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1.
ZAIN BELAÚSTEGUI JORDI M. DE GIBERT JAMES H. NEBELSICK ROSA DOMÈNECH JORDI MARTINELL 《Palaeontology》2013,56(4):783-796
Abstract: Middle Miocene tests of Clypeaster from L’Arrabassada (Tarragona, north‐east Spain) show evidence of intense endoskeletozoan colonization, preserved as borings and associated carbonate secretions that allow gastrochaenid bivalves to be identified as the colonizers. Two modes of occurrence have been recognized for these bivalve dwelling cavities; ‘intrastereom clavate borings’ which are restricted to the echinoid stereom, and ‘semi‐endoskeletal dwellings’, which penetrate across the test wall and extend as carbonate crypts into the sediment fill of the internal test cavity. Their size, density and position rule out a syn‐vivo relationship with the echinoids and demonstrate that colonization was post mortem. Because of the endurance of clypeasteroid skeleton and the pronounced bell‐shaped morphology of Clypeaster, the tests of these echinoids provided the most suitable substrates for hard‐bottom colonizers on an otherwise sandy seafloor. The scenario described from Tarragona can be extended to other Neogene and Quaternary strata elsewhere; there is ample evidence for the long‐term utilization of tests of Clypeaster by gastrochaenid bivalves in shoreface palaeoenvironments. 相似文献
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Abstract A contribution to the fossil Silicoflagellates of the late Miocene in Central Italy. - A microscopic analysis of fourteen diatomite samples from a Messinian (late Miocene) stratigraphic series, in central-eastern Italy, has been carried out in order to verify the presence of Silicoflagellates. The skeletons of eight taxa were found in good condition and identified. The most abundant and continuous in the stratigraphic series examined are Dictyocha fibula and Distephanus speculum, also known in the present-day seas; Cannopilus sphaericus, a very rare and interesting species extinct in the Miocene, is limited to only two samples. On the basis of the Silicoflagellates found, it is possible to suggest that they lived in an open sea with 30–40‰ salinity and a temperature of 10–20°C. A very similar situation is present nowadays in the middle-western Adriatic Sea. 相似文献
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Calcified microbial microfossils—often interpreted as cyanobacteria—were important components of Precambrian and Paleozoic limestones, but their paucity in modern marine environments complicates our ability to make conclusive interpretations about their taxonomic affinity and geologic significance. Freshwater spring‐associated limestones (e.g., travertine and tufa) serve as terrestrial analogs to investigate mineralization in and around aquatic biofilms on observable timescales. We document the diagenesis of calcite fabrics associated with the freshwater algae Oocardium stratum, an epiphytic colonial green algae (desmid) known for producing stalks of extracellular polymeric substances (EPS) and passively producing a bifurcating tubular calcite monocrystal. Bifurcating EPS stalks produced by Oocardium colonies can become calcified and preserved in ancient carbonate deposits. Calcified micritic EPS stalks have a filamentous morphology, show evidence of branching, and maintain uniformity in diameter thickness throughout the mm‐scale colony, much like the enigmatic calcimicrobe Epiphyton. We provide a mechanism by which calcification associated with a colonial semispherical micro‐organism produces microfossils that deceptively resemble filamentous forms. These findings have implications for the use of morphological traits when assigning taxonomic affinities to extinct microfossil groups and highlight the utility of calcifying freshwater modern environments to investigate microbial taphonomy. 相似文献
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Lisa M. Schile John C. Callaway Katharine N. Suding N. Maggi Kelly 《Ecology and evolution》2017,7(4):1276-1285
Climate change impacts, such as accelerated sea‐level rise, will affect stress gradients, yet impacts on competition/stress tolerance trade‐offs and shifts in distributions are unclear. Ecosystems with strong stress gradients, such as estuaries, allow for space‐for‐time substitutions of stress factors and can give insight into future climate‐related shifts in both resource and nonresource stresses. We tested the stress gradient hypothesis and examined the effect of increased inundation stress and biotic interactions on growth and survival of two congeneric wetland sedges, Schoenoplectus acutus and Schoenoplectus americanus. We simulated sea‐level rise across existing marsh elevations and those not currently found to reflect potential future sea‐level rise conditions in two tidal wetlands differing in salinity. Plants were grown individually and together at five tidal elevations, the lowest simulating an 80‐cm increase in sea level, and harvested to assess differences in biomass after one growing season. Inundation time, salinity, sulfides, and redox potential were measured concurrently. As predicted, increasing inundation reduced biomass of the species commonly found at higher marsh elevations, with little effect on the species found along channel margins. The presence of neighbors reduced total biomass of both species, particularly at the highest elevation; facilitation did not occur at any elevation. Contrary to predictions, we documented the competitive superiority of the stress tolerator under increased inundation, which was not predicted by the stress gradient hypothesis. Multifactor manipulation experiments addressing plant response to accelerated climate change are integral to creating a more realistic, valuable, and needed assessment of potential ecosystem response. Our results point to the important and unpredicted synergies between physical stressors, which are predicted to increase in intensity with climate change, and competitive forces on biomass as stresses increase. 相似文献
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Mit mutations that disrupt function of the mitochondrial electron transport chain can, inexplicably, prolong Caenorhabditis elegans lifespan. In this study we use a metabolomics approach to identify an ensemble of mitochondrial‐derived α‐ketoacids and α‐hydroxyacids that are produced by long‐lived Mit mutants but not by other long‐lived mutants or by short‐lived mitochondrial mutants. We show that accumulation of these compounds is dependent on concerted inhibition of three α‐ketoacid dehydrogenases that share dihydrolipoamide dehydrogenase (DLD) as a common subunit, a protein previously linked in humans with increased risk of Alzheimer's disease. When the expression of DLD in wild‐type animals was reduced using RNA interference we observed an unprecedented effect on lifespan – as RNAi dosage was increased lifespan was significantly shortened, but, at higher doses, it was significantly lengthened, suggesting that DLD plays a unique role in modulating length of life. Our findings provide novel insight into the origin of the Mit phenotype. 相似文献
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Laura Masini Laura J. Grenville‐Briggs Erik Andreasson Lars Rberg sa Lankinen 《Ecology and evolution》2019,9(8):4557-4567
Studies of infection by Phytophthora infestans—the causal agent of potato late blight—in wild species can provide novel insights into plant defense responses, and indicate how wild plants might be influenced by recurrent epidemics in agricultural fields. In the present study, our aim was to investigate if different clones of Solanum dulcamara (a relative of potato) collected in the wild differ in resistance and tolerance to infection by a common European isolate of P. infestans. We performed infection experiments with six S. dulcamara genotypes (clones) both in the laboratory and in the field and measured the degree of infection and plant performance traits. In the laboratory, the six evaluated genotypes varied from resistant to susceptible, as measured by degree of infection 20 days post infection. Two of the four genotypes susceptible to infection showed a quadratic (concave downward) relationship between the degree of infection and shoot length, with maximum shoot length at intermediate values of infection. This result suggests overcompensation, that is, an increase in growth in infected individuals. The number of leaves decreased with increasing degree of infection, but at different rates in the four susceptible genotypes, indicating genetic variation for tolerance. In the field, the inoculated genotypes did not show any disease symptoms, but plant biomass at the end of the growing season was higher for inoculated plants than for controls, in‐line with the overcompensation detected in the laboratory. We conclude that in S. dulcamara there are indications of genetic variation for both resistance and tolerance to P. infestans infection. Moreover, some genotypes displayed overcompensation. Learning about plant tolerance and overcompensation to infection by pathogens can help broaden our understanding of plant defense in natural populations and help develop more sustainable plant protection strategies for economically important crop diseases. 相似文献
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The “early‐burst” model of adaptive radiation predicts an early increase in phenotypic disparity concurrent with lineage diversification. Although most studies report a lack of this coupled pattern, the underlying processes are not identified. The continental radiation of Hemidactylus geckos from Peninsular India includes morphologically diverse species that occupy various microhabitats. This radiation began diversifying ~36 Mya with an early increase in lineage diversification. Here, we test the “early‐burst” hypothesis by investigating the presence of ecomorphs and examining the pattern of morphological diversification in a phylogenetic framework. Two ecomorphs—terrestrial and scansorial species—that vary significantly in body size and toepad size were identified. Unlike the prediction of the “early‐burst” model, we find that disparity in toepad morphology accumulated more recently ~14 Mya and fit the Ornstein‐Ulhenbeck model. Ancestral state reconstruction of the two ecomorphs demonstrates that terrestrial lineages evolved independently at least five times from scansorial ancestors, with the earliest diversification in terrestrial lineages 19–12 Mya. Our study demonstrates a delayed increase in morphological disparity as a result of the evolution of terrestrial ecomorphs. The diversification of terrestrial lineages is concurrent with the establishment of open habitat and grasslands in Peninsular India, suggesting that the appearance of this novel resource led to the adaptive diversification. 相似文献
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An experimental decay methodology is developed for a cnidarian model organism to serve as a comparison to the many previous such studies on bilaterians. This allows an examination of inherent bias against the fossilisation of cnidarian tissue and their diagnostic characters, under what conditions these occur, and in what way. The decay sequence of Actinia equina was examined under a series of controlled conditions. These experiments show that cnidarian decay begins with an initial rupturing of the epidermis, followed by rapid loss of recognisable internal morphological characters. This suggests that bacteria work quicker on the epidermis than autolysis does on the internal anatomy. The data also show that diploblastic tissue is not universally decayed more slowly under anoxic or reducing conditions than under oxic conditions. Indeed, some cnidarian characters decay more rapidly under anoxic conditions than they do under oxic conditions. This suggests the decay pathways acting may be different to those affecting soft bilaterian tissue such as soft epidermis and internal organs. What is most important in the decay of soft polyp anatomy is the microbial community, which can be dominated by oxic or anoxic bacteria. Different Lagerstätte, even of the same type, will inevitably have subtle difference in their bacterial communities, which among other factors, could be a control on soft polyp preservation leading to either an absence of compelling soft anthozoans (Burgess Shale) or an astonishing abundance (Qingjiang biota). 相似文献
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Stefano Tonti Mauro Dal Prà Paola Nipoti Antonio Prodi Ilaria Alberti 《Journal of Phytopathology》2012,160(11-12):761-763
During 2011, Fusarium rot of stored garlic was detected on bulbs of ‘Aglio Bianco’ (white garlic) in Piacenza, Ferrara and Rovigo districts. Bulbs, harvested in July, were asymptomatic. During conservation in the drying sheds, approximately thirty percent of bulbs appeared emptied and softened. Fusarium proliferatum was consistently recovered from infected bulbs. The morphological identification was confirmed by Translation Elongation Factor 1‐alpha gene sequencing. Koch postulates were checked through pathogenicity tests. The disease has already been reported in Serbia, Germany, Spain, United States, China and India, but to our knowledge, this is the first report of F. proliferatum garlic bulb rot in Italy. 相似文献
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Ian Brittain Katherine Selby Moray Taylor Rick Mumford 《Journal of Phytopathology》2013,161(11-12):855-858
Real‐time polymerase chain reaction (PCR) assays were used to evaluate a small number of samples from a volumetric spore trap normally used for counting pollen grains. Samples from a total of 6 days during July and August 2011 were screened. Pathogen DNA was detected from three of four groups of economically significant plant pathogens for which real‐time PCR assays were available. These were Tilletia spp. on 1 day, Puccinia spp. on 2 days and Fusarium spp. on all 6 days. No amplification of real‐time PCR assays was detected for Phytophthora infestans or P. ramorum. The results indicate that plant pathogens can be detected in air sampling networks, which are remote from arable cropping and deployed for other purposes. This has implications for rapidly identifying periods of pathogen dispersal and improving the accuracy of information on pathogen spore load in the atmosphere. 相似文献
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Lauren Sallan Sam Giles Robert S. Sansom John T. Clarke Zerina Johanson Ivan J. Sansom Philippe Janvier 《Palaeontology》2017,60(2):149-157
The affinity of Tullimonstrum gregarium, a pincer‐mouthed, soft bodied bilaterian, has been subject to debate since its recovery from Carboniferous coal deposits at Mazon Creek, Illinois. After decades of impasse focused on mollusc, arthropod and annelid attributes, two recent, yet conflicting, high‐profile studies concluded that the ‘Tully Monster’ is a vertebrate, a relative of lampreys or jawed fishes. Here, we find that structures described as supporting vertebrate, and particularly crown vertebrate, affinity face significant challenges from biological, functional and taphonomic perspectives. Problems with comparator choice, interpretation of taphonomic processes at Mazon Creek and estimation of convergence within the bilaterian tree may have misled these recent studies, leading to conclusions which do not accommodate current understanding of the vertebrate record. For example, the absence of taphonomically‐expected synapomorphies in Tullimonstrum (e.g. otic capsules, body pigment) calls into question vertebrate identity and implies that convergence or deeper origins are responsible for vertebrate‐like traits. Further, phylogenetic placement within vertebrates is only made possible by the constraints of a chordate‐only dataset with limited outgroups and use of selective characters. Long‐discussed alternative placements among molluscs (e.g. heteropod gastropods), arthropods (e.g. anomalocarids) or elsewhere within non‐vertebrate deuterostomes are more congruent. Indeed, many of these lineages independently evolved vertebrate‐like traits, including complex eyes and ‘teeth’. Thus, given the totality of evidence, Tullimonstrum should be excluded from the vertebrate crown. Potential assignments for aberrant bilaterians, common throughout the Palaeozoic fossil record, need to be considered in light of the number and likelihood of required exceptions to established schemes. 相似文献
13.
Hana Chaïr Julie Sardos Anthea Supply Pierre Mournet Roger Malapa Vincent Lebot 《Botanical journal of the Linnean Society. Linnean Society of London》2016,180(3):319-333
Phylogenetic relationships of Oceanian staple yams (species of Dioscorea section Enantiophyllum) were investigated using plastid trnL‐F and rpl32‐trnL(UAG) sequences and nine nuclear co‐dominant microsatellites. Analysis of herbarium specimens, used as taxonomic references, allowed the comparison with samples collected in the field. It appears that D. alata, D. transversa and D. hastifolia are closely related species. This study does not support a direct ancestry from D. nummularia to D. alata as previously hypothesized. The dichotomy in D. nummularia previously described by farmers in semi‐perennial and annual types was reflected by molecular markers, but the genetic structure of D. nummularia appears more complex. Dioscorea nummularia displayed two haplotypes, each corresponding to a different genetic group. One, including a D. nummularia voucher from New Guinea, is closer to D. tranversa, D. alata and D. hastifolia and encompasses only semi‐perennial types. The second group is composed of semi‐perennial and annual yams. However, some of these annual yams also displayed D. alata haplotypes. Nuclear markers revealed that some annual yams shared alleles with D. alata and semi‐perennial D. nummularia, suggesting a hybrid origin, which may explain their intermediate morphotypes and the difficulty met in classifying them. 相似文献
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Andrey Yu. Ivantsov Guy M. Narbonne Peter W. Trusler Carolyn Greentree Patricia Vickers‐Rich 《Lethaia: An International Journal of Palaeontology and Stratigraphy》2016,49(4):540-554
Exceptionally preserved specimens of Ernietta in a shallow‐marine gutter cast from southern Namibia reveal that all previously figured specimens of this iconic Ediacaran megafossil are incomplete, representing only the base of a larger and more complex organism. The complete organism is interpreted as comprising a buried, sand‐filled anchor exhibiting the classical Ernietta morphology that passes distally into a trunk that is crowned by two facing fans that extended into the overlying water column. All parts of Ernietta, from the base of its buried anchor to the tip of its fans, appear to have been composed of a palisade of tubular elements that have been variably preserved. Similarity of tubule morphology despite the inherent difference in function between these constructions supports the view that these tubes were integral to all anatomical parts and functions of Ernietta. This style of architecture, construction and function is unique to the Erniettomorpha, supporting the view that it represents an extinct Ediacaran clade in the early evolution of multi‐cellular life. 相似文献
16.
Alan Cavalcanti da Cunha Karen Mustin Eldo Silva dos Santos Éwerton Wânderson Gonçalves dos Santos Marcelino Carneiro Guedes Helenilza Ferreira Albuquerque Cunha Paulo Cesar Colonna Rosman Leonel da Silveira Lobo Sternberg 《Freshwater Biology》2017,62(10):1721-1729
- The transport of seeds by water, i.e. hydrochory, is a key mechanism of long‐distance dispersal constrained by the attributes of the seed and hydrodynamics. In the freshwater Amazon estuary, river hydrodynamics are influenced by seasonal changes in precipitation and tidal cycles. It is not known to what extent a hydrodynamic model may be able to predict seed dispersal.
- Here we parameterised a simulation model (SisBaHia) to estimate maximum seed dispersal distances per tidal cycle, which were then compared with data from in situ seed dispersal experiments. The study was conducted along a 27‐km stretch of a tributary of the Amazon estuary, using the seeds of a widely distributed riparian tree—Carapa guianensis (Meliaceae).
- Based on the simulation model, maximum potential seed dispersal distance was higher in the rainy season (c. 8.7 km) when compared with the dry season (5.6 km), for one tidal cycle (12 hr). The seeds of C. guianensis were dispersed further during the ebb than flood tide during the rainy season, the period of seed dispersal. Average dispersal distances observed in seed dispersal experiments conducted during the rainy season, and those predicted by SisBaHia for the same period were within the same order of magnitude.
- The results of this study confirm that the period of higher precipitation provides favourable hydrological conditions for hydrochory in the Amazon river‐estuary complex. The fact that the time taken for the tide to fall is longer in relation to the time taken for it to rise also favours the arrival of the seeds in the main channel of the Amazon, thereby increasing the probability of long‐distance dispersal events.
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Tara Grosemans Krystalynne Morris William Kelley Thomas Annelien Rigaux Tom Moens Sofie Derycke 《Ecology and evolution》2016,6(6):1854-1870
Species with seemingly identical morphology but with distinct genetic differences are abundant in the marine environment and frequently co‐occur in the same habitat. Such cryptic species are typically delineated using a limited number of mitochondrial and/or nuclear marker genes, which do not yield information on gene order and gene content of the genomes under consideration. We used next‐generation sequencing to study the composition of the mitochondrial genomes of four sympatrically distributed cryptic species of the Litoditis marina species complex (PmI, PmII, PmIII, and PmIV). The ecology, biology, and natural occurrence of these four species are well known, but the evolutionary processes behind this cryptic speciation remain largely unknown. The gene order of the mitochondrial genomes of the four species was conserved, but differences in genome length, gene length, and codon usage were observed. The atp8 gene was lacking in all four species. Phylogenetic analyses confirm that PmI and PmIV are sister species and that PmIII diverged earliest. The most recent common ancestor of the four cryptic species was estimated to have diverged 16 MYA. Synonymous mutations outnumbered nonsynonymous changes in all protein‐encoding genes, with the Complex IV genes (coxI‐III) experiencing the strongest purifying selection. Our mitogenomic results show that morphologically similar species can have long evolutionary histories and that PmIII has several differences in genetic makeup compared to the three other species, which may explain why it is better adapted to higher temperatures than the other species. 相似文献
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Emma Orive Lara Pérez‐Aicua Helena David Koldo García‐Etxebarria Aitor Laza‐Martínez Sergio Seoane Irati Miguel 《Journal of phycology》2013,49(6):1192-1206
The genus Pseudo‐nitzschia contains potentially toxic species of problematic taxonomy, making it one of the most intensively studied diatom genera. The study of 35 clonal strains isolated from the Bilbao estuary, an area that experiences recurrent blooms of Pseudo‐nitzschia, revealed the presence of two new species, P. abrensis and P. plurisecta, differing from their congeners in both morphology and gene sequence. The morphological features were analyzed by LM and EM, whereas molecular analyses were based on the internal transcribed spacer (ITS) and large subunit (LSU) regions of the rDNA. P. plurisecta appears closely related to P. cuspidata/P. pseudodelicatissima in the phylogenetic tree, whereas P. abrensis forms a moderately supported clade with P. heimii/P. subpacifica and P. caciantha/P. circumpora. Comparison of the secondary structure of ITS2 regions reveals marked differences in the most highly conserved regions among related taxa. Morphologically, the new species differ from their closest congeners in the arrangement of the poroid sectors and the density of valve striae and fibulae. The two species share similar pigment composition, and belong to the group of Pseudo‐nitzschia species containing only chlorophyll c2 and c3. 相似文献
