Dental morphology of the Dawenkou Neolithic population in North China: implications for the origin and distribution of Sinodonty

We compare the incidence of 25 nonmetric dental traits of the people of the Neolithic Dawenkou culture (6300-4500 BP) sites in Shandong Province, North China with those of other East Asian populations. The Dawenkou teeth had an overwhelmingly greater resemblance to the Sinodont pattern typical of Northeast Asia than to the Sundadont pattern typical of Southeast Asia. Multidimensional scaling using Smith's mean measure of divergence (MMD) statistic place the Dawenkou sample near the Amur and the North China-Mongolia populations in the area of the plot indicating typical Sinodonty. The existence of the Sinodont population in Neolithic North China suggests a possible continuity of Sinodonty from the Upper Cave population at Zhoukoudian (about 34000-10000 BP) to the modern North Chinese. The presence of Sinodonty in Shandong Province shows that the Japan Sea and East China Sea were strong barriers to gene flow for at least 3000 years, because at this time the Jomonese of Japan were fully Sundadont. In addition, we suggest that the descendants of the Dawenkou population cannot be excluded as one of the source populations that contributed to sinodontification in Japan.     

Inferring population history from fine-scale spatial genetic analysis in Oryza rufipogon (Poaceae)

Determining the genetic structure of an in situ conserved population can provide insight into the dynamics of population genetic processes associated with successful plant conservation. We used 21 microsatellite loci to analyse the genetic relationships among individuals (n = 813) collected from a small Oryza rufipogon population conserved since 1993 in Hunan Province of China. The analysis revealed four distinct genetic subpopulations (F(ST) = 0.145) without geographic isolation. One subpopulation was composed of possible introgressed individuals, two subpopulations were composed of seed recruits and their descendants, and the fourth subpopulation consisted of reintroduced individuals, seed recruits and their descendants. Positive spatial genetic structures were detected by spatial autocorrelation statistics at the population (c. 63 m) and subpopulation levels (11-30 m), but the degree of autocorrelation was stronger at the population level. These results showed that prejudging the cryptic structure is important before autocorrelation analysis for the entire population. Our study suggests that population history can be a significant determinant on population structure for plant restoration projects.     

Immunoglobulin allotypes among Taiwan aborigines: evidence of malarial selection could affect studies of population affinity

The aborigines of Taiwan represent the indigenous inhabitants of the island at the time of the arrival of the Chinese from the mainland. Linguistically, the aboriginal Taiwanese are related to the Malayo-Polynesian-speaking inhabitants of Indonesia and the Philippines. Three tribes occupied lowland areas while six tribes occupied highland areas. Previous studies indicate that genetic markers associated with malaria occur in lowland populations. Though the GM haplotypes are demonstrated to be very useful in the measure of population affinities, the possibility of malarial selection on this locus could affect studies of population affinity. The present work is a case study to see whether a subdivided insular population under a possible selective load will provide divergent clustering analysis depending on the population sampled. Immunoglobulin allotype (GM and KM) profiles were generated on 230 lowland and 407 highland Taiwan Aborigines from the nine tribes. A highly significant difference in GM haplotype distribution was detected between lowland and highland populations (adjusted G = 69.408, 2 df [degrees of freedom], p < 0.00001). There were no significant differences in KM*1 frequency by altitude. The Taiwan Aboriginal GM and KM frequencies were compared to data from Indonesians, Vietnamese, Thai, Malay, Chinese from Taiwan, and Ryukyu Islanders from Okinawa using cluster analysis. The lowland populations plot among the Thai (N, NC) and Malayan Aborigines. In contrast, the highland and total Taiwan Aborigine samples plot with the Indonesian, Vietnamese, and Malayan Negrito samples. Thus, depending on the populations of Taiwan Aborigines used, different conclusions could be reached. The highland population supports the published linguistic ties; however, the lowland population does not support the linguistic relationship with Indonesian populations but is more closely related to Thai and Malays, or reflects a similar selection history.     

A Genome-Wide Survey of Genetic Variation in Gorillas Using Reduced Representation Sequencing

All non-human great apes are endangered in the wild, and it is therefore important to gain an understanding of their demography and genetic diversity. Whole genome assembly projects have provided an invaluable foundation for understanding genetics in all four genera, but to date genetic studies of multiple individuals within great ape species have largely been confined to mitochondrial DNA and a small number of other loci. Here, we present a genome-wide survey of genetic variation in gorillas using a reduced representation sequencing approach, focusing on the two lowland subspecies. We identify 3,006,670 polymorphic sites in 14 individuals: 12 western lowland gorillas (Gorilla gorilla gorilla) and 2 eastern lowland gorillas (Gorilla beringei graueri). We find that the two species are genetically distinct, based on levels of heterozygosity and patterns of allele sharing. Focusing on the western lowland population, we observe evidence for population substructure, and a deficit of rare genetic variants suggesting a recent episode of population contraction. In western lowland gorillas, there is an elevation of variation towards telomeres and centromeres on the chromosomal scale. On a finer scale, we find substantial variation in genetic diversity, including a marked reduction close to the major histocompatibility locus, perhaps indicative of recent strong selection there. These findings suggest that despite their maintaining an overall level of genetic diversity equal to or greater than that of humans, population decline, perhaps associated with disease, has been a significant factor in recent and long-term pressures on wild gorilla populations.     

Mitochondrial DNA phylogeography of western lowland gorillas (Gorilla gorilla gorilla)

The geographical distribution of genetic variation within western lowland gorillas (Gorilla gorilla gorilla) was examined to clarify the population genetic structure and recent evolutionary history of this group. DNA was amplified from shed hair collected from sites across the range of the three traditionally recognized gorilla subspecies: western lowland (G. g. gorilla), eastern lowland (G. g. graueri) and mountain (G. g. beringei) gorillas. Nucleotide sequence variation was examined in the first hypervariable domain of the mitochondrial control region and was much higher in western lowland gorillas than in either of the other two subspecies. In addition to recapitulating the major evolutionary split between eastern and western lowland gorillas, phylogenetic analysis indicates a phylogeographical division within western lowland gorillas, one haplogroup comprising gorilla populations from eastern Nigeria through to southeast Cameroon and a second comprising all other western lowland gorillas. Within this second haplogroup, haplotypes appear to be partitioned geographically into three subgroups: (i) Equatorial Guinea, (ii) Central African Republic, and (iii) Gabon and adjacent Congo. There is also evidence of limited haplotype admixture in northeastern Gabon and southeast Cameroon. The phylogeographical patterns are broadly consistent with those predicted by current Pleistocene refuge hypotheses for the region and suggest that historical events have played an important role in shaping the population structure of this subspecies.     

The Eskimo isolate of Scoresbysund—an example of the founder effect in anthropology

The east coast of Greenland is inhabited in only two places: in Angmagssalik live the direct descendants of the 413 Eskimo discovered in 1884; 1000 km further north, a small isolated settlement, Scoresbysund, was founded in 1925 by 70 Eskimo from Angmagssalik.Several biological features were studied both on the parent population and its descendants and the founders themselves and their progeny. Moreover, detailed and periodically maintained genealogical records from the time of their discovery provide exceptional complete information on these two groups and make them particularly favourable for the study of certain anthropological and genetic problems.Regarding various hereditary anthropological characteristics (blood groups, finger patterns, anthropometric measurements), the isolate shows certain particularities compared to the parent population. There is a much greater ressemblance between the settlement's founders and their present descendants than between these two groups and the parent population and its descendants. A set of converging elements indicate that this isolate represents a good example of the founder effect for various anthropological characteristics.     

High Genetic Diversity and Differentiation in Relict Lowland Populations of Gentianella austriaca (A. and J. Kern.) Holub (Gentianaceae)

Abstract: The biennial Gentianella austriaca (A. & J. Kern.) Holub, representing a nutrient-poor grassland taxon of low competition power, is becoming rare in the lowlands of eastern Austria due to changes in land use. To estimate effects of isolation and decreasing population sizes, as well as evolutionary relationships, we investigated variation in isozymes and morphological characters within and between seven populations from the mountains, foothills, and lowlands. Additionally, data on reproduction, habitat, germination and population sizes were collected to examine possible causes of variation and differentiation. We found highest genetic diversity (v_a, v_go) in the lowland and foothill populations, and highest genetic differentiation (D_ja, D_jgo) (i.e., lowest genetic identity: Nei's I) in the lowland populations. The low diversity of the mountain populations might indicate that they are derived from lowland populations. Surprisingly, highest genetic diversity was found in the smallest population. This indicates that in small remnant populations of taxa with a mixed mating system, genetic diversity might be maintained even after many generations after reducing population size dramatically. We found some relationship between genetic diversity and high fitness (germination success) and (inversely) with seed size. Plant size and reproductive success are negatively correlated with altitude, whereas flower size and seed size seem to be subject to other forces of selection. Combining all morphometric, reproductive and genetic traits, the lowland populations are most strongly differentiated and therefore of highest conservation priority.     

Isolation and characterization of microsatellite markers from the chestnut‐backed antbird,Myrmeciza exsul

We describe nine microsatellite loci from the chestnut‐backed antbird (Myrmeciza exsul), and one locus from the spotted antbird (Hylophylax naevioides) that cross‐amplifies in chestnut‐backed antbirds. The chestnut‐backed antbird is a common understorey insectivore in Neotropical lowland rain forests ranging from eastern Nicaragua to western Ecuador. Primers were developed in order to assess population structure in a fragmented landscape and to study dispersal at a local scale. Primers were tested on 60–62 individuals from a single population in the Sarapiquí Province of Costa Rica. Loci had varying degrees of polymorphism, ranging from two to 19 alleles.     

BEHAVIORAL DIFFERENTIATION IN OVIPOSITION ACTIVITY IN DROSOPHILA BUZZATII FROM HIGHLAND AND LOWLAND POPULATIONS IN ARGENTINA: PLASTICITY OR THERMAL ADAPTATION?

Highland populations of several Drosophila species in Argentina were active early in the afternoon in the field as opposed to populations from a much warmer lowland site, where flies were mainly active in the early evening prior to sunset. For one of these species, Drosophila buzzatii, we tested for a genetic component of activity differences by carrying out crosses within and between populations and measuring oviposition activity of the progeny in the laboratory. We found that activity in the highland population exceeded that in the lowland one during the midafternoon, whereas activity in the lowland population exceeded that in the highland one prior to the beginning of the dark period. Oviposition activity for the period corresponding to the field observations was regressed on the proportion of the genome derived from the highland population. This variable significantly predicted oviposition activity between 1400 and 1600 and between 2000 and 2200 h. Activity of both reciprocal crosses was intermediate and not significantly different from each other, suggesting that nuclear genetic, rather than cytoplasmic factors contribute to differences in oviposition activity between the populations. Two morphological, one genetic, and one stress resistance trait were also scored to examine whether temperature differences between environments were associated with other differences between populations. Wing length of wild-caught and laboratory-reared flies from the highland population significantly exceeded that in the lowland. Thorax length of laboratory-reared flies from the highland population also significantly exceeded that from the lowland. Chromosomal inversion frequencies differed significantly between the two populations with a fivefold reduction in the frequency of arrangement 2st in the highland as compared to the lowland population. This arrangement is known for its negative dose effect on size, and thus, the highland population has experienced a genetic change, perhaps as a result of adaptation to the colder environment, where body size and the frequency of arrangement 2st have changed in concert. Finally, a heat knockdown test revealed that the lowland population was significantly more resistant to high temperature than the highland one. In conclusion, we suggest that temperature has been an important selective agent causing adaptive differentiation between these two populations. We also suggest that the activity rhythms of the two populations have diverged as a consequence of behavioral evolution, that is, through avoidance of stressful temperatures as a mean of thermal adaptation.     

五指山热带雨林黑桫椤种群及其所在群落特征

黑桫椤(Alsophila podophylla)属国家二级保护植物.作者在海南岛五指山山地雨林和低地雨林分别设立样地对黑桫椤种群及其所在群落进行了调查,分析了热带雨林黑桫椤种群的年龄结构、空间分布格局、数量分布以及群落结构和物种多样性.结果表明,山地雨林和低地雨林中黑桫椤种群分别为稳定型种群和增长型种群,都是完全集群分布.低地雨林的黑桫椤平均密度是山地雨林的1.7倍.土壤pH值对黑桫椤种群密度有负的影响,全磷含量对其有正的影响.山地雨林林地土壤pH值大而全磷含量低,低地雨林刚好相反.土壤酸碱度和全磷含量的差异是导致两地黑桫椤数量差异的原因之一.pH值对黑桫椤平均密度的影响效应是全磷含量的2.5倍,说明pH值是影响黑桫椤种群密度的主要因素.黑桫椤所在群落垂直结构分为3个乔木亚层、2个灌木亚层及草本层.山地雨林黑桫椤所在群落的Simpson指数和Shannon-Wiener指数分别为0.957和5.305,均匀度为0.811;低地雨林黑桫椤所在群落的Simpson指数和Shannon-Wiener指数分别为0.937和5.484,均匀度为0.804.总之,五指山山地雨林和低地雨林的黑桫椤种群年龄结构、分布格局和数量分布都有一定差异,这些差异是由生境差异造成的.热带雨林黑桫椤所在群落结构复杂,物种多样性丰富.     

The Lethal Fungus Batrachochytrium dendrobatidis Is Present in Lowland Tropical Forests of Far Eastern Panamá

The fungal disease chytridiomycosis, caused by Batrachochytrium dendrobatidis (Bd), is one of the main causes of amphibian population declines and extinctions all over the world. In the Neotropics, this fungal disease has caused catastrophic declines in the highlands as it has spread throughout Central America down to Panamá. In this study, we determined the prevalence and intensity of Bd infection in three species of frogs in one highland and four lowland tropical forests, including two lowland regions in eastern Panamá in which the pathogen had not been detected previously. Bd was present in all the sites sampled with a prevalence ranging from 15–34%, similar to other Neotropical lowland sites. The intensity of Bd infection on individual frogs was low, ranging from average values of 0.11–24 zoospore equivalents per site. Our work indicates that Bd is present in anuran communities in lowland Panamá, including the Darién province, and that the intensity of the infection may vary among species from different habitats and with different life histories. The population-level consequences of Bd infection in amphibian communities from the lowlands remain to be determined. Detailed studies of amphibian species from the lowlands will be essential to determine the reason why these species are persisting despite the presence of the pathogen.     

Southern Scandinavian lowland populations of Rhytidium rugosum (Hedw.) Kindb. (Bryophyta,Rhytidiaceae) differ significantly from those in the mountains

Abstract

Haplotype diversity patterns based on internal transcribed spacer (ITS) and gpd (glyceraldehyde 3-phosphate dehydrogenase) in Scandinavian Rhytidium rugosum were compared between four populations from the mountain range and two in the southern lowlands. The mountain populations differ from the southern lowland ones in haplotype composition and the lowland ones differ from each other, suggesting different histories. A coalescent-based analysis (LAMARC) indicated immigration into the population now found in the mountains from that represented in the lowlands. Because several factors argue against such a dispersal scenario within the relatively short postglacial period, it is proposed that these migration patterns are older than the postglacial period. It is suggested that the mountain range populations immigrated from a source population either in the north-east or within Scandinavia, whereas the lowland populations are likely to represent remains of the glacial population of lowland Europe. The highest haplotype diversity in Scandinavia was found in the Gudbrandsdalen area in southern Norway. This is probably explained by the fact that this is the only region in Europe where R. rugosum regularly reproduces sexually. The lowest diversity was found on the Great Alvar on the island of Öland off the Baltic coast of southern Sweden, and is most likely a result of gradual loss of haplotypes over time.     

怒江大峡谷及下游地区7个云南少数民族YAP位点的多态性研究

本文以怒江大峡谷及下游地区的独龙族、怒族、僳僳族、阿昌族、景颇族、德昂族和傣族7个云南特有少数民族为对象,利用PCR分型法筛查Y染色体特异区YAP位点的多态性分布。结果显示：怒族的YAP^ 频率为1.82%,景颇族为12.50%,傣族为10.00%,其他4个民族群体均为YAP^-。     

Population densities and home range sizes of the Chestnut Wood-quail

ABSTRACT.   We present the first report of population density and home range estimates for the Chestnut Wood-quail ( Odontophorus hyperythrus ), an endemic and nearly threatened species of the Colombian Andes. Density estimates were obtained using playbacks and spot mapping and point transect methods. Home range sizes were estimated by radio tracking five wood-quail. Estimated densities varied from 0.3 to 0.4 groups per hectare. These densities are similar to those reported for other mountain wood-quail, but higher than those for lowland wood-quail and other species in the family Odontophoridae. Estimates of home range size varied from 2.6 to 9.0 hectares per group, and seemed to be correlated with group size. We also found evidence of overlap in the home ranges of neighboring groups. Population densities may vary with factors such as habitat type, but our estimates allow a first approximation of the population sizes of Chestnut Wood-quail in forest fragments.     

THE HERITABLE BASIS OF VARIATION IN LARVAL DEVELOPMENTAL PATTERNS WITHIN POPULATIONS OF THE WOOD FROG (RANA SYLVATICA)

This study compares the heritable basis of variation in larval developmental patterns of mountain and lowland populations of the wood frog, Rana sylvatica. Additive genetic variances, heritabilities, and genetic correlations for larval developmental time and size at metamorphosis are estimated from half-sib and full-sib crosses. Considerable additive-genetic variances and high heritabilities are revealed for developmental time in both the mountain and the lowland population. There was a high level of additive-genetic variance and high heritability for body size at metamorphosis in the mountain population, but these were very low in the lowland population. The genetic correlations between developmental rate and larval body size are negative for the mountain population and near zero for the lowland population. It is argued that the differences in genetic structure between these two populations reflect differences in the selective regimes of their respective environments.     

Are Montane Forests Demographic Sinks for Bornean White‐bearded Gibbons Hylobates albibarbis?

I estimated habitat-specific population densities for a population of Bornean white-bearded gibbons Hylobates albibarbis inhabiting seven distinct forest types at Gunung Palung National Park, West Kalimantan, Indonesia. Population densities in montane forests (0.44 individuals/km²) were almost ten times lower than those in the next best habitat (upland granite forest; 4.2 individuals/km²) and far lower than those in lowland forest types. Demographic data on 33 gibbon groups living across the seven forest types showed that reproduction was substantially depressed in montane forests compared to high-quality lowland habitats. A simple model suggests that montane forests are demographic sinks for gibbons at Gunung Palung. Follow-up data from observations of montane groups 5 yr after the initial observation period support this result. As high-quality lowland forests (source habitat for gibbons) are being disproportionately lost in and around Gunung Palung National Park due to illegal logging and conversion to oil palm plantations, an increasing percentage of the remaining forest in the park comprises sink habitat for gibbons. This result has disquieting implications for the long-term viability of gibbon populations at Gunung Palung. In addition, as montane forests are generally low-quality habitat for most rainforest vertebrates, and since lowland forests are being lost at alarming rates across the tropics, source-sink population dynamics similar to those I describe here may characterize populations of other tropical vertebrate species.     

Pigeons as seed predators and dispersers of figs in a Malaysian lowland forest

Seven pigeon species fed on figs from at least 22 Ficus taxa at a lowland forest site in Peninsular Malaysia. Forest pigeons of the genus Treron are fig-eating specialists. Although these are important fig-seed predators, at least some of the population, and pigeons from other genera, potentially disperse Ficus seeds to distant sites.     

南陵县扬子鳄的种群数量及栖息地质量

1986-1998年,在安徽省南陵县对扬子鳄种群资源及分布区栖息地状况进行了4次调查。1999年对该县扬子鳄部分栖息地的质量做了研究。结果显示,南陵县扬子鳄野生种群目前只30头左右,每4年平均递减率约38%,分布于6个镇,7个行政村中,75%的栖息地已经消失,其中东河、三里、石铺三镇生活有全县80%的扬子鳄,而石铺镇扬子鳄密度最大,引起扬子鳄种群数量下降的主要原因是栖息地破坏,同时对鳄的捕杀,污染、天灾也是重要因素,其野外栖息地主要为两种类型,农耕区普通池塘和丘陵山地的山塘、水库,耕作区食物,栖息条件较好,人鳄矛盾较小的局部水域依然是扬子鳄最佳选择,但这类水域农药化肥污染已构成对扬子鳄的潜在威胁。     

Interrelations between effective population size and other pedigree tools for the management of conserved populations

Genetic parameters widely used to monitor genetic variation in conservation programmes, such as effective number of founders, founder genome equivalents and effective population size, are interrelated in terms of coancestries and variances of contributions from ancestors to descendants. A new parameter, the effective number of non-founders, is introduced to describe the relation between effective number of founders and founder genome equivalents. Practical recommendations for the maintenance of genetic variation in small captive populations are discussed. To maintain genetic diversity, minimum coancestry among individuals should be sought. This minimizes the variances of contributions from ancestors to descendants in all previous generations. The method of choice of parents and the system of mating should be independent of each other because a clear-cut recommendation cannot be given on the latter.     

Analysis of founder representation in pedigrees: Founder equivalents and founder genome equivalents

The concepts of “founder equivalent” and “founder genome equivalent” are introduced to facilitate analysis of the founding stocks of captive or other populations for which pedigrees are available. The founder equivalents of a population are the number of equally contributing founders that would be expected to produce the same genetic diversity as in the population under study. Unequal genetic contributions by founders decrease the founder equivalents, portend greater inbreeding in future generations than would be necessary, and reflect a greater loss of the genetic diversity initially present in the founders. The number of founder genome equivalents of a population is that number of equally contributing founders with no random loss of founder alleles in descendants that would be expected to produce the same genetic diversity as in the population under study. The number of founder genome equivalents is approximately that number of wild-caught animals that would be needed to obtain the same amount of genetic diversity as is in the descendant captive population. Founder equivalents and founder genome equivalents allow comparison of the genetic merits of adding new wild-caught stock vs. further equalizing founder representations in a captive population.