Spatial and temporal growth dynamics of Barrier Island shrub thickets

Spatial and temporal dynamics of barrier island shrub thickets were investigated on Hog Island, a barrier island along the Eastern Shore peninsula of Virginia. The island thickets are dominated by the actinorhizal shrub, Myrica cerifera. On the accreting, northern half of the island, thickets expanded as swale area increased. Analysis of aerial photographs revealed that total thicket area increased by nearly 400% from 1949 to 1989, paralleling a substantial increase in area for the northern portion of the island. Thicket characteristics varied with the age and position of the three field sites on Hog Island. At the youngest site examined (20 yr), recruitment and shrub growth were high. Shrub growth remained high and recruitment continued in the stable central portions of the island (50 yr). However, at the oldest site near a bay side salt marsh (≈130 yr), recruitment was not evident, shrub growth was reduced, and mortality was most apparent. Several “life stages” for shrub thickets were identified relative to island accretion. After the stabilization of new land, seedlings establish and grow rapidly to form a thicket. Once established, a thicket rapidly expands in the relatively protected, mesic swale environment. Thicket decline follows, characterized by an increase in vine growth on and around the shrubs and the formation of gaps as the thicket breaks up. Spatial variation in M. cerifera thickets on Hog Island is related to length of time soils have been stabilized and, especially, to time since thicket establishment.     

Role of carbon monoxide dehydrogenase in acetate synthesis by the acetogenic bacterium, Acetobacterium woodii

Carbon monoxide dehydrogenase (CODH) plays a key role in acetate synthesis by the acetogenic bacterium, Clostridium thermoaceticum. Acetobacterium woodii, like C. thermoaceticum contains high levels of CODH. In this work we show that crude extracts of A. woodii synthesize acetate from methyl tetrahydrofolate or methyl iodide, carbon monoxide and coenzyme A (CoA). The purified CODH from A. woodii catalyzes an exchange reaction between CO and the carbonyl group of acetyl-CoA even faster than the C. thermoaceticum enzyme, indicating the CODH of A. woodii, like that of C. thermoaceticum is an acetyl-CoA synthetase. Fluorescence and EPR studies further support this postulate by demonstrating that CODH binds CoA near the CO binding site involving a tryptophan residue. The UV absorption spectra and the amino acid compositions of A. woodii and C. thermoaceticum CODHs are very similar. Evidence is presented using purified enzymes from A. woodii that the synthesis of acetyl-CoA occurs by a pathway similar to that utilized by C. thermoaceticum.     

Carbon limitation leads to suppression of first year oak seedlings beneath evergreen understory shrubs in Southern Appalachian hardwood forests

Inhibition of canopy tree recruitment beneath thickets of the evergreen shrubs Rhododendron maximum L. and Kalmia latifolia L. has long been observed in Southern Appalachian forests, yet the mechanisms of this process remain unresolved. We present a first-year account of suppression of oak seedlings in relation to Rhododendron and Kalmia basal area, light and resource availability, seedling performance and the rates of seedling damage (i.e., herbivory). We found no evidence of first-year seedling suppression or significant resource deficiencies beneath thickets of K. latifolia in mature mixed hardwood stands. Suppression beneath R. maximum was apparent during the first growing season. We found that seedling biomass, light availability prior to canopy closure, and seedling tissue C:N ratios were negatively correlated with R. maximum basal area. Basal area of R. maximum was positively correlated with seedling mortality rates, soil [Al], and early-growing season leaf herbivory rates. Seedling growth was positively correlated with light and tissue C:N, while negatively correlated with soil [Al]. Overall, our results support the inhibition model of shade-mediated carbon limitation beneath dense understory shrubs and indicate the potential importance of herbivory and aluminum toxicity as components of a suppression mechanism beneath R. maximum thickets. We present a causal model of first year inhibition beneath R. maximum in the context of our findings and the results of prior studies.     

Rain forest expansion mediated by successional processes in vegetation thickets in the Western Ghats of India

Aim The objective of this study was to document succession from grassland thickets to rain forest, and to provide evidence for their potential as restoration tools. Location The Linganamakki region (State of Karnataka) of the Central Western Ghats of India. Method We selected thirty vegetation thickets ranging from 4 to 439 m² in area in the vicinity of rain forest. The area of each small thicket was estimated as an oval using its maximum length and its maximum width. When the shape was irregular (mostly in large thickets) the limits of the thicket were mapped and the area calculated from the map. Plant species were identified, the number of individuals was estimated and their heights measured. Results There was a progression in the thickets from early to late successional species. Small thickets were characterized by ecotone species and savanna trees such as Catunaregam dumetorum. Savanna trees served as a nucleus for thicket formation. Colonizing species were mostly bird‐dispersed. As succession proceeded in larger thickets, the proportion of evergreen, late‐successional rain forest trees increased. The species composition of the large thickets differed depending on the species composition of reproductive adults in the nearby forested areas. The species within small thickets were also found in the large thickets. The nestedness in species composition suggested that species turnover was deterministic based on thicket size. Human disturbance (leaf and wood collection by the local populations) affected the species composition and the species–area relationship of thickets. Main conclusions Vegetation thickets are nodal centres for rain forest colonization within grasslands. They expand and replace savanna. Early successional bird‐dispersed species established around savanna trees followed by late‐successional rain forest trees dispersed from the nearby forest by birds. Restoration programmes that reproduce natural successional processes such as those observed in thickets will be more successful and less expensive than the methods currently being employed, where trees are individually planted in grassland. Wood harvesting is the only factor that prevents thicket growth and coalescence and hampers forest expansion.     

Effects of competition and litter on a carnivorous plant, Drosera capillaris (Droseraceae)

Although carnivorous plants are widely recognized as being generally restricted to open habitats, tests of the effects of competition on individual performance are extremely rare. In this study, I examined the effects of the removal of herbaceous and shrub canopies on seedling density and growth, survival, and reproduction of phytometers of a small insectivorous plant, Drosera capillaris (pink sundew). I also examined the distribution of this species in relation to the occurrence of woody species in a frequently burned wet savanna in southeastern Mississippi. Killing plants and removing dead biomass increased seedling density in both open areas and shrub thickets. The removal of dead biomass following herbicide application was critical to increasing densities of seedlings. Killing plants with herbicide without also clearing residual litter and standing dead was not sufficient to increase seedling densities in shrub thickets. Although the removal of the groundcover canopy strongly influenced the density of seedlings, it had very little effect on survival, growth, and reproduction of small phytometers during a single growing season. Survival of phytometers was greater in open areas than in shrub thickets, regardless of whether the groundcover canopy was removed. Densities of both seedlings and adults were greater in open areas away from shrub thickets than beneath the woody canopies of thickets and were negatively correlated with the leaf area index of groundcover vegetation. Results of this study show that the establishment of this carnivorous plant species is limited in part by the effects of litter on seedling density in both open areas and shrub thickets.     

Effect of solvents on obligately anaerobic bacteria

Growth of Acetobacterium woodii and Clostridium sporogenes was studied in the presence of water-immiscible solvents. Nitrogen purging, vacuum distillation or distillation under nitrogen were all suitable as methods to remove oxygen from the solvents, since growth rates and yields of A. woodii were unaffected in the presence of tetradecane which had been degassed by these methods. Varying the solvent volume from 20% to 80% of the culture volume had little effect on growth rate of A. woodii. A.woodii was relatively sensitive to organic solvents since growth was inhibited by alkanes with logP(octanol/water) values below 7.1. C. sporogenes was less solvent sensitive, since it grew without inhibition when the logP of the solvent was > or = 6.6. Nevertheless, both A. woodii and C. sporogenes were more sensitive to solvent polarity than aerobic bacteria.     

Carbonic anhydrase in Acetobacterium woodii and other acetogenic bacteria.

Acetobacterium woodii, Acetohalobium arabaticum, Clostridium formicoaceticum, and Sporomusa silvacetica were found to contain carbonic anhydrase (CA). Minimal to no CA activity was detected in Moorella thermoautotrophica, Moorella thermoacetica subsp. "pratumsolum," Sporomusa termitida, and Thermoanaerobacter kivui. Of the acetogens tested, A. woodii had the highest CA specific activity, approximately 14 U mg of protein(-1), in extracts of either glucose- or H2-CO2-cultivated cells. CA of A. woodii was cytoplasmic and was purified approximately 300-fold to a specific activity of 5,236 U mg of protein(-1). Intracellular acetate concentrations inhibited CA activity of A. woodii by 50 to 85%, indicating that intracellular acetate may affect in situ CA activity.     

Cross-Scale Patterns in Shrub Thicket Dynamics in the Virginia Barrier Complex

Abstract To interpret broad-scale erosion and accretion patterns and the expansion and contraction of shrub thickets in response to sea level rise for a coastal barrier system, we examined the fine-scale processes of shrub recruitment and mortality within the context of the influence of ocean current and sediment transport processes on variations in island size and location. We focused on Myrica cerifera shrub thickets, the dominant woody community on most barrier islands along the coastline of the southeastern USA. Observations suggest that M. cerifera, a salt-intolerant species, is increasing in cover throughout the Virginia barrier islands, yet rising sea level in response to climate change is increasing erosion and reducing island area. Our objective was to explain this apparent paradox using pattern–process relationships across a range of scales with a focus on ocean currents and sediment transport interacting with island characteristics at intermediate scales. Multi-decadal comparisons across scales showed a complex pattern. At the scale of the entire Virginia barrier complex, modest decreases in upland area were accompanied by large increases in shrub area. Responses were more variable for individual islands, reflecting inter-island variations in erosion and accretion due to differences in sediment transport via ocean currents. Several islands underwent dramatic shrub expansion. Only for within-island responses were there similarities in the pattern of change, with a lag-phase after initial shrub colonization followed by development of linear, closed canopy thickets. Understanding the fine-scale processes of shrub seedling establishment and thicket development, in conjunction with the influence of ocean currents and sediment transport, provides a framework for interpreting island accretion and erosion patterns and subsequent effects on shrub thicket expansion or contraction across scales of time and space.     

A sodium-stimulated ATP synthase in the acetogenic bacterium Acetobacterium woodii.

Experiments with resting cells of Acetobacterium woodii were performed to elucidate the coupling ion used by the ATP synthase. A. woodii synthesized ATP in response to an artificial delta pH, indicating the presence of a proton-translocating ATPase. On the other hand, a delta pNa, as well as a proton diffusion potential, could serve as a driving force for ATP synthesis with the latter strictly dependent on Na+. These results are indicative for the presence of a Na(+)-translocating ATP synthase in A. woodii.     

Transformation of tetra- and trichloromethane to CO2 by anaerobic bacteria is a non-enzymic process

Abstract Degradation of tetrachloromethane was examined in the three strictly anaerobic bacteria, Acetobacterium woodii, Desulfobacterium autotrophicum and Methanobacterium thermoautotrophicum When incubated under anaerobic conditions in reduced buffer, suspensions of each organism degraded CCl₄ by both reductive and substitutive mechanisms. The products formed included less-highly chlorinated methanes and CO₂. Cell-free extracts of A. woodii degraded tetrachloromethane in a manner similar to that in whole cells but at a lower rate (63 vs. 110 μkat/kg of protein). When M. thermoautotrophicum or A. woodii was autoclaved, reductive dechlorination was partly abolished, whereas substitutive dechlorination was retained. Trichloromethane was oxidized to CO₂ by both native and autoclaved cells of A. woodii . Halomethanes are thus degraded anaerobically by reductive, substitutive and oxidative mechanisms.     

A Na+-translocating pyrophosphatase in the acetogenic bacterium Acetobacterium woodii

The anaerobic acetogenic bacterium Acetobacterium woodii employs a novel type of Na(+)-motive anaerobic respiration, caffeate respiration. However, this respiration is at the thermodynamic limit of energy conservation, and even worse, in the first step, caffeate is activated by caffeyl-CoA synthetase, which hydrolyzes ATP to AMP and pyrophosphate. Here, we have addressed whether or not the energy stored in the anhydride bond of pyrophosphate is conserved by A. woodii. Inverted membrane vesicles of A. woodii have a membrane-bound pyrophosphatase that catalyzes pyrophosphate hydrolysis at a rate of 70-120 milliunits/mg of protein. Pyrophosphatase activity was dependent on the divalent cation Mg(2+). In addition, activity was strictly dependent on Na(+) with a K(m) of 1.1 mM. Hydrolysis of pyrophosphate was accompanied by (22)Na(+) transport into the lumen of the inverted membrane vesicles. Inhibitor studies revealed that (22)Na(+) transport was primary and electrogenic. Next to the Na(+)-motive ferredoxin:NAD(+) oxidoreductase (Fno or Rnf), the Na(+)-pyrophosphatase is the second primary Na(+)-translocating enzyme in A. woodii.     

Enhanced biotransformation of carbon tetrachloride by Acetobacterium woodii upon addition of hydroxocobalamin and fructose.

The objective of this study was to evaluate the effect of hydroxocobalamin (OH-Cbl) on transformation of high concentrations of carbon tetrachloride (CT) by Acetobacterium woodii (ATCC 29683). Complete transformation of 470 microM (72 mg/liter [aqueous]) CT was achieved by A. woodii within 2.5 days, when 10 microM OH-Cbl was added along with 25.2 mM fructose. This was approximately 30 times faster than A. woodii cultures (live or autoclaved) and medium that did not receive OH-Cbl and 5 times faster than those controls that did receive OH-Cbl, but either live A. woodii or fructose was missing. CT transformation in treatments with only OH-Cbl was indicative of the important contribution of nonenzymatic reactions. Besides increasing the rate of CT transformation, addition of fructose and OH-Cbl to live cultures increased the percentage of [(14)C]CT transformed to (14)CO(2) (up to 31%) and (14)C-labeled soluble materials (principally L-lactate and acetate), while decreasing the percentage of CT reduced to chloroform and abiotically transformed to carbon disulfide. (14)CS(2) represented more than 35% of the [(14)C]CT in the presence of reduced medium and OH-Cbl. Conversion of CT to CO was a predominant pathway in formation of CO(2) in the presence of live cells and added fructose and OH-Cbl. These results indicate that the rate and distribution of products during cometabolic transformation of CT by A. woodii can be improved by the addition of fructose and OH-Cbl.     

Nickel requirement of Acetobacterium woodii.

Growth of Acetobacterium woodii on H2 and CO2 rather than on fructose was dependent on nickel. Nickel-deprived cultures growing on fructose did not synthesize acetate from CO2; under these conditions hydrogen formation was used as the electron sink. The data indicate that nickel is involved in CO2 reduction to acetate in A. woodii.     

Maternal inheritance of plastids in Encephalartos Lehm. (Zamiaceae, Cycadales).

The mode of inheritance of chloroplast DNA has been determined in Encephalartos by employing a restriction fragment length polymorphism analysis of chloroplast DNA. Artificial F1 hybrids were produced between a female specimen of E. natalensis and a male specimen of E. woodii. The hybridization patterns of all hybrids correspond, in all cases, with that of E. natalensis, and are different from that of E. woodii, thus indicating the maternal inheritance of cpDNA in cycads.     

The Na(+)-F(1)F(0)-ATPase operon from Acetobacterium woodii. Operon structure and presence of multiple copies of atpE which encode proteolipids of 8- and 18-kda

Eight genes (atpI, atpB, atpE(1), atpE(2), atpE(3), atpF, atpH, and atpA) upstream of and contiguous with the previously described genes atpG, atpD, and atpC were cloned from chromosomal DNA of Acetobacterium woodii. Northern blot analysis revealed that the eleven atp genes are transcribed as a polycistronic message. The atp operon encodes the Na(+)-F(1)F(0)-ATPase of A. woodii, as evident from a comparison of the biochemically derived N termini of the subunits with the amino acid sequences deduced from the DNA sequences. The molecular analysis revealed that all of the F(1)F(0)-encoding genes from Escherichia coli have homologs in the Na(+)-F(1)F(0)-ATPase operon from A. woodii, despite the fact that only six subunits were found in previous preparations of the enzyme from A. woodii. These results unequivocally prove that the Na(+)-ATPase from A. woodii is an enzyme of the F(1)F(0) class. Most interestingly, the gene encoding the proteolipid underwent quadruplication. Two gene copies (atpE(2) and atpE(3)) encode identical 8-kDa proteolipids. Two additional gene copies were fused to form the atpE(1) gene. Heterologous expression experiments as well as immunolabeling studies with native membranes revealed that atpE(1) encodes a duplicated 18-kDa proteolipid. This is the first demonstration of multiplication and fusion of proteolipid-encoding genes in F(1)F(0)-ATPase operons. Furthermore, AtpE(1) is the first duplicated proteolipid ever found to be encoded by an F(1)F(0)-ATPase operon.     

天然林重建过程中单优箬叶竹灌丛对树木更新的影响

利用1996年在湖南省会同林区布置的20个1 hm~2的实验样地,以剔除或林下不含箬叶竹样地作为对照(C),保留箬叶竹作为处理(I),评估了天然林重建过程中林下单优箬叶竹灌丛形成对树种更新过程的影响.处理10a以后结果显示,箬叶竹灌丛盖度上升到95%.进一步通过2007年两种样地乔木多度、多样性、生物量以及物种组成等指标的测量表明,单优箬叶竹灌丛显著抑制了树种的存活与生长,18～390 cm高度级别的树种多度和多样性显著降低,尽管高度18 cm以下级别的幼苗以及成年树的多度和多样性没有显著下降,但是生物量从幼苗到成年树,处理样地普遍下降.幼苗、幼树、成年树地上部分生物量分别下降47.45%、39.87%、59.64%,地下部分生物量分别下降55.70%、46.08%、63.62%.NMS(非计量多元尺度法)排序进一步表明两种样地具有显著不同的树种组成,揭示两种样地处于不同的演替更新阶段.结果表明单优箬叶竹灌丛的形成能延缓树种更新的进程,因此天然林重建过程中应注意避免该类林下植被的出现.     

Spatial/temporal variations in shrub thicket soil seed banks on an Atlantic Coast barrier island

Potential species replacement within low-diversity shrub thicket communities was investigated for a Virginia barrier island. Seed bank species composition was quantified in a glasshouse study using soil samples collected beneath closed Myrica cerifera thickets, as well as from thicket gaps. Samples were collected from productive and aging thickets, corresponding to differences in soil age. These data were compared to species presently occurring within the thickets and gaps. Seedbank species composition was not indicative of current community composition for either the intact thickets or the gaps. Seed banks resembled a more pioneer community. Thirteen families, 23 genera, and 25 species were identified from the seed bank beneath the M. cerifera thickets. Four species were woody. The within-gap seed bank included 19 families, 30 genera, and 34 species. Eight species were woody. The current community included 21 families, 33 genera, and 36 species beneath the intact thickets as well as within the thicket gaps. Eighteen species were woody. The species richness of gaps was more than three times that of intact thickets. For low-diversity shrub thickets, gaps enhance species richness.     

A Bacterial Electron-bifurcating Hydrogenase

The Wood-Ljungdahl pathway of anaerobic CO(2) fixation with hydrogen as reductant is considered a candidate for the first life-sustaining pathway on earth because it combines carbon dioxide fixation with the synthesis of ATP via a chemiosmotic mechanism. The acetogenic bacterium Acetobacterium woodii uses an ancient version of the pathway that has only one site to generate the electrochemical ion potential used to drive ATP synthesis, the ferredoxin-fueled, sodium-motive Rnf complex. However, hydrogen-based ferredoxin reduction is endergonic, and how the steep energy barrier is overcome has been an enigma for a long time. We have purified a multimeric [FeFe]-hydrogenase from A. woodii containing four subunits (HydABCD) which is predicted to have one [H]-cluster, three [2Fe2S]-, and six [4Fe4S]-clusters consistent with the experimental determination of 32 mol of Fe and 30 mol of acid-labile sulfur. The enzyme indeed catalyzed hydrogen-based ferredoxin reduction, but required NAD(+) for this reaction. NAD(+) was also reduced but only in the presence of ferredoxin. NAD(+) and ferredoxin reduction both required flavin. Spectroscopic analyses revealed that NAD(+) and ferredoxin reduction are strictly coupled and that they are reduced in a 1:1 stoichiometry. Apparently, the multimeric hydrogenase of A. woodii is a soluble energy-converting hydrogenase that uses electron bifurcation to drive the endergonic ferredoxin reduction by coupling it to the exergonic NAD(+) reduction.     

Successional patterns on tropical inselbergs: A case study on the Nouragues inselberg (French Guiana)

A number of plant communities have been described on tropical inselbergs, known as hot spots of plant and animal biodiversity. However, few studies tried to question what drives seral processes in these harsh environments, submitted to natural hazards (violent storms, intense runoff and lightning strikes) which may destroy the vegetation cover and its accumulated organic matter. We analysed quantitative data from the granitic Nouragues inselberg (French Guiana) in order to discern how successional processes featured their variety. We showed that the transition from herbaceous carpets (bromeliaceous mats and grassy meadows) to woody vegetation (shrub thickets) was not conditioned by slope, but was truly successional. We also showed that there was a cycle of change in shrub thickets, reinitiated by the destruction of scrub vegetation by fire (lightnings), wood-destroying fungi and termites.     

Kenyan endemic bird species at home in novel ecosystem

Riparian thickets of East Africa harbor a large number of endemic animal and plant species, but also provide important ecosystem services for the human being settling along streams. This creates a conflicting situation between nature conservation and land‐use activities. Today, most of this former pristine vegetation is highly degraded and became replaced by the invasive exotic Lantana camara shrub species. In this study, we analyze the movement behavior and habitat use of a diverse range of riparian bird species and model the habitat availability of each of these species. We selected the following four riparian bird species: Bare‐eyed Thrush Turdus tephronotus, Rufous Chatterer Turdoides rubiginosus, Zanzibar Sombre Greenbul Andropadus importunus insularis, and the Kenyan endemic Hinde′s Babbler Turdoides hindei. We collected telemetric data of 14 individuals during a 2 months radio‐tracking campaign along the Nzeeu River in southeast Kenya. We found that (1) all four species had similar home‐range sizes, all geographically restricted and nearby the river; (2) all species mainly use dense thicket, in particular the invasive L. camara; (3) human settlements were avoided by the bird individuals observed; (4) the birds' movement, indicating foraging behavior, was comparatively slow within thickets, but significantly faster over open, agricultural areas; and (5) habitat suitability models underline the relevance of L. camara as suitable surrogate habitat for all understoreyed bird species, but also show that the clearance of thickets has led to a vanishing of large and interconnected thickets and thus might have negative effects on the population viability in the long run.