Creating a comprehensive training documentation program

The regulations mandate that individuals involved in research animal care and use receive adequate training, but they fail to address the documentation of the training. The authors provide guidelines for training documentation and, as an example, describe the program in place at the University of Pennsylvania.     

The basics of animal biosafety and biocontainment training

The threat of biocontamination in an animal facility is best subdued by training. 'Training' is an ambiguous designation that may not be adequately appreciated in all animal facilities. The authors set down concrete training topics and provide practical advice on incorporating the basic principles of facility biosafety training--as well as the precautions and procedures that employees must know in case of accident or emergency--into various training models. They also discuss the current biosafety publications and guidelines and their relationship to biosafety training.     

Training captive chimpanzees to cooperate for an anesthetic injection

Captive animals trained to cooperate with routine medical procedures, such as injections, may experience less aggression and anxiety than those forced to comply through the use of restraints. The authors used positive reinforcement training to teach captive chimpanzees to present a body part for anesthetic injection and determined the time investment necessary for initial training and duration of maintenance of the behavior after completion of the training.     

Support vector machines in HTS data mining: Type I MetAPs inhibition study

This article reports a successful application of support vector machines (SVMs) in mining high-throughput screening (HTS) data of a type I methionine aminopeptidases (MetAPs) inhibition study. A library with 43,736 small organic molecules was used in the study, and 1355 compounds in the library with 40% or higher inhibition activity were considered as active. The data set was randomly split into a training set and a test set (3:1 ratio). The authors were able to rank compounds in the test set using their decision values predicted by SVM models that were built on the training set. They defined a novel score PT50, the percentage of the test set needed to be screened to recover 50% of the actives, to measure the performance of the models. With carefully selected parameters, SVM models increased the hit rates significantly, and 50% of the active compounds could be recovered by screening just 7% of the test set. The authors found that the size of the training set played a significant role in the performance of the models. A training set with 10,000 member compounds is likely the minimum size required to build a model with reasonable predictive power.     

Virtual ligand screening against Escherichia coli dihydrofolate reductase: improving docking enrichment using physics-based methods

Motivated by their participation in the McMaster Data-Mining and Docking Competition, the authors developed 2 new computational technologies and applied them to docking against Escherichia coli dihydrofolate reductase: a receptor preparation procedure that incorporates rotamer optimization of side chains and a physics-based rescoring procedure for estimating relative binding affinities of the protein-ligand complexes. Both methods use the same energy function, consisting of the all-atom OPLS-AA force field and a generalized Born solvent model, which treats the protein receptor and small-molecule ligands in a consistent manner. Thus, the energy function is similar to that used in more sophisticated approaches, such as free-energy perturbation and the molecular mechanics Poisson-Boltzmann/surface area, but sampling during the rescoring procedure is limited to simple energy minimization of the ligand. The use of a highly efficient minimization algorithm permitted the authors to apply this rescoring procedure to hundreds of thousands of protein-ligand complexes during the competition, using a modest Linux cluster. To test these methods, they used the 12 competitive inhibitors identified in the training set, plus methotrexate, as positive controls in enrichment studies with both the training and test sets, each containing 50,000 compounds. The key conclusion is that combining the receptor preparation and rescoring methods makes it possible to identify most of the positive controls within the top few tenths of a percent of the rank-ordered training and test set libraries.     

脑电生物反馈系统的研制和脑电α成分反馈的研究

本文介绍了我们研制的微机化脑电反馈系统.并报告了我们所进行的正常人脑电α成分生物反馈训练实验,证明了脑电生物反馈提升α成分比例的可行性.本文还论讨了国际上现行关于脑电α成分生物反馈研究中存在的问题,提出了有效的解决方法.     

Observations on assistance dog training and use

Trained service dogs assist and also add pride, self-reliance, and personal satisfaction to an individual's daily life. However, well-bred, trained dogs are very expensive. To explore decreasing the cost of a service dog by increasing the number of dogs successfully completing training, the authors analyzed tasks that service dogs are expected to perform, measuring some of the inherent physical stresses the dogs encounter and considering training techniques to better prepare the dogs for more successful completion of tasks. Observing working dogs, the authors found that undue stress was placed on many of the dogs while performing tasks; that motivational gestures for performance were not fully extended; and that, many times, handlers did not instruct the dogs properly. The working dogs observed often were required to perform tasks that put them at risk of injury and performance failure. Important future considerations for training and handling working dogs will include proper training of handlers and a better understanding of the complexities of the instinctive and physical capabilities and limitation of dogs.     

What are the facts concerning the number of residency positions in Canada?

Some physicians think the current squeeze facing postgraduate medical education was caused by cuts in the number of residency positions. The authors consulted the Canadian Post-MD Education Registry database to determine the actual state of postgraduate training opportunities and to correct erroneous views that may be affecting the debate over training positions. The danger, they say, is that misinformation may lead to inappropriate strategies for dealing with current challenges.     

A program for simulated rodent surgical training

For the inexperienced individual, learning surgical techniques can be taxing. The authors developed a rodent surgery dry lab training program to assist educational and research institutions in providing low-stress training for basic surgical techniques using handmade, cost-effective simulation models. The program not only helps students develop essential skills in basic surgery, but also fulfills the mandate of the 3Rs by allowing students to repeatedly practice and refine their skills on models rather than live animals. This type of training is a valuable tool in bridging the gap between computer training and training with live animals.     

Residency training in plastic surgery: a survey of educational goals

With the advent of integrative plastic surgical training programs, requirements for earlier specialization decisions, and an increasing subspecialization within the practice of plastic surgery, the educational goals of residency training may have changed. The duration and extent of training required are also currently being questioned. This study was performed to better understand the necessary roles of plastic surgery residencies and to determine how these demands might optimally be met. Of 151 practicing plastic surgeons in the Ontario, Canada, region, 81 (53.6 percent) responded to a survey. General agreement was that 2 years was an optimal length of time for core surgical training, which should then be followed by at least 3 years of plastic surgical training. Opinions on the ideal length of time training in specific medical and surgical disciplines are discussed. Overall, respondents thought that two thirds of training should occur in tertiary care centers, with the remaining time spent at smaller community centers and private clinics. Nearly half of respondents thought that research training should be a mandatory part of the residency, although the amount of protected time for this activity varied substantially. Most thought that unrestricted elective time should also be available. Academic plastic surgeons rated the importance of research training (p < 0.01), critical appraisal skills (p < 0.05), and teaching skills (p < 0.05) as significantly more important than did their nonacademic colleagues. The authors present results from the Ontario region and a template for determining optimal characteristics for training programs. Further investigation may be of timely importance during a foreseeable future transition from traditional to integrative plastic surgery residency training.     

Learning to Control Actions: Transfer Effects following a Procedural Cognitive Control Computerized Training

Few studies have addressed action control training. In the current study, participants were trained over 19 days in an adaptive training task that demanded constant switching, maintenance and updating of novel action rules. Participants completed an executive functions battery before and after training that estimated processing speed, working memory updating, set-shifting, response inhibition and fluid intelligence. Participants in the training group showed greater improvement than a no-contact control group in processing speed, indicated by reduced reaction times in speeded classification tasks. No other systematic group differences were found across the different pre-post measurements. Ex-Gaussian fitting of the reaction-time distribution revealed that the reaction time reduction observed among trained participants was restricted to the right tail of the distribution, previously shown to be related to working memory. Furthermore, training effects were only found in classification tasks that required participants to maintain novel stimulus-response rules in mind, supporting the notion that the training improved working memory abilities. Training benefits were maintained in a 10-month follow-up, indicating relatively long-lasting effects. The authors conclude that training improved action-related working memory abilities.     

Training the trainee: the institution's responsibility to the often forgotten

Because some trainees are not university employees, regulatory agencies, oversight committees, and investigators may overlook those who work with animals when it comes to training related to animal care and use. The authors draw attention to a common problem facing universities and suggest ways to close the gap in training.     

Engaging the IACUC through comprehensive training

The IACUC is one of the most important committees at a research institution and plays a critical role in the success of an animal care and use program. It is the responsibility of the institution to provide IACUC members with adequate and appropriate training. The authors explore various IACUC training options.     

Response of the rat cardiovascular system to a moderate altitude in connection with endurance training

The authors investigated whether an altitude of 1,350 m would affect the rat cardiovascular system in the same way as genuine altitude hypoxia and the way it would take effect when combined with endurance training in the form of swimming It was found that 8 weeks spent at this altitude led to an increase in absolute and relative heart weight, to right ventricular hypertrophy, and to increased resistance of the myocardium to acute anoxia. Physical training at a moderate altitude resulted in an increase in the relative weight of the musculature of both the right and the left ventricle and of the septum. Unlike low altitude training, however, growth of the two compartments of the heart was proportional. The resistance of the myocardium of trained animals against anoxia was the same, irrespective of whether they trained at a low or a high altitude. The results show that even a moderate altitude is not a matter of indifference for the rat organism, but that it leads to characteristic manifestations of altitude hypoxia in the cardiovascular system.     

The effectiveness of biofeedback-assisted relaxation in modifying sickle cell crises

Eight outpatients with sickle cell disease received six EMG and six thermal half-hour biofeedback training sessions. Statistically significant changes in the desired directions were obtained for the following variables: (a) frontalis muscle tension, (b) digital temperature, (c) frequency of headache as a crisis symptom, (d) frequency of analgesic use, (e) perceived pain intensity, (f) frequency of self-treated crises, and (g) state anxiety. Nonsignificant changes in hospital chart data were found. A 6-month posttreatment follow-up questionnaire revealed the continued effectiveness of the training received regarding headaches and mild pains.Portions of this paper were presented at the meeting of the Eastern Psychological Association, April 1984 and March 1985. The authors wish to publically thank the Ladies Auxiliary of St. Luke's-Roosevelt Hospital Center for donating tape recorders, home training relaxation tapes, and velcro thermistors to all participants. The authors are deeply grateful to Doris L. Wethers, M. D., director of the Sickle Cell Clinic at St. Luke's-Roosevelt Hospital Center for her cooperation with this study. She was especially helpful in clarifying the clinical manifestations of sickle cell disease. She was also helpful in enrolling patients and in obtaining the above-mentioned funding.     

Instructed heart rate control in the presence and absence of a distracting task: The effects of biofeedback training

Twenty volunteers participated in a single-session experiment in which bidirectional heart rate (HR) control was assessed before and after brief unidirectional HR biofeedback. Subjects attempted to raise (INC) and lower (DEC) HR while performing mental arithmetic, as well as in no-task conditions. Biofeedback training was also carried out in the presence and absence of mental arithmetic. Subjects were divided into two groups on the basis of initial HR reactivity to mental arithmetic. Group U received feedback and instructions to raise HR during the training period, while group D attempted to lower HR. Significant differences in HR modifications during INC and DEC trials were observed prior to any biofeedback training in no-task conditions. Following training, however, ability to raise HR deteriorated in group D, while HR decelerations were impaired in group U. Unidirectional training in HR control thus handicapped subsequent attempts to modify HR in the reverse direction. The pattern of HR change was generally paralleled by respiration rate. Subjects were also able to influence the cardiac reactions to mental arithmetic even before the administration of biofeedback. The data nevertheless suggest that training affects the magnitude of HR reactions after the biofeedback is withdrawn. In the biofeedback phase itself, the HR increases and decreases produced by groups U and D, respectively, were diminished on simultaneous mental arithmetic performance.The authors are grateful to Drs. Beryl Starr and Alvin Ross for their advice at various stages of this project.     

Isolated vs. complex exercise in strengthening the rotator cuff muscle group

The purpose of this study was to compare 2 different training modes in improving shoulder cuff muscular performance. Thirty-nine participants were randomly assigned into 3 groups: the isolated group exercised using 2-kg dumbbells; the complex group used a protocol with complex exercises; and the control group had no training. All participants trained for 6 weeks (3 times per week) and were evaluated isokinetically before (pretest) and after the training period (posttest). Results showed that the complex group significantly improved their muscular performance, but the isolated group did not, indicating that isolated exercises are only effective when the training goal is to strengthen the weaker muscle group, but they must be replaced by more complex and closed-kinetic exercises in order to obtain considerable improvement of the rotator cuff strength. The authors propose that a strengthening program should start with isolated movements for better stimulation of the weaker muscles and continue with complex exercise for more impressive strengthening.     

Experience with the methodological guidance of the on-the-job training of epidemiology graduates

Seven-year experience in the methodological guidance of the post-graduate specialization of medical graduates specializing in epidemiology has made it possible for the authors to come to the conclusion on the positive role of the on-the-job training of young specialists for a year after graduation, which is manifested by a shorter time necessary for their professional formation, the development of their capacity for making scientifically grounded, active solutions of practical problems. At the same time some defects, difficulties, and unsolved problems of on-the-job training have been revealed. The authors propose to organize internship also for this category of medical specialists and to carry out the specialization of all sanitary inspectors on the basis of "clinical" sanitary and epidemiological stations.     

Adaptation to Teaching Loads in New Educational Institutions

The authors analyzed physical development and training, nonspecific immunity, free-radical oxidation, hemodynamic indices, and autonomic regulation in pupils from the first to ninth grade levels of a new educational institution (gymnasium). All of these indices were influenced by the motor activity level. The children with hypokinesia had disadaptive changes in hemodynamics, weakened immunity, and lower antioxidant protection. The authors suggest principles for the pathogenetic correction of these disorders.     

Prediction-based fingerprints of protein-protein interactions

The recognition of protein interaction sites is an important intermediate step toward identification of functionally relevant residues and understanding protein function, facilitating experimental efforts in that regard. Toward that goal, the authors propose a novel representation for the recognition of protein-protein interaction sites that integrates enhanced relative solvent accessibility (RSA) predictions with high resolution structural data. An observation that RSA predictions are biased toward the level of surface exposure consistent with protein complexes led the authors to investigate the difference between the predicted and actual (i.e., observed in an unbound structure) RSA of an amino acid residue as a fingerprint of interaction sites. The authors demonstrate that RSA prediction-based fingerprints of protein interactions significantly improve the discrimination between interacting and noninteracting sites, compared with evolutionary conservation, physicochemical characteristics, structure-derived and other features considered before. On the basis of these observations, the authors developed a new method for the prediction of protein-protein interaction sites, using machine learning approaches to combine the most informative features into the final predictor. For training and validation, the authors used several large sets of protein complexes and derived from them nonredundant representative chains, with interaction sites mapped from multiple complexes. Alternative machine learning techniques are used, including Support Vector Machines and Neural Networks, so as to evaluate the relative effects of the choice of a representation and a specific learning algorithm. The effects of induced fit and uncertainty of the negative (noninteracting) class assignment are also evaluated. Several representative methods from the literature are reimplemented to enable direct comparison of the results. Using rigorous validation protocols, the authors estimated that the new method yields the overall classification accuracy of about 74% and Matthews correlation coefficients of 0.42, as opposed to up to 70% classification accuracy and up to 0.3 Matthews correlation coefficient for methods that do not utilize RSA prediction-based fingerprints. The new method is available at http://sppider.cchmc.org.