Functional diversity analysis helps to identify filters affecting community assembly after fen restoration by top-soil removal and hay transfer

Top-soil removal followed by species introduction through hay transfer has appeared as a method to restore drained fens. This method addresses abiotic constraints by restoring hydrology and nutrient status, and biotic constraints by removing an unwanted seed bank and counteracting dispersal-limitation. Restoration works by altering environmental filters. Knowledge about the restoration actions effect on functional traits is necessary to understand which types of species may establish. In this study we analyse which factors in top-soil removal followed by hay transfer influence selection and composition of functional traits. Top-soil removal followed by hay transfer from reference sites was conducted at two sites in the Całowanie fen, 33 km SE of Warsaw, Poland. Species and abundance data were recorded for three consecutive years. These data, combined with data on functional traits were used to analyse the effect of the restoration actions on four functional diversity-indices and the community weighted mean of functional traits. Our results reveal a strong habitat filter in the restoration site that follows an elevation gradient. At low elevation this filter selects low values of autochory and specific leaf area and high values of clonal lateral spread, Ellenberg moisture values, and dispersal through hydrochory. The transferred hay differs in trait characteristics compared to the reference site vegetation by having species of higher specific leaf area, lower Ellenberg moisture value and lower dispersal by autochory and hydrochory. The result presented here has three important implications for fen restoration. First, the difference in trait-characteristics between the transferred hay and the reference site it was harvested from limits the restoration potential. Second, since for several fen species important functional traits are filtered along an elevation-gradient, careful planning regarding depth of top-soil removal is needed. Finally the results illustrate how a functional analysis can be used to detect environmental filters acting during ecological restoration.     

Functional diversity in nematode communities across terrestrial ecosystems

Functional diversity can be defined as the distribution of trait values within a community. Hence, functional diversity can be an indicator of habitat filtering and a reliable environmental predictor of ecosystem functioning. However, there is a serious lack of studies that test how functional diversity indices change depending on the environmental conditions. The aim of this study is to provide such evidence by analyzing the distribution and variation of continuous body-mass values (i.e. functional diversity) and related shifts in body length and width in a nematode community.We used a large online dataset on nematode traits to analyze: (i) the distribution of body mass using three functional diversity indices, i.e. functional richness, functional divergence and functional evenness; (ii) the shifts in body-size traits (length and width); and (iii) the body-mass distributions of five trophic groups and of the entire nematode community.Managed grasslands exhibited the widest range of body-mass values while body-mass distribution in arable fields covered the greatest area in comparison to the other ecosystem types. The shift in body size revealed environmental filters that could not have been identified by the study of functional diversity indices per se. We found low values of functional evenness to be associated with high values of functional richness. We provide novel empirical evidence that body-mass distribution within a trophic group mirrors the effects of habitat filtering more than the distribution in the community as a whole. Hence, our trait-based approach, more than functional diversity itself, disclosed soil food-web structure and identified community responses.     

Evolutionary Analysis for Functional Divergence of the Toll-Like Receptor Gene Family and Altered Functional Constraints

The Toll-like receptor (TLR) gene family consists of type 1 transmembrane receptors, which play essential roles in both innate immunity and adaptive immune response by ligand recognition and signal transduction. Using all available vertebrate TLR protein sequences, we inferred the phylogenetic tree and then characterized critical amino acid residues for functional divergence by detecting altered functional constraints after gene duplications. We found that the extracellular domain of TLR genes showed higher functional divergence than that of the cytoplasmic domain, particularly in the region between leucine-rich repeat (LRR) 10 and LRR 15 of TLR 4. Our finding supports the concept that sequence evolution in the extracellular domain may be responsible for the broad diversity of TLR ligand-binding affinity, providing a testable hypothesis for potential targets that could be verified by further experimentation.     

水盐变化对荒漠植物功能多样性与物种多样性关系的影响

研究植物功能多样性与物种多样性关系对土壤水盐环境的响应规律,有助于掌握胁迫环境下植物多样性的维持机理.本研究分析了艾比湖高、低土壤水盐环境下荒漠植物功能多样性、物种多样性差异及二者间关系在不同水盐环境下的变化规律.结果表明:(1)高水盐环境下植物功能离散度显著低于低水盐环境(P<0.05),物种多样性指数Fish-α显著高于低水盐环境;(2)一元与多元回归分析均表明,高水盐环境下物种多样性对功能多样性RaoQ与FRic指数有显著促进作用,低水盐环境下物种多样性对功能多样性和均匀度有显著促进作用,但对功能离散度具有显著抑制作用(P<0.05);(3)物种多样性对功能多样性的影响在低水盐环境下更显著,预测力更强;(4)功能丰富度、离散度与均匀度能较敏感地反映出荒漠植物功能多样性对水盐变化的响应.本研究有助于理解荒漠植物群落构建机制,并为荒漠植物恢复与管理提供理论参考.     

植物群落功能多样性计算方法

以性状为基础的功能多样性指数在预测生态系统功能中起到越来越重要的作用.本文对近年来陆续出现的植物群落功能多样性指数进行综述.依据物种多样性指数的组成,功能多样性指数分为功能丰富度、功能均匀度和功能离散度指数.介绍了这3类指数的计算方法,有助于更好、更准确地理解“生物多样性-环境-生态系统功能”的关系.     

坡向因子对黄土高原草地群落功能多样性的影响

研究群落水平上的植物功能性状特征及功能多样性随坡向的变化规律,对认识不同坡向上的植物群落形成过程具有重要意义。以黄土高原不同坡向上的自然草地群落为研究对象,比较研究了植物功能性状(株高和比叶面积)和功能多样性测度指标(功能丰富度、功能均匀度和功能离散度)随坡向的变化规律。研究结果显示:(1)阴坡的株高和比叶面积显著高于其他坡向;(2)一元性状的功能丰富度在不同坡向间均无显著差异;阴坡和半阴坡的多元性状功能丰富度显著高于阳坡;(3)阴坡的株高功能均匀度显著高于半阳坡,而比叶面积功能均匀度在各坡向的差异并不显著;多元性状功能均匀度在不同坡向差异显著,阴坡最高,半阳坡最低;(4)阴坡和半阴坡的株高功能离散度显著高于阳坡和半阳坡,而半阴坡的比叶面积功能离散度显著高于阳坡;半阴坡的多元性状功能离散度Rao指数显著高于阳坡。研究结果暗示了,在阴坡和半阴坡上,植物对群落内的生态位空间和资源利用更充分,种间竞争强度较低,不同物种之间生态位高度分化;而在阳坡和半阳坡上,由于水分等条件的限制植物可占据的生态位空间有限,导致其对占据的生态位空间使用不足,物种间资源竞争较强烈。在群落水平上,研究地区的植物功能性状及功能多样性随坡向的规律性变化,反映了黄土高原植被群落构建过程中坡向因子对功能性状的筛选效应。该研究结果对该区的植被恢复重建的物种选择及植被布局规划具有重要实践意义。     

Phylogeny, traits, environment, and space in cerrado plant communities at Emas National Park (Brazil)

Soil, drought, and fire are abiotic factors that may act as environmental filters in the cerrado, the Brazilian savanna. We used a framework to analyze environmental filtering in geographic and phylogenetic context, sampling woody species in one of the largest cerrado reserves. In 100 quadrats, we measured 10 functional traits on each woody individual. We also measured several soil variables, altitude and slope as a rough surrogate of water availability, interval between fires, and time since last fire. Almost all environmental variables were spatially auto-correlated. We found an overall trait clustering, but not an overall phylogenetic clustering. Nevertheless, we found a phylogenetic signal for some traits. Linking phylogeny, traits, environment, and space, we were able to detect a major dichotomy between two geomorphological units. The flat tableland was positively related with altitude, fire frequency, and nutrient-richer soil. Environmental filtering caused by water availability and fire lead to trait clustering, with smaller shrubs and trees that presented thicker barks, denser woods, sclerophyllous leaves, highlighted by the prevalance of Myrtaceae. The other geomorphological unit, hilly terrain, was positively related with slope, low fire frequency, and nutrient-poorer soil. Environmental filtering was caused especially by nutrient-poor soil that lead to trait clustering, assembling taller trees, with thinner barks, lighter woods, and compound, large, tender, nutrient-richer leaves, distributed across many lineages, including Fabaceae. Hence, the high environmental variability in space with different environmental filters assembled different combination of plant traits and lineages, increasing the overall diversity in cerrado.     

Co-occurrence of tree species at fine spatial scale in a woodland cerrado,southeastern Brazil

Species co-occurrence at fine spatial scales is expected to be nonrandom in relation to species phylogenetic relatedness and functional similarity. On the one hand, closely related species that occur together and experience similar environmental conditions are likely to share phenotypic traits due to the process of environmental filtering. On the other hand, species that are too similar are unlikely to co-occur due to competitive exclusion. We surveyed a woodland cerrado, southeastern Brazil, to test whether co-occurrence in tree species shows functional or phylogenetic structuring at fine spatial scale. Searching for correlations between an index of species co-occurrence and both functional trait differences and phylogenetic distances, we provided evidence for a predominant role of environment filters in determining the co-occurrence of functionally similar tree species in cerrado. However, we did not find any effect of phylogenetic relatedness on tree species co-occurrence. We suggest that the phylogenetic relatedness of co-occurring cerrado tree species did not present a pattern, because the species functional traits were randomly distributed on the phylogeny. Thus, phylogenetic relatedness and functional similarity do not seem to limit the co-occurrence at fine spatial scale of cerrado tree species.     

群落均匀度分形分析

修正了Frontier和Ricotta等关于有效物种丰富度指数A与物种丰富度指数S之间幂律关系的定义．探讨了A与S之间分形关系的生态学意义．认为分形维数D是群落均匀度测度值在物种数S不断增加的过程中．向其逼近的一个理论值;提出了利用双对数坐标上建立的A与S拟合直线的方程．对群落均匀度的4种变化趋势进行描述的方法。以广东黑石顶自然保护区森林演替系列为例．研究了针阔叶混交林和常绿阔叶林样带上．随着样带观察长度的逐渐增加群落均匀度的变化情况。结果表明．230m长的混交林样带只存在一个线性无标度区间．群落均匀度随样带长度的不断增加而逐渐降低．向分形维数D=0．810趋近。170m长的常绿阔叶林样带存在两个线性无标度区问．在0～25m的尺度域内．随着样带长度的逐渐增加均匀度不断降低．向分形维数D=0．525逼近;在30～170m的尺度域内．随着样带观察长度的增加．群落均匀度也逐渐增加．向分形维数D=0．920趋近。     

Variability of plant species diversity in Swedish natural forest and its relation to atmospheric deposition

Within a subprogram of Integrated Monitoring (IM), understorey vegetation in Swedish natural forests was observed at fifteen reference sites over the country for twelve seasons, 1982–1993. The main task of the subprogram was to assess the impact of atmospheric deposition, mainly sulphur and nitrogen, on natural vegetation through time. The present study is focused on the variability of plant species diversity at community level and the possible impact of sulphur and nitrogen deposition. Species richness, evenness and diversity varied greatly among the sites, and between years within each site. Regarding only coniferous forests the species richness was higher in the north than in the south. But the effects of site condition and atmospheric deposition were not clarified. Changes in species diversity through time differed from site to site. No overall temporal trend was found. The atmospheric deposition of sulphur and nitrogen demonstrated a clear geographical pattern being low in the north-west and high in the south-west. Sulphur deposition declined significantly in Southern Sweden during the period. We concluded that the species diversity of understorey vegetation at the Swedish IM sites was not significantly influenced by atmospheric deposition. The changes observed are explained as natural processes.     

Disturbance–diversity models: what do they really predict and how are they tested?

The intermediate disturbance hypothesis (IDH) and the dynamic equilibrium model (DEM) are influential theories in ecology. The IDH predicts large species numbers at intermediate levels of disturbance and the DEM predicts that the effect of disturbance depends on the level of productivity. However, various indices of diversity are considered more commonly than the predicted number of species in tests of the hypotheses. This issue reaches beyond the scientific community as the predictions of the IDH and the DEM are used in the management of national parks and reserves. In order to compare responses with disturbance among measures of biodiversity, we used two different approaches of mathematical modelling and conducted an extensive meta-analysis. Two-thirds of the surveyed studies present different results for different diversity measures. Accordingly, the meta-analysis showed a narrow range of negative quadratic regression components for richness, but not evenness. Also, the two models support the IDH and the DEM, respectively, when biodiversity is measured as species richness, but predict evenness to increase with increasing disturbance, for all levels of productivity. Consequently, studies that use compound indices of diversity should present logical arguments, a priori, to why a specific index of diversity should peak in response to disturbance.     

Effects of Species Richness on Resident and Target Species Components in a Prairie Restoration

The ecological role of biodiversity in achieving successful restoration has been little explored in restoration ecology. We tested the prediction that we are more likely to create persistent, species‐rich plant communities by increasing the number of species sown, and, to some degree, by varying functional group representation, in experimental prairie plantings. There were 12 treatments consisting of 1‐, 2‐, 3‐, 4‐, 8‐, 12‐, and 16‐species mixtures of native perennials representing four functional groups (C₄ grasses, C₃ grasses, nitrogen‐fixing species, and late‐flowering composites) that predominate within Central Plains tallgrass prairies. In 2000, species were seeded into square plots (6 × 6 m), with five replicates per treatment, on former agricultural land. Annually, we measured total species richness and evenness, target species richness and cover, and richness and cover of resident species (i.e., those emerging from the seed bank). Both target species richness and rate of establishment of target communities were highest in the most species‐rich mixtures, but there was no additional benefit for treatments that contained more than eight species. Richness of resident species did not vary with target species richness; however, cover by resident species was lower in the higher target species treatments. Our results, indicating that establishment of species‐rich prairie mimics can be enhanced by starting with larger numbers of species at the outset, have implications for grassland restoration in which community biodiversity creation and maintenance are key goals.     

昆虫多样性参数的测定和表达

简要介绍了文献中常见的表示昆虫多样性的3个指数物种数、辛普森指数和香农-维纳指数的测定和计算方法,讨论了香农-维纳指数和均匀度的英文字符的正确表达形式。     

Climate change threats to the global functional diversity of freshwater fish

Climate change impacts on freshwater ecosystems and freshwater biodiversity show strong spatial variability, highlighting the importance of a global perspective. While previous studies on biodiversity mostly focused on species richness, functional diversity, which is a better predictor of ecosystem functioning, has received much less attention. This study aims to comprehensively assess climate change threats to the functional diversity of freshwater fish across the world, considering three complementary metrics—functional richness, evenness and divergence. We built on existing spatially explicit projections of geographical ranges for 11,425 riverine fish species as affected by changes in streamflow and water temperature extremes at four warming levels (1.5°C, 2.0°C, 3.2°C and 4.5°C). To estimate functional diversity, we considered the following four continuous, morphological and physiological traits: relative head length, relative body depth, trophic level and relative growth rate. Together, these traits cover five ecological functions. We treated missing trait values in two different ways: we either removed species with missing trait values or imputed them. Depending on the warming level, 6%–25% of the locations globally face a complete loss of functional diversity when assuming no dispersal (6%–17% when assuming maximal dispersal), with hotspots in the Amazon and Paraná River basins. The three facets of functional diversity do not always follow the same pattern. Sometimes, functional richness is not yet affected despite species loss, while functional evenness and divergence are already reducing. Other times, functional richness reduces, while functional evenness and/or divergence increase instead. The contrasting patterns of the three facets of functional diversity show their complementarity among each other and their added value compared to species richness. With increasing climate change, impacts on freshwater communities accelerate, making early mitigation critically important.