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1.
CLADISTIC ANALYSIS OF THE OCTOPODS BASED ON ANATOMICAL CHARACTERS   总被引:2,自引:0,他引:2  
Parsimony analysis of 29 finned and finless octopod taxa considered66 anatomical and morphological characters to discover synapomorphiesthat unite monophyletic groups. The resultant cladogram (177equally parsimonious trees at 191 steps, CI 0.429) resolvedall relationships except those among the 16 exemplars of theOctopodidae included and those among Tremoctopus, Ocythoe andArgonauta. Bootstrap values of over 90% support the monophylyof the finned and finless octopods, relationships among thefinned octopods, the bolitaenids and the monophyly of Haliphron,Tremoctopus, Ocythoe and Argonauta; bootstrap values for othernodes range from 57 to 79%. Among finned octopods, specimensrepresenting Grimpoteuthis are basal, as Voss (1988a) suggested.Specimens of Opisthoteuthis represent a distinct lineage, andare sister taxon, in this analysis, of Cirroteuthis (althoughspecimens of Stauroteuthis could not be included). New definitionsof the genera Opisthoteuthis and Grimpoteuthis are providedto reflect their separate evolutionary histories rather thantheir overt morphological similarity. Among finless octopods,bolitaenids are basal. The monophyletic Octopodidae is the sistertaxon to the clade containing the sister taxa Vitreledonellaand Amphitretus, and Haliphron, Tremoctopus, Ocythoe and Argonauta.The Ctenoglossa and Heteroglossa, families grouped by sharedradular dentition, are diphyletic and paraphyletic, respectively.The cladistic relationships demonstrate that both the Vitrele-donellidaeand Idioctopodidae are junior synonyms of the Amphitretidae;despite conspicuous morphological differences separating thesetaxa, they share a recent evolutionary history.  相似文献   

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Analysis of the nucleotide sequences of mitochondrial and nuclear DNA genes was used to examine the relationships and position of the subfamily Xiphisterinae in the system of the suborder Zoarcoidei. This study showed the genetic heterogeneity of Xiphisterinae and the propriety of its division into two subfamilies: Xiphisterinae with the genera Xiphister and Phytichthys and Cebidichthyinae with the genera Cebidichthys, Dictyosoma, Esselenichthys, and Nivchia. The genetic differences between the two subfamilies were not less, but in some cases even greater than the differences between families within the suborder; therefore, they should be raised to the rank of a family, Xiphisteridae and Cebidichthyidae, and classified not within the superfamily Stichaeoidae but rather as independent taxa of the suborder Zoarcoidei.  相似文献   

4.
The superfamily of light-harvesting complex (LHC) proteins is comprised of proteins with diverse functions in light-harvesting and photoprotection. LHC proteins bind chlorophyll (Chl) and carotenoids and include a family of LHCs that bind Chl a and c. Dinophytes (dinoflagellates) are predominantly Chl c binding algal taxa, bind peridinin or fucoxanthin as the primary carotenoid, and can possess a number of LHC subfamilies. Here we report 11 LHC sequences for the chlorophyll a-chlorophyll c 2-peridinin protein complex (acpPC) subfamily isolated from Symbiodinium sp. C3, an ecologically important peridinin binding dinoflagellate taxa. Phylogenetic analysis of these proteins suggests the acpPC subfamily forms at least three clades within the Chl a/c binding LHC family; Clade 1 clusters with rhodophyte, cryptophyte and peridinin binding dinoflagellate sequences, Clade 2 with peridinin binding dinoflagellate sequences only and Clades 3 with heterokontophytes, fucoxanthin and peridinin binding dinoflagellate sequences.  相似文献   

5.
Glycosyltransferase family14 (GT14) belongs to the glycosyltransferase (GT) superfamily that plays important roles in the biosynthesis of cell walls, the most abundant source of cellulosic biomass for bioethanol production. It has been hypothesized that DUF266 proteins are a new class of GTs related to GT14. In this study, we identified 62 GT14 and 106 DUF266 genes (named GT14-like herein) in Arabidopsis, Oryza, Populus, Sorghum and Vitis. Our phylogenetic analysis separated GT14 and GT14-like genes into two distinct clades, which were further divided into eight and five groups, respectively. Similarities in protein domain, 3D structure and gene expression were uncovered between the two phylogenetic clades, supporting the hypothesis that GT14 and GT14-like genes belong to one family. Therefore, we proposed a new family name, GT14/GT14-like family that combines both subfamilies. Variation in gene expression and protein subcellular localization within the GT14-like subfamily were greater than those within the GT14 subfamily. One-half of the Arabidopsis and Populus GT14/GT14-like genes were found to be preferentially expressed in stem/xylem, indicating that they are likely involved in cell wall biosynthesis. This study provided new insights into the evolution and functional diversification of the GT14/GT14-like family genes.  相似文献   

6.
Limpet-like and non-mineralized fossils from the upper Kimmeridgian Nusplingen Plattenkalk are identified as internal shells of coleoid cephalopods, more specifically as octobrachian gladii. The significantly reduced median field provokes us to consider this new gladius type to be shorter than the mantle length. It is consequently seen as a vestigial gladius. The first recognition of an unpaired gladius vestige in the fossil record sheds new light on the evolutionary history of the gladius vestiges of incirrate and cirrate Octopoda. Patelloctopus ilgi sp. nov. is most similar to Callovian Pearceiteuthis buyi in having a rudimentary median field with an extraordinary large opening angle and radiating ribs on the lateral fields. Both P. ilgi sp. nov. and P. buyi are therefore combined in the new family Patelloctopodidae. The patella-shaped lateral fields of the gladius vestige exposes Patelloctopus and Pearceiteuthis as members of the superfamily Muensterelloidea, which includes, apart from Patelloctopodidae, the Muensterellidae and Enchoteuthidae. The unpaired patelloctopodid gladius vestige is morphologically intermediate between the muensterelloid gladius type and the paired (bipartite) gladius vestige of Late Cretaceous Palaeoctopodidae (Palaeoctopus, Keuppia). The gladius vestige morphology suggests that the mode of locomotion and the life style of these shallow water inhabitants were similar to those of extant deep-sea octopods (Cirrata) and that the Patelloctopodidae represents the stem group of the Octopoda (Cirrata and Incirrata), although Patelloctopus ilgi sp. nov. might alternatively be a stem incirrate.  相似文献   

7.
As a step towards understanding the higher‐level phylogeny and evolutionary affinities of quadrifid noctuoid moths, we have undertaken the first large‐scale molecular phylogenetic analysis of the moth family Erebidae, including almost all subfamilies, as well as most tribes and subtribes. DNA sequence data for one mitochondrial gene (COI) and seven nuclear genes (EF‐1α, wingless, RpS5, IDH, MDH, GAPDH and CAD) were analysed for a total of 237 taxa, principally type genera of higher taxa. Data matrices (6407 bp in total) were analysed by parsimony with equal weighting and model‐based evolutionary methods (maximum likelihood), which revealed a well‐resolved skeleton phylogenetic hypothesis with 18 major lineages, which we treat here as subfamilies of Erebidae. We thus present a new phylogeny for Erebidae consisting of 18 moderate to strongly supported subfamilies: Scoliopteryginae, Rivulinae, Anobinae, Hypeninae, Lymantriinae, Pangraptinae, Herminiinae, Aganainae, Arctiinae, Calpinae, Hypocalinae, Eulepidotinae, Toxocampinae, Tinoliinae, Scolecocampinae, Hypenodinae, Boletobiinae and Erebinae. Where possible, each monophyletic lineage is diagnosed by autapomorphic morphological character states, and within each subfamily, monophyletic tribes and subtribes can be circumscribed, most of which can also be diagnosed by morphological apomorphies. All additional taxa sampled fell within one of the four previously recognized quadrifid families (mostly into Erebidae), which are now found to include two unusual monobasic taxa from New Guinea: Cocytiinae (now in Erebidae: Erebinae) and Eucocytiinae (now in Noctuidae: Pantheinae).  相似文献   

8.
The Dicrocoeliidae is a highly diverse family of digeneans parasitic in amniotic tetrapods. Detailed molecular phylogenetic analysis of dicrocoeliids is lacking and only a few dicrocoeliids from mammals have been included in previous studies. Sequence data were previously absent for the Anenterotrematidae that shares several morphological characteristics with dicrocoeliids. We examined phylogenetic affinities of several newly sequenced (nuclear 28S rDNA) taxa of dicrocoeliids and anenterotrematids collected from small mammals in Ecuador, Panama, Peru, USA and Vietnam. Our analyses demonstrated that the two anenterotrematid genera (Anenterotrema, Apharyngotrema) belong to the Dicrocoeliidae, placing the Anenterotrematidae into synonymy with the Dicrocoeliidae. Molecular data combined with morphological examination of type and new specimens provided evidence that Parametadelphis and Apharyngotrema are junior synonyms of Metadelphis, with all Metadelphis species lacking a digestive system. Phylogenetic analysis demonstrates that reduction of the alimentary tract in Lutztrema and its loss in Anenterotrema and Metadelphis represent at least two independent evolutionary events. Genera Brachylecithum, Brachydistomum, and Lyperosomum proved to be non-monophyletic, each likely representing more than a single genus. Furthermore, phylogenetic analysis did not support monophyly of the two largest subfamilies of the Dicrocoeliidae (Dicrocoeliinae and Leipertrematinae) with the other two subfamilies not included in this study. Therefore, we propose to abandon the current subfamily division of the Dicrocoeliidae. Analysis of host associations indicates multiple host-switching events throughout evolution of dicrocoeliids. Lastly, analysis of dicrocoeliid geographic distribution revealed that nearly all major clades included taxa from more than a single zoogeographic realm with the exception of the clade Anenterotrema?+?Metadelphis, found only in the Neotropics.  相似文献   

9.
Two octopod species are reported from the Canary Islands (eastern Atlantic Ocean) for the first time: the deep sea four-horn octopus, Pteroctopus tetracirrhus (Delle Chiaje, 1830) and the gelatinous giant octopus, Haliphron atlanticus Steenstrup, 1861. Both female specimens were caught in Tenerife. Haliphron atlanticus is described from fresh remains found floating close to the southwest coast and the second species, P. tetracirrhus, is described from a specimen captured in a shrimp trap at 200 m depth on the southeastern coast of Tenerife. With these two additions the revised and updated list of octopod species of the Canary Islands now comprises eight families and 18 species, all of them incirrate octopods. The zoogeographic relationships of octopod species from other Atlantic regions, including the Mediterranean Sea, were studied. The likely directions of faunal flows were inferred based on affinity indices, showing that Mauritania could be the most probable source of the octopod species of the Canary Islands and the rest of the Macaronesian archipelagos.  相似文献   

10.
Several studies on cognition, molecular phylogenetics and taxonomic diversity independently suggest that Darwin''s finches are part of a larger clade of speciose, flexible birds, the family Thraupidae, a member of the New World nine-primaried oscine superfamily Emberizoidea. Here, we first present a new, previously unpublished, dataset of feeding innovations covering the Neotropical region and compare the stem clades of Darwin''s finches to other neotropical clades at the levels of the subfamily, family and superfamily/order. Both in terms of raw frequency as well as rates corrected for research effort and phylogeny, the family Thraupidae and superfamily Emberizoidea show high levels of innovation, supporting the idea that adaptive radiations are favoured when the ancestral stem species were flexible. Second, we discuss examples of innovation and problem-solving in two opportunistic and tame Emberizoid species, the Barbados bullfinch Loxigilla barbadensis and the Carib grackle Quiscalus lugubris fortirostris in Barbados. We review studies on these two species and argue that a comparison of L. barbadensis with its closest, but very shy and conservative local relative, the black-faced grassquit Tiaris bicolor, might provide key insights into the evolutionary divergence of cognition.  相似文献   

11.
We re‐examine the higher level phylogeny and evolutionary affinities of the family Gelechiidae (Lepidoptera: Gelechioidea) based on DNA sequence data for one mitochondrial gene (cytochrome c oxidase subunit I) and seven nuclear genes (Elongation Factor‐1α, wingless, Ribosomal protein S5, Isocitrate dehydrogenase, Cytosolic malate dehydrogenase, Glyceraldehyde‐3‐phosphate dehydrogenase and Carbamoylphosphate synthase domain protein). Fifty‐two taxa representing nearly all established subfamilies and tribes of Gelechiidae, and about 10% of described gelechiid genera, in addition to five outgroup taxa were sequenced. Data matrices (6157 bp total) were analysed under model‐based evolutionary methods (Maximum Likelihood and Bayesian Inference), resulting in novel high‐level phylogenetic interrelationships. The best supported cladogram divided the Gelechiidae into six distinct clades corresponding to the subfamilies Anacampsinae, Dichomeridinae, Apatetrinae, Thiotrichinae, Anomologinae and Gelechiinae (+ Physoptilinae, which were not available for study). The results suggest the following adjustments in gelechiid interrelationships: Brachmini is nested within Dichomeridinae; Anarsiini is the sister group of Chelariini; Pexicopiinae is the sister group of Apatetrinae, here suggested to be treated as a tribe Pexicopiini of Apatetrinae. A new subfamily Thiotrichinae ( subfam.n. ) is proposed on the basis of the resurrected genus Thiotricha Meyrick ( gen.rev. ), which includes Macrenches Meyrick, Palumbina Rondani and Polyhymno Chambers. Gelechiidae display a wide array of life‐history strategies, but the diversity in patterns of larval mode of life has direct phylogenetic correlation only below subfamily level, suggesting multiple origins and/or frequent reversals for traits such as external or internal feeding and leaf mining within the family.  相似文献   

12.
The phylogenetic relationships of the family Congiopodidae are inferred based on morphological characters. The monophyly of this family is supported by 13 unambiguous apomorphic characters, including four autapomorphies among the superfamily Scorpaenoidea. The Congiopodidae shares 26 apomorphic characters with other scorpaenoid taxa, and these characters are considered to also support the monophyly of the family. Upon completion of the phylogenetic analysis using the characters in 39 transformation series, it was assumed that the family is unambiguously supported by five characters (and also by three and one characters when ACCTRAN and DELTRAN are used, respectively) and is branched into two major clades, including Congiopodus and Alertichthys plus Zanclorhynchus, respectively. Based on the phylogenetic relationships, a new classification, recognizing two subfamilies (Congiopodinae and Zanclorhynchinae) in the family Congiopodidae, is proposed. The genus Perryena, that was recently inferred being closely related to the Tetrarogidae (although many authors included it in the Congiopodidae), is provisionally placed into the Congiopodidae as incertae sedis.  相似文献   

13.
The phylogeny of the family Sciaridae is reconstructed, based on maximum likelihood, maximum parsimony, and Bayesian analyses of 4809 bp from two mitochondrial (COI and 16S) and two nuclear (18S and 28S) genes for 100 taxa including the outgroup taxa. According to the present phylogenetic analyses, Sciaridae comprise three subfamilies and two genus groups: Sciarinae, Chaetosciara group, Cratyninae, and Pseudolycoriella group + Megalosphyinae. Our molecular results are largely congruent with one of the former hypotheses based on morphological data with respect to the monophyly of genera and subfamilies (Sciarinae, Megalosphyinae, and part of postulated “new subfamily”); however, the subfamily Cratyninae is shown to be polyphyletic, and the genera Bradysia, Corynoptera, Leptosciarella, Lycoriella, and Phytosciara are also recognized as non-monophyletic groups. While the ancestral larval habitat state of the family Sciaridae, based on Bayesian inference, is dead plant material (plant litter + rotten wood), the common ancestors of Phytosciara and Bradysia are inferred to living plants habitat. Therefore, shifts in larval habitats from dead plant material to living plants may have occurred within the Sciaridae at least once. Based on the results, we discuss phylogenetic relationships within the family, and present an evolutionary scenario of development of larval habitats.  相似文献   

14.
Expressed Sequence Tags from a variety of plant species have been useful for comparative genomics. The evolution of the Chloridoideae subfamily, previously lacking sequence data, was clarified by analysis of Bermudagrass (Cynodon dactylon) ESTs generated from a normalized cDNA library. Using EST collections, we generated unigene sets and analyzed them to further elucidate the evolutionary history of grass subfamilies. A total of eight grasses (C. dactylon, Sorghum bicolor, Saccharum officinarum, Zea mays, Oryza sativa, Hordeum vulgare, Festuca arundinacea, and Triticum aestivum) in four subfamilies and five tribes were analyzed using two different approaches—synonymous substitution rates (Ks) and phylogenetic trees. Ks distributions of paralogous genes suggested several duplication events in C. dactylon, S. bicolor, H. vulgare, and T. aestivum. Phylogenetic analysis with the unigene sets indicated that the analyzed grasses diverged from a common ancestor after a shared ancient polyploidization (ca. 50.0?~?67.8 million years ago). Ks distributions of orthologous genes suggested that the Chloridoideae and Panicoideae subfamilies diverged about 34.6?~?38.5 million years ago. With the evidence described in this study, we found traces of genomic changes in some grass subfamilies after the divergence of the PACC and BEP clades as well as divergence of Chloridoideae subfamily.  相似文献   

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Cerambycidae (longhorn beetles) and related families in the superfamily Chrysomeloidea are important components of forest ecosystems and play a key role in nutrient cycling and pollination. Using full mitochondrial genomes and dense taxon sampling, the phylogeny of Chrysomeloidea with a focus on Cerambycidae and allied families was explored. We used 151 mitochondrial genomes (75 newly sequenced) covering all families and 29 subfamilies of Chrysomeloidea. Our results reveal that (i) Chrysomelidae (leaf beetles) are sister to all other chrysomeloid families; (ii) Cerambycidae sensu stricto (s. s.) is polyphyletic due to the inclusion of other families that split Cerambycidae into a ‘lamiine’ clade comprising Lepturinae sensu lato (s. l.) + (Lamiinae + Spondylidinae) and a ‘cerambycine’ clade comprising Dorcasominae + (Cerambycinae + Prioninae s. l.); (iii) the subfamilies within the two clades of Cerambycidae s. s. were monophyletic, except for the placement of Necydalinae nested in Lepturinae, and the placement of Parandrinae within Prioninae (now considered as tribes Necydalini and Parandrini, respectively); (iv) smaller families were grouped into two major clades: one composed of Disteniidae+Vesperidae and the other composed of Orsodacnidae + (Megalopodidae + Oxypeltidae); (v) relationships among the four major clades were poorly supported but were resolved as ((cerambycines + (Disteniidae + Vesperidae) + Orsodacnidae + (Megalopodidae + Oxypeltidae)) + lamiines. Divergence time analyses estimated that Chrysomeloidea originated ca. 154.1 Mya during the late Jurassic, and most subfamilies of Cerambycidae originated much earlier than subfamilies of Chrysomelidae. The diversification of families within Chrysomeloidea was largely coincident with the radiation of angiosperms during the Early Cretaceous.  相似文献   

17.
This article is a taxonomic study of the radiolarian species of the superfamilies Eptingiacea and Saturnaliacea occurring in the middle Carnian fauna from the Köseyahya section, near the town of Elbistan, southeastern Turkey. This fauna is characteristic of the Tetraporobrachia haeckeli Radiolarian Zone as defined in Austria and later found also in Turkey and Oman. It comes from an 8 m thick succession of clayey/cherty limestones from the lower part of the section. In addition, a few species from the late Ladinian and Carnian from Oman and the early Norian from Alaska have also been included in this study, in order to improve some generic diagnoses and to show the diversity and evolutionary trends of some genera. 32 radiolarian species of which 22 are new are described and illustrated, and assigned to 16 genera of which three are new (Capnuchospyris, Veleptingium, and Triassolaguncula). The diagnoses of some species, genera, subfamilies and families have been revised, and the family Eptingiidae has been raised to the rank of superfamily.  相似文献   

18.
Trochoidea are a large superfamily of morphologically and ecologically diverse marine gastropods. We present here an appraisal of the composition and relationships among trochoidean families based on molecular data, with an especial focus on the family Trochidae. Bayesian analyses of sequences from three genes (18S rRNA, 28S rRNA and COI) including data from 162 vetigastropod species show that the gastropod family Trochidae (sensu  Hickman & McLean (1990 ), Natural History Museum Los Angeles County Science Series, 35, 1–169) is not monophyletic. Recognition of Chilodontidae, Solariellidae and Calliostomatidae at the family level is supported. Our new, more limited, definition of Trochidae includes the subfamilies Stomatellinae, Lirulariinae and Umboniinae and redefined Trochinae, Cantharidinae and Monodontinae. Halistylinae are provisionally retained in the Trochidae based on previous morphological studies. As redefined, Trochidae are a predominantly shallow‐water radiation in the tropics and subtropics. Some subfamilies and genera previously included in Trochidae have been moved to an enlarged family Turbinidae. The family Turbinidae has been redefined to include Turbininae, Skeneinae, Margaritinae, Tegulinae, Prisogasterinae and most surprisingly the commercially important genus Tectus Montfort, 1810. The new definition of Turbinidae means that the family includes both predominantly shallow and deep‐water clades as well as genera that are distributed across the globe from the poles to the tropics. A greater range of habitat is now seen in Turbinidae than in Trochidae. The redefined Trochidae and Turbinidae, together with Solariellidae, Calliostomatidae and Liotiidae, make up the superfamily Trochoidea. Phasianellidae and Colloniidae are recognized as belonging in a new superfamily, Phasianelloidea, and Angaria Röding, 1798 is recognized as belonging in a new superfamily, Angarioidea. Placement of Areneidae into a superfamily awaits further work.  相似文献   

19.
One new species, Lepidospora kwaii sp. n., is described from Thailand. Keys to the families, subfamilies, and genera of the family Nicoletiidae (Thysanura) and to the species of the genus Lepidospora of the world fauna are provided; data on the distribution and evolutionary trends of the bristletails of the genus Lepidospora are given.  相似文献   

20.
In order to place a newly discovered species Antigracilus costatus gen. sp. n. from the Lower Cretaceous Yixian Formation (China) and to assess previously unplaced fossil taxa, we investigated the relationships of extant and extinct lineages of Histeridae based on three data sets: (i) 69 morphological characters belonging to 48 taxa (representing all 11 subfamilies and 15 of 17 tribes of modern Histeridae); (ii) partitioned alignment of 6030 bp from downloaded nucleotide sequences (28S, CAD, COI, 18S) of 50 taxa (representing 10 subfamilies and 15 of 17 tribes of modern Histeridae); and (iii) a combined morphological and molecular dataset for 75 taxa. Phylogenetic analyses of the morphology and combined matrices recovered the new Lower Cretaceous taxon as a sister group to remaining Histeridae and it is placed in †Antigracilinae subfam. n. †Antigracilinae constitutes the earliest record of Histeridae from the Lower Cretaceous Yixian Formation (∼125 Myr), backdating the minimum age of the family by 25 Myr from the earliest Cenomanian (~99 Myr) to the Barremian of the Cretaceous Period. Our molecular phylogeny supports Histeridae to be divided into seven different clades, with currently recognised subfamilies Abraeinae (sensu lato), Saprininae, Chlamydopsinae, and Histerinae (sensu lato) recovered as monophyletic, while Dendrophilinae, Onthophilinae, and Tribalinae are polyphyletic taxa. The Burmese amber species †Pantostictus burmanicus Poinar & Brown is placed as a sister group to the tribe Plegaderini (Abraeinae) and was assigned as a new tribe Pantostictini trib. n. Both molecular and combined phylogenies recovered the subfamilies Trypanaeinae and Trypeticinae deeply within the subfamily Abraeinae (sensu lato), and they are downgraded into Trypanaeini stat. n. and Trypeticini stat. n.  相似文献   

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