Effects of Progressive Clearcut Logging on Newfoundland Caribou

Abstract: Logging has often been implicated in the decline of caribou (Rangifer tarandus), but its effects are incompletely understood. We used a distance-based approach to assess the effects of progressive clearcut logging on the summer (28 May to 15 Sep) range of caribou in Newfoundland, Canada. We compared distances of random locations and of caribou, from 9 years of radiotelemetry, to landcover types across 3 spatial scales: population range, individual ranges, and radiolocations. We tested for incremental avoidance of cutovers and mature softwood forests, the preferred type for caribou and forest harvesting, while controlling for the confounding effects of each. At the individual range, females selected for hardwood and softwood forests, bogs, and barrens, and they avoided open water. Patterns for males were similar, although they avoided bogs and barrens at both scales. The sexes differed in their response to forest harvesting. Females progressively avoided cutovers, both pre- and postharvest, likely due to their spatial proximity. Females maintained an average of 9.2 km from active cutovers. Cutover avoidance was evident even if we controlled statistically for distances to other habitats, and it accounted for heightened disuse of softwood forests. Compared with females, males occurred in proximity, with no incremental response to clearcutting. These results imply deleterious effects of timber harvesting on female caribou. Long-term investigations will enhance our capacity to evaluate such anthropogenic habitat changes.     

Mechanisms and genetic diversity for host plant resistance to spotted stem borer,Chilo partellus in sorghum,Sorghum bicolor

Levels of resistance to spotted stem borer, Chilo partellus, in the germplasm are low to moderate and therefore we evaluated 25 sorghum genotypes for resistance to stem borer to identify lines with diverse mechanisms of resistance to this insect. Leaf glossiness was significantly and negatively associated with low deadheart formation. Dwarf genotypes with fewer nodes showed more deadheart formation. Antixenosis and/or antibiosis for leaf feeding, and reduced deadheart formation, tunnelling, and number of exit holes resulted in lower losses owing to C. partellus damage. Axillary tillers compensated for loss in grain yield owing to borer infestation as a result of deadheart formation, but their synchrony for maturity with the main plant is quite important. Path coefficient analysis revealed that direct effects of stem tunnelling on loss in grain yield were greater than leaf feeding and deadhearts. However, leaf feeding via stem tunnelling showed maximum indirect effects on loss in grain yield. Estimates for broad‐sense heritability and genetic advance suggested that it is possible to improve for grain yield under stem borer infestation. Heritability estimates for grain yield were usually higher than for stem borer damage parameters. Multi‐trait cluster analysis placed the test genotypes into four and five clusters in rainy and post‐rainy seasons, respectively. The genotypes placed in different groups, and showing resistance to leaf feeding, deadheart formation, stem tunnelling, and/or compensation in grain yield can be used for sorghum improvement.     

Rational Preselection from Hamadryas to Homo Sapiens: The Place of Decisions in Adaptive Process

Normally biological and sociocultural evolution are explained in terms of blind variation and selective retention. This theory avoids intrinsic teleological fallacies but fails to account for a type of purposive behavior that is both distinctive and adaptively significant. The preselective hypothesis advanced here asserts that certain highly social animals including Homo sapiens are able to anticipate complex evolutionary problems. They may then beat natural selection to the draw by making their own deliberate adaptive choices, where the advantage of doing so is perceptually obvious. Such decisions occur both at the individual level and through political processes at the group level. Especially in group preselection, the result is an adaptive mechanism of unparalleled flexibility and rapidity of action, one very inadequately accounted for by ethnologists. Implications are suggested for ethology, archaeology, and ethnology in terms of redefining culture and revising models of cultural adaptation and evolution to make the study of process more effective . [evolutionary theory, cultural ecology, decision process, ethology, cognition]     

Evolution of arboreal tunnelling by larvae of Aenetus (Lepidoptera: Hepialidae)

Abstract

Aspects of larval feeding and tunnelling were described for seven species of the wood-boring genus Aenetus. The species were studied in Australia, New Caledonia, and New Zealand. A sequential pattern of larval feeding involving transfer from a fungal based diet to callus tissue in live trees, previously known for A. virescens, was confirmed for A. cohici and inferred for A. dulcis and A. paradiseus. A specialised “transfer” morph linking the two feeding stages in A. virescens was also confirmed for A. cohici and two unidentified species. The wood-boring habit involved entry into the host above ground level and the construction of a tunnel which extends into and then down the stem. Tunnels were often located on the lower surface of leaning branches or stems. Tunnel entrances were open to the host surface, but overlain by a silk- /frass web. Bark and underlying tissue were removed from around the tunnel entrance and a callus growth resulted, which the larva consumed. The evolutionary history of arboreal tunnelling in the Hepialidae was investigated using biogeographic analysis of generic distribution. It is argued that evolution and variation in arboreal tunnelling resulted from specialised recombinations of generalised ancestral characters. It is suggested that the study of arboreal tunnelling can provide a source of useful characters for systematic analysis of phylogenetic relationships within Aenetus. The potential systematic value of tunnel characters is illustrated for A. virescens.     

Allocation of S in Generative Growth of Soybean

Soybean plants (Glycine max L. Merr) were grown with 100 [mu]M S and 15 mM N and studied with respect to S allocation during grain development. The grains accounted for 87% of the S taken up after d 42, the balance coming from internal redistribution of S from leaves and pods. Detailed studies of the leaves, pods, and grains associated with leaf axils 6 and 7 showed that sulfate accumulated in the pods as they expanded to 50% of full length, ahead of grain enlargement, but declined to very low levels as grain growth commenced. Conversely, homoglutathione (hGSH), cysteine, and methionine increased. In developing grains, hGSH accounted for 60 to 90% of the soluble-S but sulfate was barely detectable. The data are consistent with a model in which, under S-limiting conditions, the pods act as sinks for sulfate and grain growth initiates the assimilation of sulfate into hGSH in the pods, and then into developing grains, where it is incorporated into grain proteins.     

Do blind cavefish have behavioral specializations for active flow-sensing?

Blind cavefish use a form of active sensing in which burst-coast swimming motions generate flow signals detected by the lateral line. To determine if blind cavefish have evolved behavioral specializations for active flow-sensing, including the ability to regulate flow signal production through lateral line feedback, the swimming kinematics of blind and sighted morphs of Astyanax were compared before and after 24?h of familiarization with a novel, dark environment and with and without lateral line functionality. Although both morphs showed little difference in the vast majority of kinematic parameters measured, blind morphs differed significantly from sighted morphs in having a much higher incidence of swim cycle sequences devoid of sharp turns. Both lateral line deprivation and familiarization with the arena led to significant declines in this number for blind, but not sighted morphs. These findings suggest that swimming kinematics are largely conserved, but that blind morphs have nevertheless evolved enhanced abilities to use lateral line feedback when linking swim cycles into continuous, straight trajectories for exploratory purposes. This behavioral specialization can best be understood in terms of the intermittent and short-range limitations of active flow-sensing and the challenges they pose for spatial orientation and navigation.     

Folding of VemP into translation-arresting secondary structure is driven by the ribosome exit tunnel

The ribosome is a fundamental biomolecular complex that synthesizes proteins in cells. Nascent proteins emerge from the ribosome through a tunnel, where they may interact with the tunnel walls or small molecules such as antibiotics. These interactions can cause translational arrest with notable physiological consequences. Here, we studied the arrest caused by the regulatory peptide VemP, which is known to form α-helices inside the ribosome tunnel near the peptidyl transferase center under specific conditions. We used all-atom molecular dynamics simulations of the entire ribosome and circular dichroism spectroscopy to study the driving forces of helix formation and how VemP causes the translational arrest. To that aim, we compared VemP dynamics in the ribosome tunnel with its dynamics in solution. We show that the VemP peptide has a low helical propensity in water and that the propensity is higher in mixtures of water and trifluorethanol. We propose that helix formation within the ribosome is driven by the interactions of VemP with the tunnel and that a part of VemP acts as an anchor. This anchor might slow down VemP progression through the tunnel enabling α-helix formation, which causes the elongation arrest.     

AN INTERPRETATION OF THE HYDRODYNAMICS OF POLLEN

The pollen grains of angiosperms are usually desiccated to some extent at the time of dispersal. Rehydration is an essential prelude to germination, and this takes place by uptake of water from the stigma after capture, water entering from the cells of the stigma surface following a water potential gradient. The passage of water into the pollen grain is regulated by the cuticle of the stigma papilla in the vicinity of the contact face, and also by the apertural mechanisms of the pollen grain exine, which act by varying the degree of exposure of the underlying pectocellulosic intine according to the degree of hydration of the grain. The sequence of events during rehydration suggests that at first the vegetative cell of the male gametophyte is without a normal plasmalemma, so that the initial dilation of the grain is followed by an interval of exudation. Thereafter, with the re-establishment of the cell membranes, the vegetative cell behaves in the manner of a normal plant cell through the period of germination.     

A comparative tunnelling network approach to assess interspecific competition effects in termites

We study the tunnelling network dynamics of two morphologically and ecologically very similar native termite species from the Brazilian Cerrado, Cornitermes cumulans and Procornitermes araujoi, both when they are digging alone or when their tunnel networks can meet. Their network topologies have the same geometrical properties with only slight differences in digging speed and branching rates. Petri dish laboratory assays show that the two species have a strong potential for interference competition. However, encounters between the two tunnelling networks produce no measurable effect on the level of the total network growth dynamics. A brief fighting erupts in the meeting zone with some increased mortality and territorial gains or losses on both sides. This aggressive encounter is quickly ended by walling off the gap between the two networks. Tunnel speed analysis of the last 5 mm before an encounter shows some evidence that at least one species, P. araujoi, detects the presence of the competitor even before actually breaking into their tunnels. We compare these results to those found in invasive termite species and discuss them in the species’ ecological context: their strategies might be linked to the well-known r- and K-strategy concept.     

Distribution, settlement, and growth of first-year individuals of the shipworm Teredo navalis L. (Bivalvia: Teredinidae) in the Port of Rotterdam area, the Netherlands

During the period 2004-2008 the distribution, settlement, and growth of first-year shipworms (Teredo navalis L., 1758) was studied by exposing fir and oak panels in the Port of Rotterdam area, which is situated in the Rhine-Meuse estuary in the Netherlands and covers the complete salinity gradient. Shipworms were found yearly in the western large polyhaline harbours. On only a few occasions were they were found in harbours that showed large seasonal and daily fluctuations in salinity. In 2006 the shipworm was found in fir panels 20 km upstream from the polyhaline harbours, demonstrating their ability to travel with the tidal currents over considerable distances and to settle once the abiotic conditions become favourable. Although the water temperatures allowed them to breed from April until November, infestations were not found before September, and from the size of the animals in the panels it was concluded that in the Port of Rotterdam area they spawned from August until the end of November. The settlement height was negatively correlated with the distance of the panels to the sea floor. In the first season after settlement they showed a substantial growth rate of 0.18 cm day⁻¹. The longest shipworm found measured 36.8 cm after 4-5 months of growth after settlement. Infestations and growth were lower in oak than in fir wood. In 2006 the maximum consumption of wood by individuals settled in the same year in panels at the bottom accounted for 12.4%. Shell size and body length of the animal after the first season of growth showed a significant positive logarithmic relation. In both 2006 and 2007 a similar relation between the average boring tube diameter and the length of the animals was found. Lower river discharges leading to salinisation of the eastern part of the Port of Rotterdam area create conditions favourable for the shipworm, with serious consequences for the piles upon which the quays are built.     

Occurrence of “mammalian” lignans in plant and water sources

Enterolignans, also called “mammalian” lignans because they are formed in the intestine of mammals after ingestion of plant lignans, were identified for the first time in extracts of four tree species, i.e., in knot heartwood of the hardwood species Fagus sylvatica and in knot or stem heartwood of the softwood species Araucaria angustifolia, Picea smithiana, and Abies cilicia. They were also identified for the first time in grain extracts of cultivated plants, i.e., in 15 cereal species, in 3 nut species, and in sesame and linseeds. Furthermore, some plant lignans and enterolignans were identified in extracts of water from different sources, i.e., in sewage treatment plant influent and effluent and in humic water, and for the first time also in tap and seawater. They were present also in water processed through a water purification system (ultrapure water). As enterolignans seem to be abundant in the aquatic environment, the occurrence of enterolignans in plant sources is most likely due to uptake by the roots from the surrounding water. This uptake was also shown experimentally by treating wheat (Triticum aestivum ssp. vulgare) seeds with purified lignan-free water spiked with enterolactone (EL) during germination and growth. Both the remaining seeds and seedlings contained high EL levels, especially the roots. They also contained metabolites of EL, i.e., 7-hydroxy-EL and 7-oxo-EL.     

贵州独山中泥盆世动藻迹生态习性探讨

贵州独山中泥盆统产有丰富的遗迹化石Zoopkycos,现从其产出的特征和古生态等方面对其生活习性进行探讨。认为分布于静水、贫氧、有机质丰富环境的Zoopkycos为螺旋向上的内生觅食构造;边缘管一端通过中央通道与海水相通,呈“J”形;蹼状构造系造迹生物觅食区域的扩大、边缘管增大而形成;同一个体的Zoopkycos可以分出许多的与蹼状构造变化规律相近的、具同一边缘管的觅食序列(food-system),每一觅食序列的边缘管具有一端向上与中央通道相通,另一端向下与相邻觅食序列的边缘管相联;螺旋的疏密、大小与相对沉积速度有关。产于独山地区中泥盆统的Zoopkycos的造迹生物可能是星虫类(sipunculids)。     

Non-bulk-like solvent behavior in the ribosome exit tunnel

As nascent proteins are synthesized by the ribosome, they depart via an exit tunnel running through the center of the large subunit. The exit tunnel likely plays an important part in various aspects of translation. Although water plays a key role in many bio-molecular processes, the nature of water confined to the exit tunnel has remained unknown. Furthermore, solvent in biological cavities has traditionally been characterized as either a continuous dielectric fluid, or a discrete tightly bound molecule. Using atomistic molecular dynamics simulations, we predict that the thermodynamic and kinetic properties of water confined within the ribosome exit tunnel are quite different from this simple two-state model. We find that the tunnel creates a complex microenvironment for the solvent resulting in perturbed rotational dynamics and heterogenous dielectric behavior. This gives rise to a very rugged solvation landscape and significantly retarded solvent diffusion. We discuss how this non-bulk-like solvent is likely to affect important biophysical processes such as sequence dependent stalling, co-translational folding, and antibiotic binding. We conclude with a discussion of the general applicability of these results to other biological cavities.     

Dissecting the nonlinear response of maize yield to high temperature stress with model‐data integration

Evidence suggests that global maize yield declines with a warming climate, particularly with extreme heat events. However, the degree to which important maize processes such as biomass growth rate, growing season length (GSL) and grain formation are impacted by an increase in temperature is uncertain. Such knowledge is necessary to understand yield responses and develop crop adaptation strategies under warmer climate. Here crop models, satellite observations, survey, and field data were integrated to investigate how high temperature stress influences maize yield in the U.S. Midwest. We showed that both observational evidence and crop model ensemble mean (MEM) suggests the nonlinear sensitivity in yield was driven by the intensified sensitivity of harvest index (HI), but MEM underestimated the warming effects through HI and overstated the effects through GSL. Further analysis showed that the intensified sensitivity in HI mainly results from a greater sensitivity of yield to high temperature stress during the grain filling period, which explained more than half of the yield reduction. When warming effects were decomposed into direct heat stress and indirect water stress (WS), observational data suggest that yield is more reduced by direct heat stress (?4.6 ± 1.0%/°C) than by WS (?1.7 ± 0.65%/°C), whereas MEM gives opposite results. This discrepancy implies that yield reduction by heat stress is underestimated, whereas the yield benefit of increasing atmospheric CO₂ might be overestimated in crop models, because elevated CO₂ brings yield benefit through water conservation effect but produces limited benefit over heat stress. Our analysis through integrating data and crop models suggests that future adaptation strategies should be targeted at the heat stress during grain formation and changes in agricultural management need to be better accounted for to adequately estimate the effects of heat stress.     

The influence of soil heterogeneity on exploratory tunnelling by the subterranean termite Coptotermes frenchi (Isoptera: Rhinotermitidae)

The exploration of sand-filled arenas by workers of an entire colony of the Australian, subterranean foraging, tree-nesting termite, Coptotermes frenchi Hill was investigated under laboratory conditions. The first experiment tested whether termite exploration of sand was influenced by the presence of gaps or objects in the sand. Gaps and objects were chosen to represent soil heterogeneity in the urban environment: gaps to represent tunnels dug by other animals, perspex strips to represent cables and pipes, and wood strips to represent roots. Termites always chose to explore gaps thoroughly before they began tunnelling in the sand. Significantly more and longer tunnels were excavated from the end of gaps at the far end of the arenas, and relatively little tunnelling occurred around and along objects. Termite density was significantly greater around and along wood compared with perspex blocks. The second experiment tested whether termite exploratory tunnelling was influenced by soil moisture. The termites tunnelled slowly in dry sand, but after discovering a patch of wet sand, increased tunnelling five-fold until it was completely explored, after which activity declined. Energy and water conservation may be behind these patterns of exploratory tunnelling as well as those seen in large field studies, but caution is urged when interpreting small scale laboratory experiments to explain large scale field data.     

Honeybee navigation: linear perception of short distances travelled

Recent evidence indicates that honeybees measure distance flown to a food source by integrating, over time, the apparent visual motion of the environment that they experience en route to the goal. Is the bee's perception of distance travelled a linear function of distance, or is it some other function? This question was investigated by training bees to fly into a tunnel and receive a food reward. The walls and floor of the tunnel were lined with a random texture, and the reward was placed at one of two fixed distances, “near” or “far”, from the tunnel entrance. The feeder containing the reward was placed in a box which could be accessed through one of two openings, one on the left side of the box, and the other on the right. When the box was at the “near” position, the reward could only be accessed through the left-hand opening; when the box was at the “far” position, the reward could only be accessed through the right-hand opening. When the trained bees were tested individually in an identical, fresh tunnel with the reward removed from the box, they showed a strong preference for the left-hand opening when tested at the “near” distance, and for the right-hand opening when tested at the “far” distance. At intermediate positions, the bees' preference for the two openings varies linearly with distance. These findings suggest that the honeybee's perception of distance travelled is linear, at least over the distances and range of image motions experienced in our experiments. The implications for navigation and for the encoding of distance information in the dance are discussed.     

Exploring biomolecular machines: energy landscape control of biological reactions

For almost 15 years, our Pathway model has been the most powerful model in terms of predicting the tunnelling mechanism for electron transfer (ET) in biological systems, particularly proteins. Going beyond the conventional Pathway models, we have generalized our method to understand how protein dynamics modulate not only the Franck-Condon factor, but also the tunnelling matrix element. We have demonstrated that when interference among pathways modulates the electron tunnelling interactions in proteins (particularly destructive interference), dynamical effects are of critical importance. Tunnelling can be controlled by protein conformations that lie far from equilibrium-those that minimize the effect of destructive interference during tunnelling, for example. In the opposite regime, electron tunnelling is mediated by one (or a few) constructively interfering pathway tubes and dynamical effects are modest. This new mechanism for dynamical modulation of the ET rate has been able to explain and/or predict several rates that were later confirmed by experiment. However, thermal fluctuations can also affect these molecular machines in many other ways. For example, we show how global transformations, which control protein functions such as allostery, may involve large-scale motion and possibly partial unfolding during the reaction event.     

Attributional life cycle assessment (ALCA) of polyitaconic acid production from northeast US softwood biomass

Purpose

Shifting the resource base for chemical and energy production from fossil feed stocks to renewable raw materials is seen by many as one of the key strategies towards sustainable development. The objective of this study is to assess the environmental burdens of producing polyitaconic acid (PIA), a water-soluble polymer derived from itaconic acid identified by the US Department of Energy as one of the top 12 value added chemicals from northeast (NE) US softwood biomass. Results are compared to corn-derived PIA and fossil-based poly acrylic acid (PAA) on the basis of 1 kg of polymer at the factory gate.

Methods

This study uses attributional life cycle assessment to quantify global warming potential (GWP), fossil energy demand (CED), acidification, eutrophication, water use, and land occupation of the polymer production routes. This includes feedstock growth and harvest, sugar extraction, fermentation, itaconic acid recovery, and subsequent polymerization. Foreground data for softwood-derived PIA comes from lab- and pilot plant runs undertaken by Itaconix LLC.

Results and discussion

Results indicate that the use of softwood-based PIA may be advantageous in terms of GWP, CED, and acidification when compared to both, the integrated corn biorefinery and fossil-based PAA production. When looking at impacts to eutrophication and water use, the use of softwood leads to lower potential impacts compared to its corn-based counterpart but to higher impacts when compared to fossil-based PAA. Land occupation, to a large extent, due to lower yields and longer growth cycles associated with softwood growth in the NE, is highest for softwood-derived PIA and lowest for fossil-based PAA. Environmental impacts are mainly the results of onsite electricity use, inputs of activated carbon and sodium hydroxide, as well as water use during sugar extraction and fermentation. Assumptions with regards to allocation, activated carbon inputs, and electricity mixes to processes of the foreground system are tested in a sensitivity analysis.

Conclusions

Wood-derived PIA production may be an interesting alternative to current fossil-based pathways and could contribute to a future biobased economy. However, currently, land occupation, water use, and eutrophication are high when compared to traditional PAA production. The use of short rotation crops or waste feedstocks and optimization with regards to water requirements and reuse should be investigated to further lower system-wide impacts.     

Cellulose nanofibrils prepared from softwood cellulose by TEMPO/NaClO/NaClO₂ systems in water at pH 4.8 or 6.8

Catalytic oxidation of softwood cellulose using NaClO and either 2,2,6,6-tetramethylpiperidine-1-oxyl (4-H-TEMPO) or 4-acetamido-TEMPO (4-AcNH-TEMPO) was applied with NaClO(2) used as a primary oxidant in an aqueous buffer at pH 4.8 or 6.8. When the 4-AcNH-TEMPO-mediated oxidation was applied to softwood cellulose in water at pH 4.8 and 40 °C, the carboxylate content rose to ～1.3 mmol/g after reaction for 48 h and the DP(v) value was more than 1100. This 4-AcNH-TEMPO-oxidized softwood cellulose was mostly converted to individual nanofibrils by mechanical disintegration in water, with uniform widths of 3-4 nm and lengths greater than 1 μm.