放线菌15个属中线型染色体和线型质粒的检测

在属于放线菌目 (Actinomycetales)链霉菌属 (Streptomyces)下的不同种中发现了约 5 0 0 0种抗生素和生理活性物质 ,其作用包括抗细菌、抗真菌、除草、杀虫、抗肿瘤和免疫抑制剂等[1 ] 。在属于放线菌目的红球菌属 (Rhodococcus)和诺卡氏菌属 (Nocardia)中有许多种可以降解多种工业有毒化合物 ,如苯酚、多卤联苯、脂环烃和硝基芳族等[2 ] 。一般细菌的染色体和质粒DNA为环型结构。近年来 ,人们利用脉冲电泳技术发现在链霉菌等少数细菌中存在线型结构的染色体和质粒[3] ,有的巨大线型质粒上还带有完整的抗生素生物合成基因簇[4 ]或降解多…     

The Evolution of Chromosome Arrangements in <Emphasis Type="Italic">Carex</Emphasis> (Cyperaceae)

Sedges (Carex: Cyperaceae) exhibit remarkable agmatoploid chromosome series between and within species. This chromosomal diversity is due in large part to the structure of the holocentric chromosomes: fragments that would not be heritable in organisms with monocentric chromosomes have the potential to produce viable gametes in organisms with holocentric chromosomes. The rapid rate of chromosome evolution in the genus and high species diversification rate in the order (Cyperales Hutch., sensu Dahlgren) together suggest that chromosome evolution may play an important role in the evolution of species diversity in Carex. Yet the other genera of the Cyperaceae and their sister group, the Juncaceae, do not show the degree of chromosomal variation found in Carex, despite the fact that diffuse centromeres are a synapomorphy for the entire clade. Moreover, fission and fusion apparently account for the majority of chromosome number changes in Carex, with relatively little duplication of whole chromosomes, whereas polyploidy is relatively important in the other sedge genera. In this paper, we review the cytologic and taxonomic literature on chromosome evolution in Carex and identify unanswered questions and directions for future research. In the end, an integration of biosystematic, cytogenetic, and genomic studies across the Cyperaceae will be needed to address the question of what role chromosome evolution plays in species diversification within Carex and the Cyperaceae as a whole.     

The effect of chromosome geometry on genetic diversity

Although organisms with linear chromosomes must solve the problem of fully replicating their chromosome ends, this chromosome configuration has emerged repeatedly during bacterial evolution and is evident in three divergent bacterial phyla. The benefit usually ascribed to this topology is the ability to boost genetic variation through increased recombination. But because numerous processes can impact linkage disequilibrium, such an effect is difficult to assess by comparing across bacterial taxa that possess different chromosome topologies. To test directly the contribution of chromosome architecture to genetic diversity and recombination, we examined sequence variation in strains of Agrobacterium Biovar 1, which are unique among sequenced bacteria in having both a circular and a linear chromosome. Whereas the allelic diversity among strains is generated principally by mutations, intragenic recombination is higher within genes situated on the circular chromosome. In contrast, recombination between genes is, on average, higher on the linear chromosome, but it occurs at the same rate as that observed between genes mapping to the distal portion of the circular chromosome. Collectively, our findings indicate that chromosome topology does not contribute significantly to either allelic or genotypic diversity and that the evolution of linear chromosomes is not based on a facility to recombine.     

A Survey of Karyological Phenomena in the Juncaceae with Emphasis on Chromosome Number Variation and Evolution

The order Poales is well known for the presence of holocentric chromosomes, agmatoploidy, symploidy, polyploidy and high variation in chromosome numbers among and within species and genera. The second largest family of this order, Cyperaceae, is very well characterized both karyologicaly and cytologicaly. On the other hand, a smaller family Juncaceae is not so widely investigated from this point of view. The currently known chromosome numbers of the species of all eight genera of the Juncaceae are presented and variation among them is explored. Distribution of diploids, agmatoploids, agmatopolyploids, polyploids, symploids and aneuploids in the family is discussed in the phylogenetic context. Luzula is the best explored group followed by Juncus and Oreojuncus. However, only very little is known for five other Southern hemisphere genera. Fifty-eight percent of taxa from the Juncaceae are still completely unknown. Three different series of chromosome counts have been found in the Juncaceae, one for Luzula (x?=?6), the second for Oreojuncus (x?=?15) and the third for Juncus (x?=?20) with many agmatoploid and aneuploid derivates. This outline summarizes current knowledge in chromosome count variation and karyological research in the family Juncaceae.     

Analysis of bleomycin- and cytosine arabinoside-induced chromosome aberrations involving chromosomes 1 and 4 by painting FISH

The genomic frequency of chromosomal aberrations obtained by chromosome painting is usually extrapolated from the observed frequency of aberrations by correcting for the DNA content of the labelled chromosomes. This extrapolation is based upon the assumption of random distribution of breakpoints from which aberrations are generated. However, the validity of this assumption has been widely questioned. While extensive investigations have been performed with ionizing radiation as chromosome breaking agent, little efforts have been done with chemical clastogens. In order to investigate interchromosomal differences in chemically-induced chromosome damage, we have used multicolour chromosome painting to analyse bleomycin-induced aberrations involving chromosomes 1 and 4, two chromosomes that differ in gene density. In addition, we have measured the effect of cytosine arabinoside upon the repair of bleomycin-induced DNA damage in chromosomes 1 and 4. Our results show that these chromosomes are equally sensitive to the clastogenic effect of bleomycin with a similar linear dose-effect relationship. However, the high gene density chromosome 1 appeared to be more sensitive to repair inhibition by Ara-C than chromosome 4. This enhanced sensitivity to repair inhibition in chromosome 1 could be mediated by preferential repair of open chromatin and actively transcribed regions.     

Chromosomal evolution of the Canidae. II. Divergence from the primitive carnivore karyotype

The Giemsa-banding patterns of chromosomes from the arctic fox (Alopex lagopus), the red fox (Vulpes vulpes), the kit fox (Vulpes macrotis), and the raccoon dog (Nyctereutes procyonoides) are compared. Despite their traditional placement in different genera, the arctic fox and the kit fox have an identical chromosome morphology and G-banding pattern. The red fox has extensive chromosome arm homoeology with these two species, but has only two entire chromosomes in common. All three species share some chromosomes with the raccoon dog, as does the high diploid-numbered grey wolf (Canis lupus, 2n = 78). Moreover, some chromosomes of the raccoon dog show partial or complete homoeology with metacentric feline chromosomes which suggests that these are primitive canid chromosomes. We present the history of chromosomal rearrangements within the Canidae family based on the assumption that a metacentric-dominated karyotype is primitive for the group.     

Localization of 5S RNA genes on chromosomes of plethodontid salamanders

Ribosomal 5S RNA, labelled with 125 I, was annealled to denatured spermatocyte chromosomes of salamanders from 11 different genera of the family Plethodontidae. The salamanders studied have genomes with 1, 2 or 3 gene clusters. Eleven sites are located interstitially on short chromosome arms; 3 are found interstitially on long arms; 5 sites are at centromeric regions and one is telomeric. — Salamanders from five genera of Neotropical plethodontids carry a 5S gene cluster on the short arm of a large asymmetric chromosome, presumably a linkage group that has remained stable since the divergence of these genera in Tertiary time. In Lineatriton lineola this short arm is heterochromatic during pachytene and it shows a high incidence of chiasma failure at the first meiotic metaphase, contrasting with the situation found in two other species. The localization and number of 5S gene sites is consistent with the proposed phylogeny of these Neotropical genera by Wake and Lynch (1976).     

Artificial chromosomes for antibiotic-producing actinomycetes

Bacteria belonging to the order Actinomycetales produce most microbial metabolites thus far described, several of which have found applications in medicine and agriculture. However, most strains were discovered by their ability to produce a given molecule and are, therefore, poorly characterized physiologically and genetically. Thus, methodologies for genetic manipulation of actinomycetes are not available and efficient tools have been developed for just a few strains. This constitutes a serious limitation to applying molecular genetics approaches to strain development and structural manipulation of microbial metabolites. To overcome this hurdle, we have developed bacterial artificial chromosomes (BAC) that can be shuttled among Escherichia coli, where they replicate autonomously, and a suitable Streptomyces host, where they integrate site-specifically into the chromosome. The existence of gene clusters and of genetically amenable host strains, such as Streptomyces coelicolor or Streptomyces lividans, makes this a sensible approach. We report here that 100 kb segments of actinomycete DNA can be cloned into these vectors and introduced into genetically accessible S. lividans, where they are stably maintained in integrated form in its chromosome.     

Conserved Synteny between Pig Chromosome 8 and Human Chromosome 4 but Rearranged and Distorted Linkage Maps

The porcine genes encoding interleukin 2, alcohol dehydrogenase (class I) gamma polypeptide, and osteopontin were mapped to chromosome 8 by linkage analysis. Together with previous assignments to this chromosome (the albumin, platelet-derived growth factor receptor A, and fibrinogen genes), an extensive syntenic homology with human chromosome 4 was discovered. Loci from about three-quarters of the q arm of human chromosome 4 are on pig chromosome 8. However, the linear order of the markers is not identical in the two species, and there are several examples of interspecific differences in the recombination fractions between adjacent markers. The conserved synteny between man and the pig gives strong support to a previous suggestion that a synteny group present in the ancestor of mammalian species has been retained on human chromosome 4q. Since loci from this synteny group are found on two cattle chromosomes, the bovine rearrangement must have occurred after the split of Suidae and Bovidae within Artiodactyla.     

Rate of Chromosome changes and Speciation in Reptiles

The chromosome changing rate (i.e. the number of chromosome rearrangements per million years) was studied in 1329 reptile species in order to evaluate the karyological evolutionary trend and the existence of possible correlations between chromosome mutations and some aspects of the evolution of this class. The results obtained highlight the existence of a general direct correlation between chromosome changing rate and number of living species, although different trends can be observed in the different orders and suborders. In turtles, the separation of pleurodires from cryptodires was accompanied by a considerable karyological diversification. Among pleurodires, the evolution of the Chelidae and Pelomedusidae was also characterised by chromosome variation, while in cryptodires a marked karyological homogeneity is observed between and within infraorders. Similarly there is no correlation between changing rate and species number in crocodiles, where the evolution of the families and genera has entailed few chromosome mutations. Chromosome variability was greater in lizards and snakes. In the formers variations in chromosome changing rate accompanied the separation of the infraorders and the evolution of most of the families and of some genera. The origin of snakes has also been accompanied by a marked karyological diversification, while the subsequent evolution of the infraorders and families has entailed a high level of chromosome variability only in colubroids. The karyological evolution in reptiles generally entailed a progressive reduction in chromosome changing rate, albeit with differences in the diverse orders and suborders. This trend seems to be consistent with the “canalization model” as originally proposed by Bickham and Baker in [Bickham, J.W. & R J. Baker, 1979. Bull. Carnegie Mus. Nat. Hist. 13: 70–84.]  However, several inconsistencies have been found excluding that in this class the ultimate goal of chromosome variations was the achievement of a so-called ``optimum karyotype' as suggested by the above-mentioned theory. Other mechanisms could underpin chromosome variability in Reptiles. Among them a genomic composition more or less favourable to promoting chromosome rearrangements and factors favouring the fixation of a mutant karyotype in condition of homozygosis. Turtles and crocodiles would have a genome characterised by large chromosomes and a low level of chromosome compartmentalisation limiting the recombination and the frequency of rearrangements. A low rate of chromosome variability modifying little if at all the gene linkage groups would have favoured a conservative evolutionary strategy. In the course of evolution, lizards and snakes could have achieved a genome characterised by smaller chromosomes and a higher level of compartmentalisation. This would have raised the frequency of recombination and consequently an evolutionary strategy promoting a higher degree of variability and a greater level of speciation.     

Localization on pig chromosome 6 of markers GPI, APOE, and ENO1, carried by human chromosomes 1 and 19, using in situ hybridization

In the pig, the linkage group around the halothane gene (HAL), composed of S-GPI-HAL-H-A1BG-PGD, has been assigned to bands p1.2----q2.2 of chromosome 6. In man, ENO1-PGD and APOE-GPI constitute two syntenic groups situated on different chromosomes (1 and 19, respectively). Since GPI and PGD are linked in the pig, we have hybridized the human cDNA probes for ENO1 and APOE to pig chromosomes. These markers were assigned to pig chromosome 6, in the q2.2----q2.4 and cen----q2.1 regions, respectively, using in situ hybridization. Since GPI and APOE are situated in the same region, we combined the use of high resolution chromosome analysis and in situ hybridization to give a more precise localization in the q1.2 and q1.2----q2.1.2 regions of chromosome 6. A possible linear order of these genes is proposed.     

Comparative genomic analysis of the Haloferax volcanii DS2 and Halobacterium salinarium GRB contig maps reveals extensive rearrangement.

Anonymous probes from the genome of Halobacterium salinarium GRB and 12 gene probes were hybridized to the cosmid clones representing the chromosome and plasmids of Halobacterium salinarium GRB and Haloferax volcanii DS2. The order of and pairwise distances between 35 loci uniquely cross-hybridizing to both chromosomes were analyzed in a search for conservation. No conservation between the genomes could be detected at the 15-kbp resolution used in this study. We found distinct sets of low-copy-number repeated sequences in the chromosome and plasmids of Halobacterium salinarium GRB, indicating some degree of partitioning between these replicons. We propose alternative courses for the evolution of the haloarchaeal genome: (i) that the majority of genomic differences that exist between genera came about at the inception of this group or (ii) that the differences have accumulated over the lifetime of the lineage. The strengths and limitations of investigating these models through comparative genomic studies are discussed.     

Karyotypes of some species of the genus Lessingianthus (Vernonieae,Asteraceae) and taxonomic implications

We determined the karyotypes of nine species of Lessingianthus, eight of which are here analyzed for the first time. The results include the first chromosome count for L. plantaginoides, which is tetraploid with 2n = 64. All species showed a high proportion of metacentric chromosomes combined with a lower proportion of submetacentric pairs. Only L. coriaceus had a subtelocentric chromosome pair. B chromosomes were observed in L. coriaceus and L. varroniifolius, which were subtelocentric. Differences among the karyotypes of the studied species were small, suggesting that karyotype diversity in the genus evolved by small changes in the structure of chromosomes. Karyotype features appear useful to distinguish Lessingianthus from the closely related genera Chrysolaena and Lepidaploa.     

Chromosome variation in protoplast-derived potato plants

Summary Chromosomes have been studied in protoplast-derived potato plants of the tetraploid cultivars Maris Bard and Fortyfold. A high degree of aneuploidy was found amongst the regenerants of both cultivars but the nature of the chromosome variation differed. The Maris Bard regenerants were characterised by high chromosome numbers, a wide range of aneuploidy (46–92) and a low percentage of plants with the normal chromosome number (2n = 48), whereas a much higher proportion of the Fortyfold regenerants had 48 chromosomes and the variants were within a more limited aneuploid range. In both cultivars chromosome variation was found between calluses, within calluses and even within shoot cultures. The origin of the chromosome variation and the differences found between the two cultivars are discussed.We regret to report the death of Emrys Thomas since the initiation of this work     

Two-component signal transduction systems in <Emphasis Type="Italic">Streptomyces</Emphasis> and related organisms studied using DNA comparative microarray analysis

Two component sensor-response regulator systems (TCSs) are very common in the genomes of the Streptomyces species that have been fully sequenced to date. It has been suggested that this large number is an evolutionary response to the variable environment that Streptomyces encounter in soil. Notwithstanding this, TCSs are also more common in the sequenced genomes of other Actinomycetales when these are compared to the genomes of most other eubacteria. In this study, we have used DNA/DNA genome microarray analysis to compare 14 Streptomyces species and one closely related genus to Streptomyces coelicolor in order to identify a core group of such systems. This core group is compared to the syntenous and non-syntenous TCSs present in the genome sequences of other Actinomycetales in order to separate the systems into those present in Actinomycetales in general, the Streptomyces specific systems and the species specific systems. Horizontal transfer does not seem to play a very important role in the evolution of the TCS complement analyzed in this study. However, cognate pairs do not necessarily seem to evolve at the same pace, which may indicate the evolutionary responses to environmental variation may be reflected differently in sequence changes within the two components of the TCSs. The overall analysis allowed subclassification of the orphan TCSs and the TCS cognate pairs and identification of possible targets for further study using gene knockouts, gene overexpression, reporter genes and yeast two hybrid analysis. Electronic supplementary material  The online version of this article (doi:) contains supplementary material, which is available to authorized users.     

Direct evidence for the non-random localization of mammalian chromosomes in the interphase nucleus

Indirect immunofluorescence staining with human anti-centromere autoantibodies from a patient (LU 851) suffering from the CREST form of scleroderma was used to analyse chromosome topology in interphase nuclei of rat-kangaroo (PTO) and Indian muntjac (IM) cells. In some cells, centromeres were arranged in pairs suggesting association of homologous chromosomes. Clustering of centromeres at one pole of the nucleus (Rabl configuration) and other patterns suggesting higher order organization were also observed. In one fifth of the IM cells it was possible to identify the intranuclear location of each single chromosome on the basis of the morphology of the immunostained centromeres. In 30% of the IM cells in which centromeres could be identified, homologous chromosomes occupied adjacent territories within the interphase chromatin.     

Karyotype analysis and achiasmatic meiosis in pseudoscorpions of the family Chthoniidae (Arachnida: Pseudoscorpiones)

Karyotypes of pseudoscorpions (Arachnida, Pseudoscorpiones) are largely unknown. Here we describe for the first time karyotypes of the suborder Epiocheirata, represented by 9 European species of two genera of Chthoniidae, Chthonius and Mundochthonius. Diploid chromosome numbers of males range from 21 to 37. Karyotypes of both genera differ substantially. Acrocentric chromosomes predominate in karyotypes of the genus Chthonius, whereas M. styriacus exhibits a predominance of metacentric chromosomes. These differences suggest that the two genera belong probably to distant branches of the family Chthoniidae. It is proposed that karyotype evolution of the genus Chthonius was characterised by a reduction of chromosome numbers by tandem and centric fusions as well as gradual conversion of acrocentric chromosomes to biarmed ones, mostly by pericentric inversions. A tendency towards reduced chromosome numbers is evident in the subgenus Ephippiochthonius. All species display X0 sex chromosome system that is probably ancestral in pseudoscorpions. The X chromosome exhibits conservative morphology. It is metacentric in all species examined, and in the majority of them, a subterminal secondary constriction was found at one of its arms. In contrast to chthoniids, secondary constriction was not reported on sex chromosomes of other pseudoscorpions. Analysis of prophase I chromosomes in males revealed an achiasmatic mode of meiosis. Findings of the achiasmatic meiosis in both genera, Chthonius and Mundochthonius, indicate that this mode of meiosis might be characteristic of the family Chthoniidae. Amongst arachnids, achiasmatic meiosis has only been described in some scorpions, acariform mites, and spiders.     

Chromosome numbers, sex determining systems, and patterns of the C-heterochromatin distribution in 13 species of lace bugs (Heteroptera, Tingidae).

The karyotypes, sex chromosome systems, and male meiotic patterns in 13 species belonging to 10 genera of the family Tingidae were studied. Data on eleven species, one subgenus, and 5 genera are presented for the first time, and the chromosome formula of Acalypta parvula is revised. Karyotypes of all species included six pairs of autosomes. Most of the species displayed an XY sex chromosome system, in four species, belonging to genera of Acalypta and Kalama, the X0 system was found. Male meiosis is chiasmatic for autosomes. Sex chromosomes are achiasmatic and undergo pre-reductional meiosis. Using C-banding technique, for the first time constitutive heterochromatin was localized on chromosomes in all the species studied. The heterochromatin was found either in telomeres or in some species in interstitial locations, evidencing that a quite substantial redistribution of chromosome material within chromosomes might occur without fragmentations or fusions. In two species, a supernumerary (B) chromosome was found. In addition, the male reproductive system of four species was examined and the number of testicular follicles was determined as two per testis.     

Relationship between Chromosome 9 of Maize and Wheat Homeologous Group 7 Chromosomes

Comparison of the genetic map of maize chromosome 9 with maps of wheat chromosomes has revealed a high degree of colinearity between maize chromosome 9 and the group 4 and 7 chromosomes of wheat. The order of DNA markers on the short arm and a proximal region of the long arm of the genetic map of maize chromosome 9 is highly conserved with the marker order on the short arm and proximal region of the long arm of the genetic maps of the wheat homeologous group 7 chromosomes. A major part of the long arm of the genetic map of maize chromosome 9 is homeologous with a short segment in the proximal region of the long arm of the genetic map of the wheat group 4 chromosomes. Evidence is also presented that maize chromosome 9 has diverged from the wheat group 7 chromosomes by both a pericentric and a paracentric inversion. The paracentric inversion is probably unique to maize among the major cereal genomes.