Structure of the vesicular stomatitis virus N⁰-P complex

Replication of non-segmented negative-strand RNA viruses requires the continuous supply of the nucleoprotein (N) in the form of a complex with the phosphoprotein (P). Here, we present the structural characterization of a soluble, heterodimeric complex between a variant of vesicular stomatitis virus N lacking its 21 N-terminal residues (N_Δ21) and a peptide of 60 amino acids (P₆₀) encompassing the molecular recognition element (MoRE) of P that binds RNA-free N (N⁰). The complex crystallized in a decameric circular form, which was solved at 3.0 Å resolution, reveals how the MoRE folds upon binding to N and competes with RNA binding and N polymerization. Small-angle X-ray scattering experiment and NMR spectroscopy on the soluble complex confirms the binding of the MoRE and indicates that its flanking regions remain flexible in the complex. The structure of this complex also suggests a mechanism for the initiation of viral RNA synthesis.     

δ15N as an indicator of N2-fixation by cyanobacterial mats in tropical marshes

Cyanobacterial mats (CBM) are important components of wetland ecosystems in limestone-based regions of the Caribbean. During two sampling periods (July 1999 and January 2000) we measured N₂-fixation in samples from 23 different marshes simultaneously with measurements of relevant environmental factors. Samples were evaluated for abundance of five groups of cyanobacteria: (1) Leptolyngbya, (2) Oscillatoria, (3) Chroococcales, (4) Nostoc-& Stigonematales, and (5) dead sheaths. Differences in nitrogen fixation, expressed as nitrogenase activity in nmol C₂H₄ cm^–2 h^–1, were best explained by the proportion of heterocyst-forming cyanobacteria. The samples were analyzed for the natural abundance of ¹⁵N. ¹⁵N values ranged from –1.99 to 11.44 and were strongly negatively correlated with N₂-fixation. With all data included, ¹⁵N was also strongly correlated with nitrates in water. With the samples from Little Belize (high nitrate content marshes) excluded, the effect of nitrate became insignificant. N₂-fixation predicted from ¹⁵N measured on an independent data set from September 2000 was moderately accurate (r² = 0.68, 0.52 and 0.54 for predictions based on July 1999, January 2000 and combined data sets, respectively). When individual sample sets were divided into two groups with ¹⁵N < 2 and ¹⁵N > 2, the two groups were always highly significantly different in terms of their N₂-fixation. The presented evidence suggests that ¹⁵N can be used as a reliable indicator of N₂-fixation by CBM.     

Contribution of 3-Deoxyglucosone as an Intermediate to Browning of Saké

The behaviour of 3-deoxyglucosone (3-D-G) was investigated in the process of browning of Saké, and it was concluded that the browning of Saké involved at least three kinds of browning reactions which were the amino-carbonyl reaction, the caramelization and some other browning reaction by components other than glucose in Saké. The active dicarbonyl compound of 3-D-G was confirmed to act as an important intermediate in both the amino-carbonyl reaction and caramelization. The caramelization was the browning of glucose by itself via 3-D-G, while the amino-carbonyl reaction was the browning of glucose via 3-D-G by the interaction with the amino compounds in Saké. The remainder was, however, independent of glucose and 3-D-G. The temperature coefficient for the rate of the overall browning of Saké was estimated to be 2.8 to 2.9 of Q₁₀ value.     

Fermentative Production of Nδ-Acetyl-L-ornithine with an Arginine and Pyrimidine Auxotroph of Paracolobactrum coliforme

In the course of selecting a useful mutant strain for a fermentative production of L-valine, it was found that an arginine-pyrimidine auxotroph of Paracolobactrum coliforme accumulated N^δ-acetyl-L-ornithine (δ-AO) in the culture medium. The accumulation of it reached a level of 16 mg/ml with medium containing 12.5 % glucose, 2.2% (NH₄)₂SO₄, 0.5% peptone and 300 μg/ml of uracil. The wild strain 775 also accumulated 1.4 mg/ml of δ-AO in the medium supplemented with a high level (300μg/ml) of uracil when L-ornithine (10 mg/ml) was added in the middle phase of fermentation. The mutant cells elongated under the condition with limited supply of uracil.

The mechanism of the accumulation of δ-AO was discussed from the information of relevant biosynthetic regulation in other organisms.     

Forest crown density restoration and influencing factors in the burned area of northern Great Hing′an Mountains of China

Fire in the Great Hing′an Mountains in 1987 affected an area of more than 1.33×10⁶ hm², creating a mosaic of burn severities across the landscape, which strongly affected the postfire vegetation succession. In addition, undulate landform and anthropogenic disturbance inevitably influenced the postfire vegetation succession. In this paper, a typical area was selected for a case study, including two forest farms, covering more than 1.2×10⁵ hm². In order to reveal how the forest changed in 2000 (13 years after the fire) by comparing with 1987 (prefire) and to find out the relationship between the forest succession and the affecting factors, forest crown density was selected as the criterion, and forest type, fire severity, silviculture practice, elevation and topography gradients were designed as the affecting variables. With the support of GIS software, each variable was classified and entered into the multivariate regression model. The result showed that the forest crown density changed notably in 2000 compared with that of the prefire, and all the variables significantly affected the forest crown density. The most important affecting variable was elevation, which was positively correlated with the forest crown density. The next was fire severity, which was negatively related with the forest succession. The effects of topographic factors and silviculture practices on forest crown density were relatively small.     

The hydrogeology of a catchment area and an artificially divided dystrophic lake — consequences for the limnology of Lake Fuchskuhle

The hydrogeology between the catchment area and the divided dystrophic Lake Fuchskuhle with respect to the genesis and the land-water interactions were investigated. Water levels at numerous locations in the catchment area were measured in order to characterize the hydrology. The water balance of the area was calculated based on long term climatic investigations. The geology of the peat was documented at 25 sampling points by cores collected with a peat drill. Chemical parameters including pH, total phosphorus and total nitrogen concentrations, DOC concentration, colour (SAK 436 m^–1) and the UV₂₅₄/DOC ratio in the catchment area and in two compartments (NE and SW compartment) were determined. The chemical fluxes of DOC, nitrogen and phosphorus from the catchment area into one compartment (SW compartment) were determined. During the genesis of the Lake Fuchskuhle area two aquifer systems (local peat aquifer, regional sandy main aquifer) developed. Both aquifers are largely independently with almost no lateral interactions. Two compartments are supplied with water from the local peat aquifer. From the other two compartments, however, water is flowing out into the peat body. During high groundwater inflow into the SW compartment higher concentration of DOC, nitrogen and phosphorus in the SW compartment were detected. The fen can be divided in two parts: in the meso — to eutrophic fen northwest and the mainly meso — to oligotrophic — acid fen in the southeast. The significant differences in parameters such as pH, conductivity and DOC concentration gave a clear picture of the heterogeneity of the two compartments and their dependence on the catchment area with the two aquifers.     

Forest crown density restoration and influencing factors in the burned area of northern Great Hing′an Mountains of China

Fire in the Great Hing′an Mountains in 1987 affected an area of more than 1.33×10⁶ hm², creating a mosaic of burn severities across the landscape, which strongly affected the postfire vegetation succession. In addition, undulate landform and anthropogenic disturbance inevitably influenced the postfire vegetation succession. In this paper, a typical area was selected for a case study, including two forest farms, covering more than 1.2×10⁵ hm². In order to reveal how the forest changed in 2000 (13 years after the fire) by comparing with 1987 (prefire) and to find out the relationship between the forest succession and the affecting factors, forest crown density was selected as the criterion, and forest type, fire severity, silviculture practice, elevation and topography gradients were designed as the affecting variables. With the support of GIS software, each variable was classified and entered into the multivariate regression model. The result showed that the forest crown density changed notably in 2000 compared with that of the prefire, and all the variables significantly affected the forest crown density. The most important affecting variable was elevation, which was positively correlated with the forest crown density. The next was fire severity, which was negatively related with the forest succession. The effects of topographic factors and silviculture practices on forest crown density were relatively small.     

Palaeolimnological study of an environmental monitoring area,or, are there pristine lakes in Finland?

A palaeolimnological study of Lake Iso-Hietajärvi in Patvinsuo National Park, Lieksa, East Finland was conducted. The drainage area of the lake is one of four Integrated Monitoring areas established in Finland. Lead-210 dating reveals a period of increased sedimentation in the lake from 1920 to 1950. Increased atmospheric burden of several heavy metals in the order Pb > Cu> Zn > Ti = Al > Cr = Ni = V is recorded. The first to expand during the 19th century is Pb, whilst V increases after 1950. Sedimentary chlorophyll derivatives expand in the early part of the 20th century. Assemblages of diatoms and Cladocera were also changed somewhat during this time, but water quality seems not to have varied much: e.g. the diatom-inferred pH has remained in the range 6.4–6.8 (with a slight decrease) throughout the period of study.     

How large an area of sea do Helgoland seabirds use for foraging during the breeding season?

Conclusions Of the species examined, only the guillemot remained within the study area, while other species ranged much further from the colony to forage. The number of guillemots present at sea was 2943±222 birds as calculated by Ordinary Kriging method (van der Meer & Leopold, in prep.). This corresponds to the number expected from the size of the colony and the attendance patterns of the birds (2889: Grunsky, 1992). Based on (1) metabolism of adults, (2) cost of egg production, (3) amount of food delivered to chicks, and (4) population parameters according to Grunsky (1992), we calculated the total energy consumption during the breeding season (cf. Cairns et al., 1992). The length of the breeding season was taken from 1st April (10 days before the first egg) to 16th June (mean day of leaving). In total, the guillemots used 1015 million kJ of energy to complete the 1991 breeding season. The diet (Grunsky, 1992) consisted, for 68.6%, of sandeel (7.8 kJ/g wet mass) and for 31.4%, of clupeoids (10.8 kJ/g), so in total 81 tonnes of sandeel and 37 tonnes of clupeoids were needed to support the colony of guillemots.     

The molecular structure of (20R)-20-phenyl-5-pregnene-3β,20-diol,an inhibitor of cholesterol conversion to pregnenolone

The crystal and molecular structure of (20R)-20-phenyl-5-pregnene-3β, 20-diol hemihydrate has been determined by X-ray analysis in order to establish the configuration and conformation at C(20). Interest in this compound was stimulated by its high affinity inhibitory binding to cytochrome P-450_SCC, the enzyme which catalyzes the biosynthesis of pregnenolone(3β-hydroxy-5-pregnen-20-one) from cholesterol. The results of the analysis suggest a possible conformation for the cholesterol side chain in the enzyme complex.     

Clinical and epidemiological aspects of human parvovirus B19 infection in an urban area in Brazil (Niterói city area,State of Rio de Janeiro,Brazil)

This study was designed to analyse the clinical and epidemiological data from human parvovirus B19 cases in a six-year study of rash diseases conduct in an urban area in Brazil (Niterói city area, State of Rio de Janeiro). A total of 673 patients with acute rash diseases were seen at two primary health care units and at a general hospital. A clotted blood sample was collected from all subjects at the time of consultation. Forty-nine per cent (330 cases) of the patients were negative for dengue, rubella and measles IgM or for low avidity IgG to HHV-6. Of these 330, 105 (31.8%) were identified as IgM positive to parvovirus B19 by using an antibody capture EIA. During the study period, three distinct peaks of parvovirus infection were detected, suggesting that the disease appears to cycle in approximately 4-5 years. B19 infection was characterized by variable combinations of fever, flu-like symptoms, arthropathy, and gastrointestinal symptoms. Frequency of fever and arthropathy was substantially higher in adults, 75% [chi2 (1 D.F.) = 11.39, p = 0.0007] and 62.5% [chi2 (1 D.F.) = 29.89, p = 0.0000], respectively. "Slapped-cheek" appearance and reticular or lace-like rash were seen in only 30.1% of the children. No adult presented this typical rash. The lack of the typical rash pattern in a large proportion of parvovirus B19 and the similarity of clinical manifestations to other rash diseases, specially to rubella, highlight the difficulty of diagnosing B19 infection on clinical grounds alone.     

Synthesis of 3′-deoxy-3′-carboxymethylnucleosides,precursors of oligonucleotides with an amide internucleoside bond

An improved method for the synthesis of 3-deoxy-3-carboxymethyl nucleosides was suggested. Oxidation of 5-O-benzoyl-1,2-O-isopropylidene-α-D-xylofuranose resulted in the 3-keto derivative, which was treated with triethylphosphonoacetate in the presence of sodium hydride to obtain the 3-deoxy-3-ethoxycarbonylmethylene derivative. Hydrogenation of the unsaturated compound proceeded strictly stereospecifically and gave the product with the ribo-configuration. Acetolysis of the resulting compound with AcOH-Ac₂O-CH₃SO₃H led to 1,2-di-O-acetyl-5-O-benzoyl-3-deoxy-3-ethoxycarbonylmethyl-D-ribofuranose, whose interaction with persilylated nucleic bases gave 3-deoxy-3-ethoxycarbonylmethylnucleosides in a total yield of 42–49% from the starting compound.     

Synthesis and application of an Nδ-acetyl-Nδ-hydroxyornithine analog: identification of novel metal complexes of deferriferrichrysin

Synthesis of Fmoc-protected N(δ)-acetyl-N(δ)-(tert-butoxy)-l-ornithine has revealed it to be a metal-chelating amino-acid precursor. This protected amino acid was compatible with the preparation of ferrichrome peptides by standard Fmoc-based solid-phase peptide synthesis. Evaluation of deferriferrichrysin for metal ion chelation revealed that zirconium(IV) and titanium(IV) formed complexes with deferriferrichrysin.     

What is the effect of climate change on marine fish biodiversity in an area of low connectivity,the Baltic Sea?

Aim Climate change could result in an increase in species richness because large‐scale biogeography suggests that more species could be gained from equatorial regions than may be lost pole‐ward. However, the colonization of newly available habitat may lag behind the rate dictated by climatic warming if there exists of a lack of connectivity between ‘donor’ and receiving areas. The objective of this study was to compare how regional warming affected the biodiversity of marine fish in areas that differed in their connectivity in the Baltic Sea. Location North‐east Atlantic, Kattegat and Baltic Sea. Methods The total species richness and the mean species richness from scientific surveys were related to changes in temperature and salinity. Changes in the extent of the distribution of individual fish species were related to the latitudinal distribution, salinity tolerance, maximum body size and exploitation status to assess to what extent climate change and fishing impacts could explain changes in species richness in the Baltic. Results Rising temperatures in the well‐connected Kattegat correlated to an increase in the species richness of fish, due to an increase in low‐latitude species. Unexpectedly, species richness in the poorly connected Baltic Sea also increased. However, the increase seems to be related to higher salinity rather than temperature and there was no influx of low‐latitude species. Main conclusions These results do not support the hypothesis that low‐connectivity areas are less likely to see increases in species richness in response to warming. This indicates that the effect of climate change on biodiversity may be more difficult to predict in areas of low connectivity than in well‐connected areas.     

Effects of selenium and α-tocopherol on liver damage induced by feeding grains from an endemic area of Keshan disease in rats

Previous studies have shown the pathogenic effects of grains cultivated in the endemic areas of Keshan disease and selenium is effective in the prevention of this disease. In this study, liver damages induced by feeding grains from an endemic area (endemic diet), and the effects of selenium and -tocopherol supplement were examined. After 3 months on the endemic diet, the amounts of serum enzymes were significantly increased when compared to controls (animals receiving diet from a non-endemic area). Liver enzymes (alkaline phosphatase and choline esterase) were also found to be altered in the serum, further suggesting liver damages in animals on an endemic diet. Supplement of the endemic diet with selenium or -tocopherol reversed the changes in serum enzymes. Increase in lipid peroxidation in the liver of animals on the endemic diet was observed when compared to that in control animals. Selenium and -tocopherol supplements prevented the increase in lipid peroxidation in the liver by the endemic diet. Semi-quantitative histochemical analysis of glutamate dehydrogenase and succinate dehydrogenase in liver tissue showed that the livers of animals on an endemic diet were more sensitive to ischemic damagesin vitro. Supplementation of the endemic diet with either selenium or -tocopherol reduced the sensitivity to ischemic damages. The results suggest that increased lipid peroxidation in the liver of rats on an endemic diet may be responsible for liver damages and elevation of serum enzymes. Restoration of glutathione peroxidase activity by selenium supplement or an increase in the content of -tocopherol in the liver can prevent lipid peroxidation in animals on an endemic diet and thus provide the protective effects against liver damages.     

Structure and abundance of “interrhizon” invertebrates in an oxbow lake in the peat swamp area of Central Kalimantan,Indonesia

The faunal composition of “interrhizon” invertebrate communities associated with submerged parts of three kinds of macrophytes, Eichhornia crassipes, Gramineae spp. and Polygonum tomentosum, were studied in an oxbow lake, Lake Tundai, with acidic water (pH 3.9–4.4) in the peat swamp area of Central Kalimantan. The pH, turbidity, and chlorophyll-a concentration in the surface waters tended to be higher in macrophyte stands than in open waters near the stands. Thirty-one taxa belonging to three groups of invertebrates, Arachnida, Insecta, especially chironomids, and Isopoda, were found from the root systems, of which insects were the most abundant in every macrophyte stand. The interrhizon invertebrates accounted for 0.16–8.7 g wet wt m^?2 among three vegetational stands. The diversity and abundance of interrhizon invertebrates are low in Lake Tundai; this could be due to low pH and/or low productivity in the lake water.     

Do low standing biomass and leaf area index of sub-tropical coastal dunes ensure that plants have an adequate supply of water?

Water status in relation to standing biomass and leaf area indices (LAI) of the subtropical foredune species Arctotheca populifolia, Ipomoea pes-caprae and Scaevola plumieri were studied in the Eastern Cape, South Africa. The plants showed little evidence of water stress, never developing leaf water potentials more negative than –1.55 MPa, a value which is typical of mesophytes rather than xerophytes. The plants showed no seasonal changes in osmotic potential, an indication that they did not need to osmoregulate, nor were there significant alterations in tissue elasticity. Turgor potential for the most part remained positive throughout the day or recovered positive values at night, a condition suitable for the maintenance of growth that may be essential to cope with sand accretion. All three species show relatively high transpiration rates and only I. pes-caprae showed any evidence of strong limitations of transpiration rate through reductions in midday stomatal conductance. All three species had relatively high instantaneous water use efficiencies as a result of high assimilation rates rather than low transpiration rates. Simple water budgets, accounting for losses by transpiration and inputs from rainfall, suggest that the water stored in the dune sands is sufficient to meet the requirements of the plants, although water budgets calculated for I. pes-caprae suggest that this species may on occasion be water limited. The results suggest that it is the low biomass and LAI that lead to these favourable water relations.     

Isolation and characterization of an ω3-desaturation-defective mutant of an arachidonic acid-producing fungus,Mortierella alpina 1S-4

A mutant considered to be defective in the conversion of n-6 to n-3 fatty acids (3-desaturation) was derived from a 5-desaturation-defective mutant (Mut44) of Mortierella alpina 1S-4, after treating its spores with N-methyl-N-nitro-N-nitrosoguanidine. This mutant cannot produce 8(Z),11(Z),14(Z),17(Z)-eicosatetraenoic acid or any other n-3 fatty acids, of which about 10% was found in its parental strain upon cultivation at 12°C. The mutant's growth rate was comparable to that of the parental strain when grown at 28°C, but it became much slower when the mutant grew at 12°C, at which the lag phase for Mut44 was about 2 d but 5 d for the mutant.Abbreviations 18:33 9(Z),12(Z),15(Z)-octadecatrienoic acid - 18:43 6(Z),9(Z),12(Z),15(Z)-octadecatetraenoic acid - 20:43 8(Z),11(Z),14(Z),17(Z)-eicosatetraenoic acid - AA arachidonic acid - DHGA dihomo--linolenic acid - EPA 5(Z),8(Z),11(Z),14(Z),17(Z)-eicosapentaenoic acid - GLC gas-liquid chromatography - MNNG N-methyl-N-nitro-N-nitrosoguanidine - PC phosphatidylcholine