respectively. The distribution of phenotypes fitted the Hardy-Weinberg equilibrium.     

Electrophysiological characterization of the multipolar thermoreceptors in the "fire-beetle" Merimna atrata and comparison with the infrared sensilla of Melanophila acuminata (both Coleoptera,Buprestidae)

A thermosensitive multipolar neuron innervates each of the four abdominal receptors of the Australian buprestid beetle Merimna atrata. The neuron is spontaneously active within a broad range of body temperatures (tested between 10°C and 40°C). We heated the receptors with a red diode laser (=0.66 µm) at intensities ranging from 5.3 mW cm^–2 up to 1.3 W cm^–2. In general, warming caused an increase of receptor activity. Peak discharge frequencies were reached 100–300 ms after onset of irradiation. After peak frequencies were reached, distinct adaptation took place within seconds. A linear increase in irradiation intensity caused an exponential increase in peak frequencies. Lowest threshold was found to be at 40 mW cm^–2 where latencies were 47 ms. At the highest intensity tested (1.3 W cm^–2), peak frequencies increased up to about 300 Hz and latencies decreased to 24 ms. Considering the pyrophilous behaviour of Merimna and the morphological data from previous studies, our results support the hypothesis that the abdominal receptors are infrared receptors. We also recorded the responses of the photomechanic infrared sensilla of Melanophila acuminata under the same experimental conditions. These results show that the photomechanic sensillum of Melanophila has a higher sensitivity, and that the latencies are considerably shorter.     

Development and characterization of microsatellite markers in <Emphasis Type="Italic">Castanea sativa</Emphasis> (Mill.)

Thirty-three simple sequence repeat (SSR) markers were isolated andcharacterized in Castanea sativa (Mill.) from the cultivarGarrone Nero. For the identification of SSR loci, primers were designed on eachside flanking the repeat region and they were initially tested on 5 chestnutsamples using chemiluminescence detection. Twenty four loci where shown to bepolymorphic and the number of alleles detected per locus varied from 2 to 7.Fourteen loci were chosen for the analysis of 20 cultivars grown in North Italyusing the semi-automatic system ABI PRISM 377. These 14 markers showed a highlevel of genetic polymorphism with a total of 90 alleles; the number of allelesranged from 4 to 10 per locus, with an average level of 6.4. The mean expectedand observed heterozygosity were 0.724 (range: 0.649–0.835) and 0.793(range: 0.350–0.950) respectively. The estimated frequency of nullallelesshowed a positive value for 3 loci, but except for 1 locus, the values wereverylow. The total value for the probability of identity was 7.04 ×10^–11. Paternity exclusion probability was very high (0.999),sufficiently high to study pollen flow.     

Occupancy of the majority of DNA in the chicken W chromosome by bent-repetitive sequences

Another family of repetitive sequences, designated the EcoRI family, was found in the DNA of the chicken W chromosome by hybridization with the W chromosome-specific XhoI family probe under conditions of low stringency. A 1.2 kb EcoRI fragment, the major repeating unit of the family, was cloned and sequenced. The 1.2 kb unit showed an overall sequence similarity of about 68% to the 0.7 kb XhoI family repeating unit and it consisted of tandem repeats of average length 21 bp, most of which contained (A)_3–5 and (T)_3–4 clusters separated by 6–8 G+C-rich sequences. These features and its behavior as a strongly bent molecule in solution were very similar to those found for other W chromosome-specific repetitive sequences in the order Galliformes: XhoI family of chicken, PstI family of turkey and TaqI family of pheasant. The cloned 1.2 kb unit contained 78 CpG dinucleotide sequences and those that were in HapII, HhaI and BstUI sites were shown to be extensively methylated in the genomic DNA. Repetition frequencies of the 1.2 kb unit among the female population of chicken fell into high- and low-level classes, which accounted for about 30% and 10%, respectively, of the DNa in the W chromosome. Thus, 70% to 90% of the DNA in the chicken W chromosome was shown to be occupied by bent-repetitive sequences. The EcoRI and XhoI family sequences were not intermingled over the short range but each family formed a unique domain ranging from one to several million base pairs.by H.C. Macgregor     

Batch cultures of recombinant Lactococcus lactis subsp. lactis in a stirred fermentor

Summary The transfer of plasmids was studied in a stirred fermentor in the course of mixed batch cultures combining recombinant strains of Lactococcus lactis subsp. lactis (donor strains) with L. lactis subsp. lactis CNRZ 268M3 (recipient strain). Donor strains contained one or two of the following plasmids (coding for erythromycin or chloramphenicol resistance): pIL205 (self-transmissible), pIL252, pIL253 (non-transmissible but mobilizable by pIL205, respectively small and large copy number) and pE194 (inserted in the chromosome). Only self-transmissible plasmid pIL205 was transferred, with frequencies ranging from 10^–7 to 10^–8 after 12 h of fermentation. These frequencies were 60–400 times lower than in unstirred M17 broth and 100 000 times lower than on agar medium. In the latter case, non-transmissible plasmids pIL252 and pIL253 were mobilized by pIL205 with a frequency of about 10^–5–10^–6. Correspondence to: C.-Y. Boquien     

HL-A population studies in 445 individuals from Hamburg,respecting 8 LA and 15 Four-antigens including U 18 (W 16) and CM (W 18)

Summary By means of 8 LA (HL-A1, HL-A2, HL-A3, HL-A9, HL-A10, HL-A11, Ba^*, Li) and 15 Four-antisera specificities (HL-A5, HL-A7, HL-A8, HL-A12, HL-A13, R^*, BB, MaKi, LND, U 18, MaPi, CM, ET, AA, FJH) 92% of the LA and 92% of the Four-alleles were identified in 445 unrelated people from Northern Germany (Hamburg). The allele frequencies of the more recently described antigens CM and U 18 are 1.3 and 2.6%, respectively. Both alleles are significantly associated with HL-A10.

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Zusammenfassung Bei Verwendung von 8 LA-(HL-A1, HL-A2, HL-A3, HL-A9, HL-A10, HL-A13, Ba^*, Li) und 15 Four-Antiserenspezifitäten (HL-A5, HL-A7, HL-A8, HL-A12, HL-A13, R^*, BB, MaKi, LND, U 18, MaPi, CM, ET, AA, FJH) konnten an 445 nichtverwandten Personen aus dem norddeutschen Raum 92% aller LA- und 92% aller Four-Allele identifiziert werden. Die Allelhäufigkeiten der erst seit kurzer Zeit beschriebenen Allele CM und U 18 betragen 1,3 bzw. 2,6%. Beide Allele zeigen eine signifikant hohe gametische Assoziation zu HL-A10.

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Supported by the Deutsche Forschungsgemeinschaft.     

Electrical responses of the superior olivary complex in Vespertilionidae and Rhinolophidae to ultrasonic stimuli with different fill frequency

Global and single unit responses of the superior olivary complex were investigated during ultrasonic stimulation at different frequencies in two species of bats from the Vespertilionidae, which emit frequency-modulated signals and the Rhinolophidae, which utilize almost monochromatic (80 ± 1 kHz) echolocation cries. Maximal sensitivity to ultrasound in the Vespertilionidae was found at frequencies of 10–40 kHz, and in the Rhinolophidae also within the range 10–40 kHz but with a second increase in sensitivity in the region 82–86 kHz. Sharply tuned neurons were more numerous in the Rhinolophidae than in the Vespertilionidae. Neurons whose response in the echolocation frequency band changed in character depending on the fill frequency of the stimulus were found in Rhinolophidae: a phasic discharge occurs over a wide range of frequencies and a tonic discharge at the characteristic frequency; the latter was also observed over a limited range of intensities.A. A. Zhdanov Leningrad State University. Translated from Neirofiziologiya, Vol. 5, No. 1, pp. 33–39, January–February, 1973.     

Mapping of two new markers within the smallest interval harboring the spinal muscular atrophy locus by family and radiation hybrid analysis

The locus responsible for the childhood-onset proximal spinal muscular atrophies (SMA) has recently been mapped to an area of 2–3 Mb in the region q12–13.3 of chromosome 5. We have used a series of radiation hybrids (RHs) containing distinct parts of the SMA region as defined by reference markers. A cosmid library was constructed from one RH. Thirteen clones were isolated and five of these were mapped within the SMA region. Both RH mapping and fluorescence in situ hybridization analysis showed that two clones map in the region between loci D5S125 and D5S351. One of the cosmids contains expressed sequences. Polymorphic dinucleotide repeats were identified in both clones and used for segregation analysis of key recombinant SMA families. One recombination between the SMA locus and the new marker 9Ic (D5S685) indicates that 9Ic is probably the closest distal marker. The absence of recombination between the SMA locus and marker Fc (D5S684) suggests that Fc is located close to the disease gene. These new loci should refine linkage analysis in SMA family studies and may facilitate the isolation of the disease gene.     

Statistical genetic considerations for maintaining germ plasm collections

One objective of the regeneration of genetic populations is to maintain at least one copy of each allele present in the original population. Genetic diversity within populations depends on the number and frequency of alleles across all loci. The objectives of this study on outbreeding crops are: (1) to use probability models to determine optimal sample sizes for the regeneration for a number of alleles at independent loci; and (2) to examine theoretical considerations in choosing core subsets of a collection. If we assume that k-1 alleles occur at an identical low frequency of p₀ and that the k^th allele occurs at a frequency of 1-[(k-1)p₀], for loci with two, three, or four alleles, each with a p₀ of 0.05, 89–110 additional individuals are required if at least one allele at each of 10 loci is to be retained with a 90% probability; if 100 loci are involved, 134–155 individuals are required. For two, three, or four alleles, when p₀ is 0.03 at each of 10 loci, the sample size required to include at least one of the alleles from each class in each locus is 150–186 individuals; if 100 loci are involved, 75 additional individuals are required. Sample sizes of 160–210 plants are required to capture alleles at frequencies of 0.05 or higher in each of 150 loci, with a 90–95% probability. For rare alleles widespread throughout the collection, most alleles with frequencies of 0.03 and 0.05 per locus will be included in a core subset of 25–100 accessions.