Antigenic affinities of the root-nodule bacteria of legumes

Antisera prepared against 58 strains of root-nodule bacteria and against 16 strains belonging to the genusAgrobacterium were tested against 113 strains ofRhizobium, 20 strains ofAgrobacterium and 20 strains of other, possibly related, bacteria.Three serologically distinct groups of root-nodule bacteria were noted: (1)Rh. trifolii, Rh. leguminosarum andRh. phaseoli; (2)Rh. lupini, Rh. japonicum andRhizobium spp.; (3)Rh. meliloti. Strains ofRh. meliloti showed serological affinities withA. radiobacter andA. tumefaciens. All groups showed wider flagellar than somatic agglutination, and many different serotypes were apparent.The groupings obtained from this investigation are compared with those derived from other taxonomic studies, and the use of serological methods in rhizobial classification is discussed.     

Chemical analysis of exocellular, acid polysaccharides from seven Rhizobium strains

A comparative, chemical analysis of the acid exopolysaccharides from seven Rhizobium strains, involving the taxonomic groups Rhizobium meliloti, Rh. trifolii, Rh. phaseoli, and Rh. leguminosarum, is presented. Apart from the polysaccharide from Rh. meliloti, which is known to lack uronic acid, no significant differences in the carbohydrate composition were found. The two non-nitrogen-fixing strains [infective (Coryn), and non-infective (Bart A)] gave polysaccharides which differ from those produced by the infective and nitrogen-fixing strains in the detailed structural features. This difference is expressed in the pattern of periodate oxidation and cation-binding capacity.     

Discrimination of Rhizobium japonicum,Rhizobium lupini,Rhizobium trifolii,Rhizobium leguminosarum and of bacteriods by uptake of 2-ketoglutaric acid,glutamic acid and phosphate

Rhizobium strains (one each of Rh.japonicum, Rh. lupini, Rh. leguminosarum) take up 2-ketoglutaric acid in general much faster and from lower concentrations in the medium than strains of Escherichia coli, Bacillus subtilis and Chromobacterium violaceum. A strain of Enterobacter aerogenes, however, is more similar to some Rhizobium strains. The same strains of Rhizobium take up also phosphate much faster and from lower concentrations than the other bacteria tested. 4 strains of Rh. lupini proved to be significantly different from 4 strains of Rh. trifolii in taking up l-glutamic acid from three to ten times lower concentration within 5 h. A similar difference was noticed between 5 strains of Rh. leguminosarum and 2 strains of Rh. japonicum for the uptake of 2-ketoglutaric acid and of l-glutamic acid. Isolated bacteriods from nodules of Glycine max var. Chippeway have a reduced uptake capacity for glutamic acid and for 2-ketoglutaric acid during the first 10–12 h, but reach the same value after 24 h as free living Rh. japonicum cells. The differences in the uptake kinetics are independent of cell concentration. The group II Rhizobium strains (Rh. japonicum and Rh. lupini, slow growing Rhizobium) are characterized by a rapid uptake of glutamic acid to a lowremaining concentration of 1–3×10^-7 M and an uptake of 2-ketoglutaric acid to a remaining concentration of 2–5×10^-7 M. The group I Rhizobium strains (Rh. trifolii and Rh. leguminosarum, fast growing Rhizobium), can be characterized by a much slower uptake of both substances with a more than ten times higher concentration of both metabolites remaining in the medium after the same time.     

Genetic Diversity among Rhizobium leguminosarum bv. Trifolii Strains Revealed by Allozyme and Restriction Fragment Length Polymorphism Analyses

Allozyme electrophoresis and restriction fragment length polymorphism (RFLP) analyses were used to examine the genetic diversity of a collection of 18 Rhizobium leguminosarum bv. trifolii, 1 R. leguminosarum bv. viciae, and 2 R. meliloti strains. Allozyme analysis at 28 loci revealed 16 electrophoretic types. The mean genetic distance between electrophoretic types of R. leguminosarum and R. meliloti was 0.83. Within R. leguminosarum, the single strain of bv. viciae differed at an average of 0.65 from strains of bv. trifolii, while electrophoretic types of bv. trifolii differed at a range of 0.23 to 0.62. Analysis of RFLPs around two chromosomal DNA probes also delineated 16 unique RFLP patterns and yielded genetic diversity similar to that revealed by the allozyme data. Analysis of RFLPs around three Sym (symbiotic) plasmid-derived probes demonstrated that the Sym plasmids reflect genetic divergence similar to that of their bacterial hosts. The large genetic distances between many strains precluded reliable estimates of their genetic relationships.     

Photochemical oxygen evolution by Chlorella fusca in glucose

Summary Oxygen is evolved from illuminated Chlorella fusca, in absence of CO₂, on addition of glucose, fructose, mannose, and, to a small extent, galactose. The amount of oxygen, as measured by manometry, is equivalent to the amount of carbon from glucose incorporated into lipids, as determined radiochemically. This amount is much more than that incorporated in light in presence of CO₂, or in the dark. The rate of evolution of oxygen with glucose is about twice that with acetate of similar molarity, after an initial burst of respiration in case of acetate.     

On the effects of some pesticides on Rhizobium and isolation of pesticide-resistant mutants

Summary The in vitro effects on Rhizobium of two herbicides and two fungicides that are often used in Sweden were studied. The sensitivity of the strains seems to be specific since the Rhizobium meliloti strains generally were tolerating higher doses of pesticides than strains of Rh. trifolii and Rh. leguminosarum. It was possible to isolate mutants that tolerated much higher doses of the pesticides than the wild type strains.     

Patterns of Reactivity between a Panel of Monoclonal Antibodies and Forage Rhizobium Strains

A panel of 11 monoclonal antibodies raised against vegetative cells of Rhizobium leguminosarum biovar trifolii or Rhizobium meliloti was tested by enzyme-linked immunosorbent assay for reactivity with 47 strains of R. leguminosarum biovar trifolii and 60 strains of R. meliloti. The goal of the study was to define the degree of specificity associated with each antibody and to gain an understanding of the amount of antigenic diversity found among the strains and between the species. Each antibody was tested against each Rhizobium strain in four forms: washed steamed cells, washed unsteamed cells, cell-free culture broth, and nodule squash material. Each antibody showed a different pattern of reactivity among the 107 strains. One of each of the antibodies developed against R. meliloti and R. leguminosarum biovar trifolii reacted in a highly specific manner with cells or antigen from the immunogenic strain only. Nine of the antibodies recognized secreted as well as cellular antigen from many of the strains. Analysis of patterns of reactivity between the 107 strains and the 11 antibodies separated the strains into 28 groups of which 12 were represented by one strain only.     

Influence of oxygenation and carbon dioxide on the growth ofRhizobium meliloti in a fermenter

A decrease in dissolved O₂ from 90% to 50% saturation in a fermenter adversely affected both blomass production ofRhizobium meliloti ATCC 9930 and viable cell number, although oxygen was never limiting. Lower amounts of dissolved oxygen, or accidental decreases in dissolved oxygen concentration, also caused appreciable acidification of the culture broth, which was the result of CO₂ accumulation in the medium. Adding CO₂ to the aeration gas mixture affected both biomass production and mean generation time in proportion to the CO₂ concentration; the effect on viable cell number was less pronounced.R. meliloti may be considered as a microorganism moderately sensitive to CO₂. GoodR. meliloti growth requires, among other things, not only sufficient aeration (oxygenation) but also good ventilation of the CO₂ evolved during the fermentation.

---

Résumé La diminution de l'O₂ dissous de 90 à 50% de la saturation dans un fermenteur, a affecté de manière négative tant la production de biomasse deRhizobium meliloti ATCC 9930 que le nombre de cellules revivifiables, bien que l'oxygène ne fut jamais limitant. Des quantités diminuées d'oxygène dissous ou une diminution accidentelle de la concentration en oxygène dissous, ont également causé une acidification appréciable du milieu de culture résultant de l'accumulation de CO₂ dans le milieu. L'ajout de CO₂ au gaz d'aération a affecté tant la production de biomasse que le temps moyen de génération, proportionnellement à la concentration de CO₂; l'effet sur le nombre de cellules revivifiables était moins prononcé.R. meliloti peut être considéré comme un microorganisme modérément sensible au CO₂. Une bonne croissance deR. meliloti requiert, entre autres, non seulement une aération (oxygénation) suffisante, mais aussi une bonne ventilation du CO₂ engendré pendant la fermentation.

---

---

Publication Number NRCC No. 32389     

Uptake and Metabolism of Carbohydrates by Bradyrhizobium japonicum Bacteroids

Bradyrhizobium japonicum bacteroids were isolated anaerobically and were supplied with ¹⁴C-labeled trehalose, sucrose, UDP-glucose, glucose, or fructose under low O₂ (2% in the gas phase). Uptake and conversion of ¹⁴C to CO₂ were measured at intervals up to 90 minutes. Of the five compounds studied, UDP-glucose was most rapidly absorbed but it was very slowly metabolized. Trehalose was the sugar most rapidly converted to CO₂, and fructose was respired at a rate at least double that of glucose. Sucrose and glucose were converted to CO₂ at a very low but measurable rate (<0.1 nanomoles per milligram protein per hour). Carbon Number 1 of glucose appeared in CO₂ at a rate 30 times greater than the conversion of carbon Number 6 to CO₂, indicating high activity of the pentose phosphate pathway. Enzymes of the Entner-Doudoroff pathway were not detected in bacteroids, but very low activities of sucrose synthase and phosphofructokinase were demonstrated. Although metabolism of sugars by B. japonicum bacteroids was clearly demonstrated, the rate of sugar uptake was only 1/30 to 1/50 the rate of succinate uptake. The overall results support the view that, although bacteroids metabolize sugars, the rates are very low and are inadequate to support nitrogenase.     

The role of aeration and agitation in the production of glucose oxidase in submerged culture. II

The main purpose of the work reported here was to establish the effectiveness of aeration and agitation, and to determine the best conditions of aeration for the growth and production of glucose oxidase of Aspergillus niger, on a semi-industrial scale. Concentration of dissolved O₂, O₂ consumption and CO₂ production were measured. It was found that the rate of growth and the activity of glucose oxidase per gram mycelium increased with the increase of speed of agitation. The concentration of dissolved oxygen of the fermentation broth, as well as the rate of respiration (O₂ consumption and CO₂ production) increased in direct proportion to the increase of speed of agitation, while assimilation of sugars was accelerated. The values of the respiratory ratio showed a fluctuation according to the presence or absence of sugar in the medium.     

Respiratory Elicitors from Rhizobium meliloti Affect Intact Alfalfa Roots

Molecules produced by Rhizobium meliloti increase respiration of alfalfa (Medicago sativa L.) roots. Maximum respiratory increases, measured either as CO₂ evolution or as O₂ uptake, were elicited in roots of 3-d-old seedlings by 16 h of exposure to living or dead R. meliloti cells at densities of 10⁷ bacteria/mL. Excising roots after exposure to bacteria and separating them into root-tip- and root-hair-containing segments showed that respiratory increases occurred only in the root-hair region. In such assays, CO₂ production by segments with root hairs increased by as much as 100% in the presence of bacteria. Two partially purified compounds from R. meliloti 1021 increased root respiration at very low, possibly picomolar, concentrations. One factor, peak B, resembled known pathogenic elicitors because it produced a rapid (15-min), transitory increase in respiration. A second factor, peak D, was quite different because root respiration increased slowly for 8 h and was maintained at the higher level. These molecules differ from lipo-chitin oligosaccharides active in root nodulation for the following reasons: (a) they do not curl alfalfa root hairs, (b) they are synthesized by bacteria in the absence of known plant inducer molecules, and (c) they are produced by a mutant R. meliloti that does not synthesize known lipo-chitin oligosaccharides. The peak-D compound(s) may benefit both symbionts by increasing CO₂, which is required for growth of R. meliloti, and possibly by increasing the energy that is available in the plant to form root nodules.     

The physiological response of marine diatoms to ocean acidification: differential roles of seawater pCO2 and pH

Although increasing the pCO₂ for diatoms will presumably down‐regulate the CO₂‐concentrating mechanism (CCM) to save energy for growth, different species have been reported to respond differently to ocean acidification (OA). To better understand their growth responses to OA, we acclimated the diatoms Thalassiosira pseudonana, Phaeodactylum tricornutum, and Chaetoceros muelleri to ambient (pCO₂ 400 μatm, pH 8.1), carbonated (pCO₂ 800 μatm, pH 8.1), acidified (pCO₂ 400 μatm, pH 7.8), and OA (pCO₂ 800 μatm, pH 7.8) conditions and investigated how seawater pCO₂ and pH affect their CCMs, photosynthesis, and respiration both individually and jointly. In all three diatoms, carbonation down‐regulated the CCMs, while acidification increased both the photosynthetic carbon fixation rate and the fraction of CO₂ as the inorganic carbon source. The positive OA effect on photosynthetic carbon fixation was more pronounced in C. muelleri, which had a relatively lower photosynthetic affinity for CO₂, than in either T. pseudonana or P. tricornutum. In response to OA, T. pseudonana increased respiration for active disposal of H⁺ to maintain its intracellular pH, whereas P. tricornutum and C. muelleri retained their respiration rate but lowered the intracellular pH to maintain the cross‐membrane electrochemical gradient for H⁺ efflux. As the net result of changes in photosynthesis and respiration, growth enhancement to OA of the three diatoms followed the order of C. muelleri > P. tricornutum > T. pseudonana. This study demonstrates that elucidating the separate and joint impacts of increased pCO₂ and decreased pH aids the mechanistic understanding of OA effects on diatoms in the future, acidified oceans.     

森林土壤融化期异养呼吸和微生物碳变化特征

采用室内土柱培养的方法,研究在不同湿度(55%和80%WFPS,土壤充水孔隙度)和不同氮素供给(NH_4Cl和KNO_3,4.5 g N/m~2)条件下,外源碳添加(葡萄糖,6.4 g C/m~2)对温带成熟阔叶红松混交林和次生白桦林土壤融化过程微生物呼吸和微生物碳的激发效应。结果表明:在整个融化培养期间,次生白桦林土壤对照CO_2累积排放量显著高于阔叶红松混交林土壤。随着土壤湿度的增加,次生白桦林土壤对照CO_2累积排放量和微生物代谢熵(q_(CO_2))显著降低,而阔叶红松混交林土壤两者显著地增加(P0.05)。两种林分土壤由葡萄糖(Glu)引起的CO_2累积排放量(9.61—13.49 g C/m~2)显著大于实验施加的葡萄糖含碳量(6.4g C/m~2),同时由Glu引起的土壤微生物碳增量为3.65—27.18 g C/m~2,而施加Glu对土壤DOC含量影响较小。因此,这种由施加Glu引起的额外碳释放可能来源于土壤固有有机碳分解。融化培养结束时,阔叶红松混交林土壤未施氮处理由Glu引起的CO_2累积排放量在两种湿度条件下均显著大于次生白桦林土壤(P0.001);随着湿度的增加,两种林分土壤Glu引起的CO_2累积排放量显著增大(P0.001)。单施KNO_3显著地增加两种湿度的次生白桦林土壤Glu引起的CO_2累积排放量(P0.01)。单施KNO_3显著地增加了两种湿度次生白桦林土壤Glu引起的微生物碳(P0.001),单施NH_4Cl显著地增加低湿度阔叶红松混交林土壤Glu引起的微生物碳(P0.001)。结合前期报道的未冻结实验结果,发现冻结过程显著地影响外源Glu对温带森林土壤微生物呼吸和微生物碳的刺激效应(P0.05),并且无论冻结与否,温带森林土壤微生物呼吸和微生物碳对外源Glu的响应均与植被类型、土壤湿度、外源氮供给及其形态存在显著的相关性。     

Occurrence of Choline and Glycine Betaine Uptake and Metabolism in the Family Rhizobiaceae and Their Roles in Osmoprotection

The role of glycine betaine and choline in osmoprotection of various Rhizobium, Sinorhizobium, Mesorhizobium, Agrobacterium, and Bradyrhizobium reference strains which display a large variation in salt tolerance was investigated. When externally provided, both compounds enhanced the growth of Rhizobium tropici, Sinorhizobium meliloti, Sinorhizobium fredii, Rhizobium galegae, Agrobacterium tumefaciens, Mesorhizobium loti, and Mesorhizobium huakuii, demonstrating their utilization as osmoprotectants. However, both compounds were inefficient for the most salt-sensitive strains, such as Rhizobium leguminosarum (all biovars), Agrobacterium rhizogenes, Rhizobium etli, and Bradyrhizobium japonicum. Except for B. japonicum, all strains exhibit transport activity for glycine betaine and choline. When the medium osmolarity was raised, choline uptake activity was inhibited, whereas glycine betaine uptake was either increased in R. leguminosarum and S. meliloti or, more surprisingly, reduced in R. tropici, S. fredii, and M. loti. The transport of glycine betaine was increased by growing the cells in the presence of the substrate. With the exception of B. japonicum, all strains were able to use glycine betaine and choline as sole carbon and nitrogen sources. This catabolic function, reported for only a few soil bacteria, could increase competitiveness of rhizobial species in the rhizosphere. Choline dehydrogenase and betaine-aldehyde dehydrogenase activities were present in the cells of all strains with the exception of M. huakuii and B. japonicum. The main physiological role of glycine betaine in the family Rhizobiaceae seems to be as an energy source, while its contribution to osmoprotection is restricted to certain strains.     

Kinetics of the Oxyhydrogen Reaction in the Presence and Absence of Carbon Dioxide in Scenedesmus obliquus

The oxyhydrogen reaction in the presence and absence of CO₂ was studied in H₂-adapted Scenedesmus obliquus by monitoring the initial rates of H₂, O₂, and ¹⁴CO₂ uptake and the effect of inhibitors on these rates with gas-sensing electrodes and isotopic techniques. In the presence of 0.02 atmosphere O₂, the pH₂ was varied from 0 to 1 atmosphere. Whereas the rate of O₂ uptake increased by only 30%, the rate of H₂ uptake increased severalfold over the range of pH₂ values. At 0.1 atmosphere H₂ and 0.02 atmosphere O₂, rates for H₂ and O₂ uptake were between 15 and 25 micromoles per milligram chlorophyll per hour. As the pH₂ was changed from 0 to 1 atmosphere, the quotient H₂:O₂ changed from 0 to roughly 2. This change may reflect the competition between H₂ and the endogenous respiratory electron donors. Respiration in the presence of glucose and acetate was also competitive with H₂ uptake. KCN inhibited equally respiration (O₂ uptake in the absence of H₂) and the oxyhydrogen reaction in the presence and absence of CO₂. The uncoupler carbonyl cyanide p-trifluoromethoxyphenylhydrazone accelerated the rate of respiration and the oxyhydrogen reaction to a similar extent. It was concluded that the oxyhydrogen reaction both in the presence and absence of CO₂ has properties in common with components of respiration and photosynthesis. Participation of these two processes in the oxyhydrogen reaction would require a closely linked shuttle between mitochondrion and chloroplast.     

Site specific transposition of Tn7 into a Rhizobium meliloti megaplasmid

Summary Transposon Tn7 was shown to insert specifically into the megaplasmid of different Rhizobium meliloti strains. Tn7 transposition could not be detected in other Rhizobium strains such as R. trifolii, R. leguminosarum, R. phaseoli and R. japonicum. In R. meliloti strains, two unique sites in the megaplasmid were observed into which Tn7 can transpose at different frequencies. Only one copy of Tn7 could be detected in the megaplasmid and the insertion sites for Tn7 are outside the nif and nod region. Tn7 transposition in R. meliloti showed a marked preference for sites on plasmid RP4 compared to the megaplasmid sites. Attempts to cure Tn7 from the megaplasmid were unsuccessful. This site specific transposition of Tn7 in R. meliloti provides an additional genetic tool to further manipulate this important plasmid in symbiotic nitrogen fixation.     

Effects of elevated pCO2 on epilithic and endolithic metabolism of reef carbonates

We investigated effects of elevated partial pressure of CO₂ (pCO₂) on the metabolism of epilithic and endolithic phototrophic communities that colonized experimental coral blocks. Blocks of the massive coral Porites lobata were exposed to colonization by epilithic and endolithic organisms at an oceanic site in Kaneohe Bay (Hawaii) for 6 months, and then were transported to laboratory tanks. A bubbling system was used to maintain two treatments for 3 months, one at ambient pCO₂ (400 ppm) and the second at elevated pCO₂ (750 ppm). Net photosynthetic rates of epilithic communities in the high pCO₂ treatment, dominated by encrusting coralline algae, decreased by 35% while respiration rates remained constant. In contrast, metabolism of endolithic phototrophs, comprised of cyanobacteria and algae, was not significantly affected by the elevated pCO₂ even though endoliths contributed about 63% to block production.     

Photosynthetic Responses of Turf-forming Red Macroalgae to High CO2 Conditions

Seaweeds are important components of near-shore ecosystems as primary producers, foundation species, and biogeochemical engineers. Seaweed communities are likely to alter under predicted climate change scenarios. We tested the physiological responses of three perennial, turf-building, intertidal rhodophytes, Mastocarpus stellatus, Osmundea pinnatifida, and the calcified Ellisolandia elongata, to elevated pCO₂ over 6 weeks. Responses varied between these three species. E. elongata was strongly affected by high pCO₂, whereas non-calcified species were not. Elevated pCO₂ did not induce consistent responses of photosynthesis and respiration across these three species. While baseline photophysiology differed significantly between species, we found few clear effects of elevated pCO₂ on this aspect of macroalgal physiology. We found effects of within-species variation in elevated pCO₂ response in M. stellatus, but not in the other species. Overall, our data confirm the sensitivity of calcified macroalgae to elevated pCO₂, but we found no evidence suggesting that elevated pCO₂ conditions will have a strong positive or negative impact on photosynthetic parameters in non-calcified macroalgae.     

天竺桂凋落叶对凤仙花生长和光合特性的影响

采用盆栽实验,通过向土壤(每盆8kg)中添加0g·pot-1(CK)、20g·pot-1(L)、40g·pot-1(M)和80g·pot-1(H)天竺桂(Cinnamomum japonicum)凋落叶,模拟其自然分解对凤仙花(Impatiens balsamina)生长和光合特性的影响。结果显示:(1)添加天竺桂凋落叶M和H处理下,凤仙花生物量和地径均显著降低,而株高无明显变化;其叶绿素含量受到显著抑制,净光合速率(Pn)和水分利用效率(WUE)显著低于CK,而气孔导度(Gs)、胞间二氧化碳浓度(Ci)和蒸腾速率(Tr)3个气体交换参数显著高于CK。(2)Pn-PAR曲线和Pn-Ci曲线拟合表明,凤仙花在光饱和以及CO2饱和状态下的最大净光合速率(Pn max)、表观量子效率(AQY)、暗呼吸速率(Rd)、RuBP羧化效率(CE)和光呼吸速率(Rp)均随添加天竺桂凋落叶处理量的增加而呈下降趋势。(3)添加天竺桂凋落叶36d和67d时对凤仙花生长影响不明显,而处理58d时有明显抑制作用。研究表明,在模拟天竺桂凋落叶自然分解的土壤环境中,凤仙花的光合色素含量降低,抑制了其光合能力,对环境适应能力降低,导致凤仙花的生长受到抑制。     

Microcalorimetric investigations of the metabolism of yeasts VII. Flow-calorimetry of aerobic batch cultures

Summary The heat evolution of aerobic batch cultures of growing yeast (Saccharomyces cerevisiae) in glucose media was investigated by a combination of a flow-microcalorimeter with a fermentor vessel. The course of heat production, cell production and the rate of oxygen consumption were qualitatively the same for all glucose concentrations between 10 mM and 100 mM. Under optimal aerobic conditions a triphasic growth was observed due to the fermentation of glucose to ethanol, respiration of ethanol to CO₂ and acetate, and respiration of acetate to C0₂. Energy and carbon were found to be in balance for all glucose concentrations.