Uptake of Metal Ions by Rhizopus arrhizus Biomass

Rhizopus arrhizus biomass was found to absorb a variety of different metal cations and anions but did not absorb alkali metal ions. The amount of uptake of the cations was directly related to ionic radii of La³⁺, Mn²⁺, Cu²⁺, Zn²⁺, Cd²⁺, Ba²⁺, Hg²⁺, Pb²⁺, UO₂²⁺, and Ag⁺. The uptake of all the cations is consistent with absorption of the metals by sites in the biomass containing phosphate, carboxylate, and other functional groups. The uptake of the molybdate and vanadate anions was strongly pH dependent, and it is proposed that the uptake mechanism involves electrostatic attraction to positively charged functional groups.     

Bioremediation of Organometallic Compounds by Bacterial Degradation

The use of organometallic compounds in the environment is constantly increasing with increased technology and progress in scientific research. But since these compounds are fairly stable, as metallic bonds are stable, they are difficult to degrade or decompose naturally. The aim of this work was to isolate and characterize heterotrophic bacteria that can degrade organometallic compounds (in this case ‘ferrocene’ and its derivatives). A Gram-negative coccobacillus was isolated from a rusting iron pipe draining into a freshwater lake, which could utilize ferrocene as a sole source of carbon. Phylogenetic analysis based on 16S rDNA sequence suggested that the isolated organism resembled an environmental isolate of Bordetella. Ferrocene degradation was confirmed by plotting the growth curve of the bacterium in a medium with ferrocene as the sole source of carbon. Further confirmation of degradation of ferrocene and its derivatives was done using Gas Chromatography Mass Spectroscopy. Since the bacterium degraded organometallic compounds and released the metal in liquid medium, it could be suggested that this organism can also be used for extracting metal ions from organo-metal containing wastes.     

Isolation and lipid composition of spinach chloroplast envelope membranes

The quenching of the Chl a² fluorescence from spinach chloroplasts and chloroplast fragments by nitroaromatic compounds and the effect of added metal cations on the quenching rate is investigated. The extent of the quenching with nitrobenzene and 1,3-dinitrobenzene was found to be independent of whether Chl a is excited directly, or through Chl b by means of electronic energy transfer. On the basis of this, the contribution from a purely static mechanism is considered as unlikely.Nitroaromatics substituted with ionizable groups are almost equally effective quenchers for the fluorescence of Chl ain vivo and in methanol. On the other hand, nitroaromatics which are slightly soluble, or nearly insoluble, in water quench more strongly the fluorescence of Chl ain vivo. The overriding factor that determines the relation between the apparent and the true quenching constant appears to be the partition of the quencher in the lipid and the aqueous phases of the membrane suspension.Divalent metal cations enhance the quenching by nitrobenzene dramatically, most likely by increasing the hydrophobic character of the chloroplast membranes. This enhancement occurs at cation concentrations higher than those corresponding to the maximal turbidity increase of the membrane suspension; hence, it is attributed to ultrastructural changes of the membrane rather than to volume changes of the thylakoid. These changes may affect the extent of the quenching both by an increase in the local concentration of the nitroaromatic, and by an enhanced rate of excitation exchange among the chlorophylls.     

Der chemotropische Effekt einiger Kationen bei den Wurzeln vonSinapis alba L. mit Berücksichtigung mancher Faktoren

Chemotropic effects exerted by metal cations have been investigated simultaneously with their influence on the increments ofSinapis alba roots cultivated in dark and light. The effects of Na-EDTA and Na-humate and its fractions, as well as the interaction of these substances with cations have also been studied. Chemotropics have been administered in agar-agar to the ends of roots growing on glass plates. Chemotropic and growth effects were exerted by Cu²⁺, Fe²⁺, Fe³⁺ and Ca²⁺ cations. The light strongly changed the effects of all but Cu²⁺ cations. Both Na-EDTA and humante appeared to be active chemotropically and generally abolished the effects of cations, although in some cases Na-EDTA made this influence more intense. Of the humate fractions, only those characterized by the ability to form complex compounds appeared to be active. No correlation has been found between chemotropic effects and the influence on the growth of roots, except for the Cu²⁺ cations, which always caused positive chemotropism and inhibited the growth of roots.     

Sediment chemistry of lakes formed by surface-mining for coal in the midwestern U.S.A.

Sediment from lakes on abandoned coal mines in the Midwestern U.S.A. was examined to determine the factors controlling chemical composition and the role the sediment plays in lake neutralization. Sediment concentrations of many cations, (especially heavy metals) are strongly correlated with sediment sulfide concentration, but poorly correlated with the pH of the overlying water. Leaching the sediment of one lake with 1 N ammonium acetate, 0.1 N HCl, and 6 N HCl revealed that cations were mostly bound in weak acid-leachable and strong acid-leachable forms. The weak acid-leachable form is likely to be metal sulfides and calcium carbonate. The sulfide-poor sediments of extremely acid lakes contained few weak acid-leachable cations. Raw mine-spoil contained large amounts of easily leached cations. There is little relationship between changes in sediment chemistry over time determined from cores of lake sediment and past lake pH. Rates of sulfide deposition were examined in sediment cores because sulfate reduction and deposition has been suggested as a major source of alkalinity in lakes influenced by acid precipitation. Although the rate of sulfate deposition in surface mine lakes is high, it alone seems to be insufficient to cause neutralization.     

LysK,the enzyme lysing Staphylococcus aureus cells: Specific kinetic features and approaches towards stabilization

LysK, the enzyme lysing cells of Staphylococcus aureus, can be considered as perspective antimicrobial agent. Knowledge of LysK properties and behavior would allow optimizing conditions of its storage as well as formulating strategy towards its stabilization. Reaction of LysK with substrate (suspension of autoclaved Staphylococcus aureus cells) has been found to be adequately described by the two-stage Michaelis–Menten kinetic scheme. Ionization of the enzyme and enzyme–substrate complex is important for revealing catalytic activity, which is controlled by two ionogenic groups with pK 6.0 and 9.6. Ionization energy of the group with pK 6.0 is of 30 kJ/mol, thus, pointing out on His residue; pK 9.6 might be attributed to metal ion or metal-bound water molecule. At temperatures lower than 40 °C, LysK stability depends on its concentration, pH and presence of low molecular weight additives. Results of electrophoresis under native and denaturing conditions as well as sedimentation analysis strongly suggest that aggregation is behind LysK inactivation. Decrease in the enzyme concentration, as well as addition of low molecular mass polyols (glycerol, sorbitol, sucrose, trehalose) and Ca²⁺ cations resulted in an enhanced (more than 100 times) stability of LysK. Dramatic stability decline observed in a narrow temperature range (40–42 °C) was accompanied by changes in LysK secondary structure as confirmed by CD spectroscopy studies. According to computer modeling data, Cys and His residues and metal cation might play a crucial role for LysK catalytic activity. Our data on the enzyme activity in the presence of ethylenediaminetetraacetic acid and different metal cations confirmed the importance of metal cation in LysK catalysis.     

The ionic environment determines ribozyme cleavage rate by modulation of nucleobase pK a

Several small ribozymes employ general acid–base catalysis as a mechanism to enhance site-specific RNA cleavage, even though the functional groups on the ribonucleoside building blocks of RNA have pK_a values far removed from physiological pH. The rate of the cleavage reaction is strongly affected by the identity of the metal cation present in the reaction solution; however, the mechanism(s) by which different cations contribute to rate enhancement has not been determined. Using the Neurospora VS ribozyme, we provide evidence that different cations confer particular shifts in the apparent pK_a values of the catalytic nucleobases, which in turn determines the fraction of RNA in the protonation state competent for general acid–base catalysis at a given pH, which determines the observed rate of the cleavage reaction. Despite large differences in observed rates of cleavage in different cations, mathematical models of general acid–base catalysis indicate that k₁, the intrinsic rate of the bond-breaking step, is essentially constant irrespective of the identity of the cation(s) in the reaction solution. Thus, in contrast to models that invoke unique roles for metal ions in ribozyme chemical mechanisms, we find that most, and possibly all, of the ion-specific rate enhancement in the VS ribozyme can be explained solely by the effect of the ions on nucleobase pK_a. The inference that k₁ is essentially constant suggests a resolution of the problem of kinetic ambiguity in favor of a model in which the lower pK_a is that of the general acid and the higher pK_a is that of the general base.     

Capacity of Spirulina platensis to accumulate manganese and its distribution in cell

Effects of manganese salt (MnCl₂) on growth of Spirulina platensis and capacity of the cyanobacteria to accumulate the metal in various cell components were studied. S. platensis cells were shown to tolerate high concentrations of manganese and preserve, although strongly suppressed, the capacity to grow in the medium containing 5.1 mM MnCl₂. The concentrations of manganese that did not inhibit growth considerably altered cell ultrastructure and changed the protein profile. The accumulation of manganese in S. platensis cells was proportional to the period of culturing and manganese concentration in the medium, reaching a plateau at about 2.5 mM. A threshold intracellular concentration of this metal is estimated as 28 ± 3 μmol/g dry wt. The fractionation of the manganese-enriched biomass demonstrated that the major portion of intracellular manganese (over 90%) was found in the total protein fraction. The chromatographic separation of the soluble protein fraction showed that manganese was incorporated into proteins with molecular weight of 5 to 15 kD. Dry biomass adsorbed manganese cations; this evidence seems to indicate a considerable contribution of biosorption to manganese accumulation by S. platensis cells.     

Characterization of the metal ion binding site in the anti-terminator protein, HutP, of Bacillus subtilis

HutP is an RNA-binding protein that regulates the expression of the histidine utilization (hut) operon in Bacillus subtilis, by binding to cis-acting regulatory sequences on hut mRNA. It requires L-histidine and an Mg²⁺ ion for binding to the specific sequence within the hut mRNA. In the present study, we show that several divalent cations can mediate the HutP–RNA interactions. The best divalent cations were Mn²⁺, Zn²⁺ and Cd²⁺, followed by Mg²⁺, Co²⁺ and Ni²⁺, while Cu²⁺, Yb²⁺ and Hg²⁺ were ineffective. In the HutP–RNA interactions, divalent cations cannot be replaced by monovalent cations, suggesting that a divalent metal ion is required for mediating the protein–RNA interactions. To clarify their importance, we have crystallized HutP in the presence of three different metal ions (Mg²⁺, Mn²⁺ and Ba²⁺), which revealed the importance of the metal ion binding site. Furthermore, these analyses clearly demonstrated how the metal ions cause the structural rearrangements that are required for the hut mRNA recognition.     

Transition metal cation inhibition of Mycobacterium tuberculosis esterase RV0045C

Mycobacterium tuberculosis virulence is highly metal‐dependent with metal availability modulating the shift from the dormant to active states of M. tuberculosis infection. Rv0045c from M. tuberculosis is a proposed metabolic serine hydrolase whose folded stability is dependent on divalent metal concentration. Herein, we measured the divalent metal inhibition profile of the enzymatic activity of Rv0045c and found specific divalent transition metal cations (Cu²⁺ ≥ Zn²⁺ > Ni²⁺ > Co²⁺) strongly inhibited its enzymatic activity. The metal cations bind allosterically, largely affecting values for k _cat rather than K _M. Removal of the artificial N‐terminal 6xHis‐tag did not change the metal‐dependent inhibition, indicating that the allosteric inhibition site is native to Rv0045c. To isolate the site of this allosteric regulation in Rv0045c, the structures of Rv0045c were determined at 1.8 Å and 2.0 Å resolution in the presence and absence of Zn²⁺ with each structure containing a previously unresolved dynamic loop spanning the binding pocket. Through the combination of structural analysis with and without zinc and targeted mutagenesis, this metal‐dependent inhibition was traced to multiple chelating residues (H202A/E204A) on a flexible loop, suggesting dynamic allosteric regulation of Rv0045c by divalent metals. Although serine hydrolases like Rv0045c are a large and diverse enzyme superfamily, this is the first structural confirmation of allosteric regulation of their enzymatic activity by divalent metals.     

Cation binding of bis(cyclic tetrapeptide). 1H n.m.r. and c.d. evidence for conformational fitting of cyclic backbone and covalent CSSC bridge

Conformational aspects of the complexation of bis(cyclic tetrapeptide), S,S′-bis[cyclo(Gly-l-hemiCys-Sar-l-Pro)] (BCGCSP) with a metal cation were studied. Binding constants of BCGCSP with several cations were determined in aqueous solution, using circular dichroism (c.d.) titration curves. The values were compared with those of two mono-cyclic tetrapeptides, cyclo[Gly-l-Cys[Bzl(OMe)]-Sar-l-Pro] and cyclo(Sar-l-Pro-Sar-l-Pro). When complexing with alkali metal cations, BCGCSP exhibits selective affinity for Rb⁺ in preference to Li⁺, Na⁺, and K⁺. Complexing with alkaline earth metal cations, the peptide binds Ba²⁺ selectively. In addition, BCGCSP shows a marked Ba²⁺/Ca²⁺ selectively compared with the other three cyclic peptides. In order to explain these characteristics, a pseudo-inclusion complex with a castanet type structure was proposed as a model of the bis(peptide)—cation complex. The c.d. band ascribed to disulphide (SS) bond transition, showed a red shift upon complex formation. From this observation, it is suggested that conformational fitting of bis(peptide) takes place by changing the geometry of the peptide backbone and covalent CSSC bridge upon complexation with a metal cation.     

Mass-Action Expressions of Ion Exchange Applied to Ca, H, K, and Mg Sorption on Isolated Cells Walls of Leaves from Brassica oleracea

The cation exchange properties of cell walls isolated from collard (Bassica oleracea var acephala D.C.) leaves were investigated. Cation sorption on cell walls was described by mass-action expressions of ion exchange, rather than by the traditional Donnan equilibrium. The mass-action expressions enable the selectivity of the wall for one cation over another to be determined unambiguously from ion exchange isotherms. We found that: (a) the cation composition of the wall varied as a function of the solution cation concentration, solution cation composition, and pH in a way predicted by mass action; (b) the affinity of the wall for divalent cations increased as the equivalent fraction of divalent cation on the wall increased, and as the concentration of divalent cations in solution increased; (c) the selectivity of the wall for any metal cation pair was not altered by the concentration of H⁺ in solution or on the wall; (d) H⁺ sorption on the wall may be treated as a cation exchange reaction making it possible to calculate the relative affinity of the wall for metal cation pairs from H⁺-metal (Me) titration curves; and (e) the relative affinity of the wall for the cations we studied was: H⁺ (K⁺ ≥ Ca²⁺) > Mg²⁺. A cation-exchange model including surface complexes is consistent with observed cation selectivity. We conclude that metal cations interact with the wall to minimize or eliminate long-range electrostatic interactions and suggest that this may be due to the formation of site-specific cation-wall surface complexes.     

9-Amino-acridine as a probe of the electrical double layer associated with the chloroplast thylakoid membranes

Chloroplasts washed with monovalent cations are found to quench 9-amino-acridine fluorescence after resuspension in a cation-free medium. This quenching occurs in the absence of a high energy state and can be reversed by the addition of salts. The effectiveness of these salts is related to the charge carried by the cations and appears to be essentially independent of the associated anions. The order of effectiveness is polyvalent > divalent > monovalent, and virtually no variation is found within the groups of monovalent cations and divalent cations tested. Furthermore, choline and lysine are as effective as alkali metal cations, and lysyl-lysine is almost as effective as alkaline earth metal cations. These results are consistent with an effect mediated by the electrical double layer at the membrane surface rather than chemical bonding, and can be qualitatively explained in terms of the Gouy-Chapman theory.It appears that 9-amino-acridine acts as a diffusible monovalent cation which increases its fluorescence when displaced from the diffuse layer adjacent to the negatively charged membrane surface. The 9-amino-acridine fluorescence changes have been experimentally correlated with the cation-induced chlorophyll a fluorescence changes also observed with isolated chloroplasts.     

Modifications of cell wall pectin in tomato cell suspension in response to cadmium and zinc

Retention of metal cations by the cell wall is a common process found in plants in response to stress induced by the presence of trace metals (TMs). In this study conducted on a tomato cell suspension culture, cadmium (Cd) and zinc (Zn) were added to the medium at maximal concentrations of 0.5 and 2 mM, respectively. We showed that around 50 % of Zn or Cd was confined into the cell wall of tomato cells. Besides, their accumulation in the cell wall increased with the exogenous concentration in the culture medium. Characterization of cell wall pectins showed a decrease in the highly methylesterified pectin fraction whereas the weakly methylesterified pectin remained stable in response to Cd. Moreover, a significant increase in the degree of methylesterification was observed in both fractions. This was probably associated to the reduced pectin methylesterase (PME) activity in the treated cells. Furthermore, linked to a reduction of pectin content we showed a reduced expression of the galacturonosyltransferase QUA1 gene whereas PME1 expression remained unchanged. Taking together, these data strongly suggest that pectin biosynthesis and its modification in the cell wall are strongly regulated in response to TM exposure in tomato cells.     

Structure and Function of P19, a High-Affinity Iron Transporter of the Human Pathogen Campylobacter jejuni

Campylobacter jejuni, a major cause of acute bacterial diarrhea in humans, expresses numerous proteins to import diverse forms of essential iron. The expression of p19 and an adjacent iron transporter homologue (ftr1) is strongly induced upon iron limitation, suggesting a function in iron acquisition. Here, we show that the loss of P19 alone is detrimental to growth on iron-restricted media. Furthermore, metal binding analysis demonstrates that recombinant P19 has distinct copper and iron binding sites. Crystal structures of P19 have been solved to 1.41 Å resolution, revealing an immunoglobulin-like fold. A P19 homodimer in which both monomers contribute ligands to two equivalent copper sites located adjacent to methionine-rich patches is observed. Copper coordination occurs via three histidine residues (His42, His95, and His132) and Met88. A solvent channel lined with conserved acidic residues leads to the copper site. Soaking crystals with a solution of manganese as iron analog reveals a second metal binding site in this solvent channel (metal-metal distance, 7.7 Å). Glu44 lies between the metal sites and displays multiple conformations in the crystal structures, suggesting a role in regulating metal-metal interaction. Dimerization is shown to be metal dependent in vitro and is detected in vivo by cross-linking.     

Separation of metal chelates and organometallic compounds by SFC and SFE/GC

Supercritical fluid chromatography (SFC) combines the high diffusion coefficients of gas chromatography (GC) and the solubility properties of liquid chromatography (LC). SFC generally requires lower temperatures for chromatographic separations and thus is more suitable for analyzing thermally labile compounds including a number of metal chelates and organometallic compounds. SFC also allows interfacing between supercritical fluid extraction (SFE) and chromatographic analysis of metal-containing compounds. A large number of metal chelates and organometallic compounds can be separated by SFC. This article summarizes SFC separation of various chelates of transition metals, heavy metals, lanthanides and actinides as well as organometallic compounds of lead, mercury, and tin reported in the recent literature. This article also discusses SFC detection systems and the determination of solubility of organometallic compounds by SFC.     

Functionalized cobalt clusters. Properties of carboxylate clusters (CO)6Co2HCCCOOH and (CO)10Co4HCCCOOH as related to their structures

Reaction of propiolic acid (HCCCOOH) with dicobalt octacarbonyl (Co₂(CO)₈) and tetracobalt dodecacarbonyl (Co₄(CO)₁₂) leads to the organometallic carboxylic acids (CO)₆Co₂HCCCOOH (1) and (CO)₁₀Co₄HCCCOOH (2) in good yield. Both organometallic compounds show a cobalt carbonyl core bonded to a carboxylate function. The structure of the acetylene-carboxylic group in both clusters deviates from that of ethylene. The C(1)C(2)C(3) fragment is half way between acrylic and acetylene-carboxylic acid. The comparative acidity of the carboxylic group measured in methanol reveals that (1) is a stronger acid than (2), but less acidic than propiolic acid. Both organometallic carboxylic acids are thermally decomposed into phases with high metal content at relatively low temperatures. Fenske-Hall calculations on this series of cobaltocarbonyl cluster carboxylic acids confirm that the Co(CO)₃ donates electron density to the HCCCOOH fragment, thus decreasing the acidity of the carboxylic function. The redox properties and the electronic spectra are also well correlated to the HOMO-LUMO gap thus calculated by this non-parametric SCF method.     

Metal/protein ratio determination in the Rhodobacter capsulatus cytoplasmic pyrophosphatase enzyme by particle induced X-ray emission

Inorganic pyrophosphatases are divided in two families, which differ both in structure and mechanism. All of them incorporate in its structure divalent metal cations. In 2003, it was reported for the first time that Rhodobacter capsulatus cytoplasmic pyrophosphatase belongs to family II. It is expected then, that this enzyme contains metal elements in its structure; however, this characterization has not been carried out yet. A fine application of accelerators is the use of proton beams to induce X-ray emission (PIXE) for analyzing the composition of biological macromolecules. The purpose of this work is to complement R. capsulatus cytoplasmic pyrophosphatase characterization by determining the presence of metal elements in its structure. Three different strategies were used: PAGE-PIXE, PAGE-Digestion-PIXE, and Dialysis-PIXE and when metals were found the metal/enzyme ratio was calculated. Only Cobalt was found to be associated to the enzyme chemical structure in a ratio 3 Co/enzyme.     

Ion association reactions with biological membranes,studied with the fluorescent dye 1-anilino-8-naphthalenesulfonate

Summary (1) When salts are added to buffered suspensions of membrane fragments containing the fluorochrome 1-anilino-8-naphthalenesulfonate (ANS), there is an increased fluorescence. This is caused by increased binding of the fluorochrome; the intrinsic fluorescence characteristics of the bound dye remain unaltered. These properties make ANS a sensitive and versatile indicator of ion association equilibria with membranes. (2) Alkali metal and alkylammonium cations bind to membranes in a unique manner. Cs⁺ binds most strongly to rat brain microsomal material, with the other alkali metals in the order Cs⁺>Rb⁺>K⁺>Na⁺>Li⁺. The reaction is endothermic and entropy driven. Monovalent cations are displaced by other monovalent cations. Divalent cations and some drugs (e. g., cocaine) displace monovalent cations more strongly. (3) Divalent cations bind to membranes (and to lecithin micelles) at four distinct sites, having apparent association constants between 50 and 0.2mm ^–1. The characteristics of the titration suggest that only one species of binding site is present at any one time, and open the possibility that structural transitions of the unassociated coordination sites may be induced by divalent cation binding. Divalent cation binding at the weakest site (like monovalent cation binding) is endothermic and entropy driven. At the next stronger site, the reaction is exothermic. Monovalent cations affect divalent cation binding by reducing the activity coefficient: they do not appear to displace divalent cations from their binding sites.