Background context and decision making in hoarding gray jays

If decision makers assign stable fitness-related values to options, preference for the most valuable of simultaneously encounteredoptions should be independent of background context (i.e.,prior options). The tendency to choose optionx versus y shouldbe unaffected by whether the decision maker has already beengiven a choice betweenx' and y' or between x' and y'. Here, food-hoarding gray jays (Perisoreus canadensis) were given aninitial choice between x' (one raisin, 0.5 m into a tube) and y' (three raisins, 0.5 m) or between x' and y' (both identicalto x'). All subjects were then given a choice between x' (oneraisin, 0.3 m) and y' (three raisins, 0.7 m). In violationof the principle of irrelevant alternatives, the "market share"ofx depended on prior options. Subjects initially exposed tocontext {x', y'} showed a stronger preference for x than did subjects initially exposed to {x', y'}, which implies thatthe jays did not assign a fixed value to each option. Subjectsthat initially could obtain a large reward (y') for about thesame "price" (perceived danger) as a small reward (x') apparentlydevalued the large reward (y) in the subsequent choice. Thiseffect may be the joint byproduct of cognitive constraints andan adaptive tendency to use information provided by the context.     

The green-veined white (Pieris napi L.), its Pierine relatives, and the systematics dilemmas of divergent character sets (Lepidoptera, Pieridae)

The butterfly Pieris napi (L.) and relatives exemplify recently evolving taxa, exhibiting variation that makes their evolutionary dynamics interesting, but their systematics difficult. Wing-pattern characters commonly used to distinguish these Holarctic insects display both genetic polymorphism and environmentally-cued polyphenism. Often, these causes of variation are confounded, impairing the characters' phylogenetic usefulness. DNA sequences of four mitochondrial genes offer an independent view of pierine phylogeny. Sampling diverse relatives within family Pieridae assists resolution of the P. napi complex, suggests previous underestimation of clade diversity in subfamily Pierinae, and shows that other genera near Pieris also display confusions of wing-pattern-based phylogenetic inference. The European P. napi is sister to all North American taxa, and is well diverged from them all in sequences. The North American taxa comprise a northern subclade including Pieris oleracea , and questionably distinct Pieris ' angelika ', and a southern subclade including distinct Pieris virginiensis , Pieris marginalis , and Pieris macdunnoughii , and other regional entities yet to be clarified. Weak bootstrap support for some nodes in this group arises from a closeness of sequence identity rather than character conflict; more sequence data and denser geographical sampling may resolve these nodes more clearly. Evidence of reproductive isolation, from other experimental hybridization studies, agrees with the DNA results where these conflict with other divergent character sets. The system offers much promise for a deeper understanding of character evolution in relation to phyletic differentiation.  © 2006 The Linnean Society of London, Biological Journal of the Linnean Society , 2006, 88 , 413–435.     

Post-GWAS: where next? More samples,more SNPs or more biology?

The power of genome-wide association studies (GWAS) rests on several foundations: (i) there is a significant amount of additive genetic variation, (ii) individual causal polymorphisms often have sizable effects and (iii) they segregate at moderate-to-intermediate frequencies, or will be effectively ‘tagged'' by polymorphisms that do. Each of these assumptions has recently been questioned. (i) Why should genetic variation appear additive given that the underlying molecular networks are highly nonlinear? (ii) A new generation of relatedness-based analyses directs us back to the nearly infinitesimal model for effect sizes that quantitative genetics was long based upon. (iii) Larger effect causal polymorphisms are often low frequency, as selection might lead us to expect. Here, we review these issues and other findings that appear to question many of the foundations of the optimism GWAS prompted. We then present a roadmap emerging as one possible future for quantitative genetics. We argue that in future GWAS should move beyond purely statistical grounds. One promising approach is to build upon the combination of population genetic models and molecular biological knowledge. This combined treatment, however, requires fitting experimental data to models that are very complex, as well as accurate capturing of the uncertainty of resulting inference. This problem can be resolved through Bayesian analysis and tools such as approximate Bayesian computation—a method growing in popularity in population genetic analysis. We show a case example of anterior–posterior segmentation in Drosophila, and argue that similar approaches will be helpful as a GWAS augmentation, in human and agricultural research.     

Genes Encoding the Group I Intron-containing tRNALeu and Subunit L of NADH Dehydrogenase from the Cyanobacterium Synechococcus PCC 6301

A part of the tRNA^Leu (UAA) gene containing a 240-nucleotidegroup I intron was amplified by PCR from cyanobacterium SynechococcusPCC 6301 genomic DNA. The pre-tRNA synthesized from the clonedPCR product was efficiently self-spliced in vitro under physiologicalconditions. The gene encoding the tRNA^Leu (UAA), trnL-UAA, wasisolated from a Synechococcus PCC 6301 genomic library and thenucleotide sequence of a 2,167-bp portion was determined. ThetrnL-UAA consists of a 34-bp 5' exon, a 240-bp group I intronand a 50-bp 3' exon. In addition, three open reading frames(ORF1, ORF2 and ORF3) were found in the 5' and 3' flanking regionsof trnL-UAA. The predicted protein sequence of ORF3, which islocated 74-bp upstream from trnL-UAA on the opposite strand,shows 66.2% amino acid identity to that of the SynechocystisPCC 6803 gene encoding subunit L of NADH dehydrogenase (ndhL).     

Brood size, sibling competition, and the cost of begging in great tits (Parus major)

Evolutionary theory of parent-offspring conflict explains beggingdisplays of nestling birds as selfish attempts to influenceparental food allocation. Models predict that this conflictmay be resolved by honest signaling of offspring need to parents,or by competition among nestmates, leading to escalated beggingscrambles. Although the former type of models has been qualitativelysupported by experimental studies, the potential for a beggingcomponent driven by scramble competition cannot be excludedby the evidence. In a brood-size manipulation experiment withgreat tits, Parus major, we explored the scramble componentin the begging activity of great tit nestlings by investigatingthe mechanisms of sibling competition in relation to brood size.While under full parental compensation, the feeding rate pernestling will remain constant over all brood sizes for bothtypes of models; the scramble begging models alone predict anincrease in begging intensity with brood size, if begging costsdo not arise exclusively through predation. Great tit parentsadjusted feeding rates to brood size and fed nestlings at similarrates and with similar prey sizes in all three brood-size categories.Despite full parental compensation, the begging and food solicitationactivities increased with experimental brood size, whereas nestlingbody condition deteriorated. These findings support a scramblecomponent in begging and suggest that the competition-inducedcosts of food solicitation behavior play an important role inthe evolution of parent-offspring communication.     

Effects of the new plant growth retardants of quaternary ammonium iodides on gibberellin biosynthesis in Gibberella fujikuroi

The effects of twelve quaternary ammonium iodides, synthesizedas plant growth relardants, on the biosynthesis of gibberellinsin the culture of Gibberella fujikuroi were investigated. Ofthe two compounds with the strongest growth-retarding activity,N,N,N-trimethyl-1-methyl-(3',3',5'-trimethylcydohexyl)-2-propenylammonium iodide (1) was found to inhibit the biosynthesis, whileN,N,N-trimethyl-l-methyl-(3',3',5'5'- tetramethylcyclohexyl)-2-propenylammonium iodide (2) was not. The results on examination of thetwelve analogues indicate that their plant growth-retardingactivity is not related to the inhibition of gibberellin biosynthesis. (Received July 18, 1978; )     

Edmund Beecher Wilson, Class of '81

Edmund Beecher Wilson was born in Geneva, Illinois in 1856.He attended Antioch College, the University of Chicago, Yale,and Johns Hopkins (Ph.D. 1881). Most of his professional lifewas spent in the Zoology Department of Columbia University togetherwith his close friend, Thomas Hunt Morgan. They were dominantfigures in developing the Chromosome Theory of Heredity. Wilsonbegan his professional life as a conventional 19th century biologiststudying problems of systematics, morphology, and phylogeny.Soon he became a key figure in the newer experimental disciplinesof embryology, cytology, and heredity. He is remembered todaylargely for his superb synthesis of these three fields in TheCell in Development and Heredity. He died in 1939.     

Degradation of Chitotetraose to Chitobiose in the Axenic Rape Rhizosphere

In the presence of intact roots of 2-week-old axenic rape seedlings,added N, N', N', N'-tetraacetylchitotetraose was degradedto N, N'-diacetylchitobiose during 48 h of incubation. Onlyminute amounts of monomer (N-acetyglucosamine) were formed fromadded chitotetraose or chitobiose. The addition of a purifiedchitin suspension caused no measurable formation of degradationproducts. The formation of chitobiose from added chitotetraose was linear,suggesting the action of a constitutive enzyme during the incubationperiod. Key words: Brassica napus (L.) cv. Brink, rhizosphere, N, N'-diacetylchitobiose, N,N',N',N', tetraacetylchitotetraose     

Electrotonic Transmission of an Action Potential between Two Separated Internodal Cells of Chara through a Bridge

Two separated internodal cells of Chara braunii were broughtinto contact with each other longitudinally at their ends andconnected by another pathway composed of a metal bridge beyondthe region of intercellular contact. A conducted action potentialthat arrived at one foot of the bridge electrotonically depolarizedthe other foot of the bridge in the connected cell. The electriccoupling ratio (0.07?0.03), the ratio of the change in the membranepotential of one cell to that of the other cell, was too smallto allow transmission of an action potential. Two cells wereplaced in parallel and connected with two liquid bridges orpools, a' and b'. When the action potential of one cell wasconducted through one connecting pool (pool a)', the other cellwas depolarized electrotonically by the action current via theother connecting pool (pool b'). The coupling ratio was increasedto 0.26?0.07 by the solution bridge, but transmission of theaction potential was rarely observed. Application of 1 mM KC1to pools a' and/or b' slightly improved the frequency of transmissionof the action potential. When pool b' contained 5% urethane,the coupling ratio increased to 0.31?0.08 and transmission ofthe action potential was frequent. (Received August 24, 1989; Accepted March 14, 1990)     

Isolation and some properties of an aryl acylamidase from red rice, Oryza sativa L., that metabolizes 3',4'-dichloropropionanilide

An aryl acylamidase (aryl-acylamine amidohydrolase, E. C. 3.5.1.a)was isolated from red rice (Oryza sativa L.) seedlings and purifiedapproximately 5-fold with ammonium sulfate precipitation andgel filtration. The enzyme hydrolyzed 3',4'-dichloro- propionanilide(propanil) and several other mono- and dichloro-substitutedpropionanilides and 3',4'-dichloroanilide alkyl analogs. Substratespecificity tests on these analogs indicated the following substratepreference: propanil > 3'-chloropropionanilide > propionanilide> 4'-chloropropionanilide 3',5'-dichloropropionanilide 2'- chioropropionanilide. Tests on a series of 3',4'-dichloroanilidealkyl analogs of propanil revealed: propanil > 3,4-dichloroacetanilide> 3',4'-dichlorovaleranilide. The apparent Km for 3',4'-dichloropropionanilide was determinedfrom a double reciprocal plot of initial velocities at severalsubstrate concentrations. A value of Km=2.5 ? 10^–5 M wasobtained. The temperature optimum, when assayed with propanilas substrate, was 50?C. Although the pH optimum was 8.2, therewas relatively high enzyme activity over a wide range of pHvalues between 7.4–8.7. Several compounds, e.g. p-benzoquinone,pyrocatechol and CuSO₄, were found to effectively inhibit theenzyme activity on propanil. These results indicated that theproperties of this aryl acylamidase from red rice are very similarto those of enzymes from a commercial rice variety and fromother plant species. ¹ Mississippi Agricultural and Forestry Experiment Station cooperating. (Received January 6, 1978; )     

Physiological epistasis, ontogenetic conflict and natural selection on physiology and life history

Ontogenetic conflict arises when optima for alleles governingfitness variation differ between juveniles and adults or betweenadult sexes. Loci that govern development of alternative phenotypesin the sexes, hereafter termed morph-determining loci, mediatedevelopment through the endocrine system. Morphotypic selectionis defined to be multivariate selection favoring discrete alternativemorphotypes (e.g., optima). When the optimal combinations ofalleles for alternative morphs differ between the sexes, itgenerates conflicting selection pressure and thus ontogeneticconflict. Selection on morph alleles promotes ontogenetic conflictbecause it perturbs physiological epistasis that governs theexpression of male versus female traits. Expression of physiologicaltraits arises from homeostasis that maintains trait expressionwithin a normal range. The genetic basis of homeostasis is likelyto arise from interactions among several genes (e.g., geneticepistasis) or protein products (e.g., physiological epistasis).For example, endocrine regulation arises from interactions betweengondatropins, which are protein hormones produced by the hypothalamic-pituitaryglands, and steroid hormones, which are produced by the gonads(e.g., HPG axis). The side-blotched lizard system is discussedwith respect to physiological bases of ontogenetic conflict.We also describe a novel molecular marker strategy for uncoveringgenome-wide physiological epistasis in nature. Finally, ontogeneticconflict exerts selection on females to evolve mate selectionor cryptic choice that is reflected in different sires beingchosen for son versus daughter production. We describe how side-blotchedlizard females ameliorate ontogenetic conflict by cryptic choiceof male genotypes to produce sons versus daughters.     

Pigment Composition of Chlorophyll-Protein Complexes Isolated from the Green Alga Bryopsis maxima

SDS-solubilized thylakoid membranes of Bryopsis maxima showeda similar pattern to those of higher plants in SDS-poIyacrylamidegel electrophoresis. Absorption spectra and pigment compositionof both CP1 and CPa bands were similar to those of higher plantsand other algae. Five bands containing chlorophyll (Chl) b weredivided into three categories; a group of major light-harvestingChl a/b-protein complexes (LHCP 1, LHCP 2 and LHCP 3), a minorLHCP (LHCP 3') and a photosystem I complex (CP1a). LHCP 1, thehigh molecular form, showed the lowest Chl a/b ratio among theLHCPs, and contained only xanthophylls as carotenoids. LHCP2, LHCP 3 and LHCP 3' bands contained xanthophylls and carotene.Carotenoid composition of LHCP 3' was different from that ofthe major LHCPs. CP1a band contained a considerable amount ofsiphonaxanthin and siphonein. (Received May 24, 1985; Accepted December 13, 1985)     

一种新的家蚕体形突变体——短体蚕（Sq）的遗传分析与基因定位

作为重要经济昆虫和鳞翅目昆虫模式的家蚕Bombyx mori,其突变体是生理学、遗传学、功能基因组学等研究的宝贵资源。作者在家蚕资源保存和遗传分析中发现一种新的体形突变体——短体蚕（Squab,Sq）,其特征是：杂合体（Sq /+）成活,蚕体长只有正常型的约4/5,腹中部略肥大,胸部稍狭小;纯合体（Sq / Sq）胚胎期致死。遗传分析结果表明该突变为显性遗传。通过与各染色体标记基因进行连锁分析,发现突变基因Sq在家蚕第14染色体上;通过与同一染色体上的标记基因青熟油蚕基因（oa）、不洁蚕基因（Di）进行三点测验,将Sq定位在家蚕连锁图谱第14连锁群的34.6 cM位点,表示为Sq（14-34.6）。本研究结果为深入研究和利用该突变体奠定了重要基础。     

Effect of cyclic 3',5'-adenosine monophosphate on the sporulation of Saccharomyces cerevisiae

Cyclic 3',5'-adenosine monophosphate and sodium dibutyryl cyclic3',5'-adenosine monophosphate had no effect on sporulation ofSaccharomyces cerevisiae, when added to a sporulation mediumnot enriched with glucose. They did, however, reverse the repressionof sporulation by glucose, when added to the sporulation mediumtogether with glucose. 5'-AMP, 5'-ADP and 5'-ATP did not reversethe repression of sporulation by glucose. (Received February 24, 1972; )     

Spore Germination Patterns in the Ferns, Cyathea and Dicksonia

Cell division patterns during germination of spores of Cyatheaaustralis, C. cooperi and Dicksonia antarctica were examinedby light microscopy of sectioned materials and by the scanningelectron microscope. In C. australis and C. cooperi the rhizoidwas traced to a small cell formed by an asymmetric divisionof the spore by a wall parallel to its equatorial plane. Incontrast, the rhizoid was formed by a division of the sporeparallel to its polar axis in D. antarctica. In spores of bothgenera, a second division wall oriented in a plane perpendicularto the first gave rise to the protonemal cell. Certain aspectsof germination described here in spores of Cyathea and Dicksoniaare in conflict with the published accounts of spore germinationin these genera. Cyathea, Dicksonia, spore germination, cell division pattern     

Greetings from the new Editor-in-Chief

I am very pleased to take over the position of Editor-in-Chiefof Plant and Cell Physiology, the most prestigious and trulyinternational journal focusing on physiology, biotechnology,biophysics, chemistry, genetics, molecular biology, gene engineeringand cell biology of plants and microorganisms. I will startby saying that I will do my best to improve the quality of     

Analysis of the Promoter of the Auxin-Inducible Gene, parC, of Tobacco

The auxin-responsive region (AuxRR) in the promoter of the parCgene was analyzed in transgenic tobacco plants in which the5' flanking region of the parC promoter was placed upstreamof the gene for rß-glucuronidase (GUS). The AuxRRwas located between nucleotides (nt) –226 and –54.Detailed dissection of this segment revealed that the presenceof the non-contiguous sequences from nt –226 to –151and from nt –84 to –54 was required for the expressionof the auxin responsiveness of the parC promoter. The sequencefrom nt –226 to –151 was found to contain a sequencewhich resembles the as-1 element in the 35S promoter of cauliflowermosaic virus (CaMV). Although it has been reported that theas-1 element is involved in auxin responsiveness [Liu and Lam(1994) J. Biol. Chem. 269: 668], we showed that introductionof a point mutation into the as-1-like sequence completely eliminatedauxin responsiveness, a result that suggests that the sequenceis indispensable for auxin responsiveness. However, the presenceof the as-1-like sequence alone was not sufficient for auxinresponsiveness, since the segment (nt –226 to –84)that included the as-1-like sequence failed to confer auxinresponsiveness on the core promoter. It is possible that thetwo separately located sequences play specific roles in interactionswith trans-factors that are required for the expression of theauxin responsiveness of the parC promoter. (Received March 11, 1996; Accepted July 9, 1996)