H2O2 and (.)NO scavenging by Mycobacterium leprae truncated hemoglobin O

Kinetics of ferric Mycobacterium leprae truncated hemoglobin O (trHbOFe(III)) oxidation by H₂O₂ and of trHbOFe(IV)O reduction by NO and NO₂⁻ are reported. The value of the second-order rate constant for H₂O₂-mediated oxidation of trHbOFe(III) is 2.4 × 10³ M⁻¹ s⁻¹. The value of the second-order rate constant for NO-mediated reduction of trHbOFe(IV)O is 7.8 × 10⁶ M⁻¹ s⁻¹. The value of the first-order rate constant for trHbOFe(III)ONO decay to the resting form trHbOFe(III) is 2.1 × 10¹ s⁻¹. The value of the second-order rate constant for NO₂⁻-mediated reduction of trHbOFe(IV)O is 3.1 × 10³ M⁻¹ s⁻¹. As a whole, trHbOFe(IV)O, generated upon reaction with H₂O₂, catalyzes NO reduction to NO₂⁻. In turn, NO and NO₂⁻ act as antioxidants of trHbOFe(IV)O, which could be responsible for the oxidative damage of the mycobacterium. Therefore, Mycobacterium leprae trHbO could be involved in both H₂O₂ and NO scavenging, protecting from nitrosative and oxidative stress, and sustaining mycobacterial respiration.     

Alkoxy-substituted group 6 allenylidene complexes - Synthesis and properties

Bis(alkoxy)allenylidene complexes, [(CO)₅MCCC(OR′)OR], as well as mono(alkoxy)allenylidene complexes, [(CO)₅MCCC(OR′)Ph], of chromium and tungsten are accessible from propynones [HCCC(O)Ph] or propynoic acid esters [HCCC(O)OR; R = Et, (−)-menthyl, endo-bornyl] by the following reaction sequence: (a) deprotonation of the alkynes, (b) reaction with [(CO)₅M-THF] (M = Cr, W), and (c) alkylation of the resulting alkynyl metallate, [(CO)₅MCCC(O)R], with Meerwein salts. Vinylidene complexes, [(CO)₅MCC(R′)C(O)OR], are formed as a by-product by C_β-alkylation of the alkynyl metallate. Dimethylamine displaces one alkoxy substituent of the bis(alkoxy)allenylidene complexes to give dimethylamino(alkoxy)allenylidene complexes, [(CO)₅MCCC(OR)NMe₂]. The analogous reaction of dimethylamine with a mono(alkoxy)-substituted allenylidene complex affords the aminoallenylidene complex [(CO)₅CrCCC(NMe₂)Ph]. When the amine is used in large excess, the α,β-unsaturated aminocarbene complex [(CO)₅CrC(NMe₂)C(H)C(NMe₂)Ph] is additionally formed by addition of the amine across the C_αC_β-bond of the allenylidene ligand. The reaction of [(CO)₅MCCC(OEt)₂] with dimethyl ethylenediamine offers access to bis(amino)allenylidene complexes, in which C_γ is part of a five-membered heterocycle. Photolysis of bis(alkoxy)allenylidene complexes in the presence of triphenylphosphine yields tetracarbonyl- and tricarbonyl{bis(phosphine)}allenylidene complexes. Diethylaminopropyne inserts into the C_βC_γ bond of [(CO)₅MCCC(OEt)OMethyl] to give alkenylallenylidene complexes. Subsequent acid-catalyzed intramolecular cyclization affords a pyranylidene complex.     

Evidence for a pathway that facilitates nitric oxide diffusion in the brain

Nitric oxide (NO) is a diffusible messenger that conveys information based on its concentration dynamics, which is dictated by the interplay between its synthesis, inactivation and diffusion. Here, we characterized NO diffusion in the rat brain in vivo. By direct sub-second measurement of NO, we determined the diffusion coefficient of NO in the rat brain cortex. The value of 2.2 × 10⁻⁵ cm²/s obtained in vivo was only 14% lower than that obtained in agarose gel (used to evaluate NO free diffusion). These results reinforce the view of NO as a fast diffusing messenger but, noticeably, the data indicates that neither NO diffusion through the brain extracellular space nor homogeneous diffusion in the tissue through brain cells can account for the similarity between NO free diffusion coefficient and that obtained in the brain. Overall, the results support that NO diffusion in brain tissue is heterogeneous, pointing to the existence of a pathway that facilitates NO diffusion, such as cell membranes and other hydrophobic structures.     

The course of oxidative addition reactions of haloalkynes and haloalkenes to dimethyl- and dialkynylaurate(I) anions [RAuR]

The reactions of halo-alkynes Cl-CCH, C-lCC-Cl or PhCC-I with solutions of Li⁺[MeAuMe]⁻ in diethylether containing Ph₃P do not give the expected oxidative addition products Me₂(RCC)Au(PPh₃) with R = H, Cl, Ph. A mixture of other complexes is obtained instead which are generated in secondary reactions involving reductive elimination of ethane and/or dialkyne. However, addition of the halo-alkene H(Cl)CCCl₂ to the same substrate solution affords trans-Me₂[trans-H(Cl)CC(Cl)]Au(PPh₃) in good yield. Its molecular structure with pseudo-C_s symmetry has been determined by the solution NMR spectra and a single-crystal X-ray diffraction study. The reaction of methyl iodide with solutions of Li⁺[RCCAuCCR]⁻ in diethylether containing PPh₃ give the quaternary salts Ph₃PMe⁺ [RCCAuCCR]⁻ as the main products and only small amounts of cis-Me₂(RCC)Au(PPh₃) complexes probably formed in a series of oxidative addition, reductive elimination, and substitution reactions. The structure of Ph₃PMe⁺ [PhCCAuCCPh]⁻ has been determined.     

Organometallic π-tweezers incorporating pyrazine- and pyridine-based bridging units

Pyrazine- and pyridine-based π-conjugated σ-donor molecules, such as 4,4′-bipyridine, 1,2-di(4-pyridyl)ethylene, 3,5-dipyridyl-1,2,4-triazole, N,N′-bis(4-pyridylmethylidene)benzene-1,4-diamine, 2,5-di(pyridylmethylidene)cyclopentanone, 2,6-di(4-pyridylmethylidene)cyclohexanone (LL, 2a-2g) can successfully be used to span heterobimetallic π-tweezer units of the type [{[Ti](μ-σ,π-CCSiMe₃)₂}M]⁺ ([Ti] = (η⁵-C₅H₄SiMe₃)₂Ti; M = Cu, Ag). The thus accessible di-cationic species [{[Ti](μ-σ,π-CCSiMe₃)₂}MLLM{(Me₃SiCC-μ-σ,π)₂[Ti]}]²⁺ (4), which are formed via the formation of [{[Ti](μ-σ,π-CCSiMe₃)₂}MLL]⁺ (3) complexes, can be isolated in yields between 66% and 99%.However, when C₅H₄NCHCHC₆H₄CHCHNC₅H₄ (5a) and C₅H₄NCHNC₆H₄CHCHNC₅H₄ (5b), respectively, are reacted with {[Ti](μ-σ,π-CCSiMe₃)₂}AgBF₄(1c) in a 1:1 molar ratio, then the silver(I) ion is released from the organometallic π-tweezer 1c and coordination polymers [AgBF₄ · 5a]_n (6a) and [AgBF₄ · 5b]_n (6b) along with [Ti](CCSiMe₃)₂ (7) are formed in quantitative yield.     

Ferrocenyl-substituted allenylidene complexes of chromium, molybdenum and tungsten: Synthesis, structure and reactivity

Bis(ferrocenyl)-substituted allenylidene complexes, [(CO)₅MCCCFc₂] (1a-c, Fc = (C₅H₄)Fe(C₅H₅), M = Cr (a), Mo (b), W (c)) were obtained by sequential reaction of Fc₂CO with Me₃Si-CCH, KF/MeOH, n-BuLi, and [(CO)₅M(THF)]. For the synthesis of related mono(ferrocenyl)allenylidene chromium complexes, [(CO)₅CrCCC(Fc)R] (R = Ph, NMe₂), three different routes were developed: (a) reaction of the deprotonated propargylic alcohol HCCC(Fc)(Ph)OH with [(CO)₅Cr(THF)] followed by desoxygenation with Cl₂CO, (b) Lewis acid induced alcohol elimination from alkenyl(alkoxy)carbene complexes, [(CO)₅CrC(OR)CHC(NMe₂)Fc], and (c) replacement of OMe in [(CO)₅CrCCC(OMe)NMe₂] by Fc. Complex 1a was also formed when the mono(ferrocenyl)allenylidene complex [(CO)₅CrCCC(Fc)NMe₂] was treated first with Li[Fc] and the resulting adduct then with SiO₂. The replacement route (c) was also applied to the synthesis of an allenylidene complex (7a) with a CC spacer in between the ferrocenyl unit and C_γ of the allenylidene ligand, [(CO)₅CrCCC(NMe₂)-CCFc]. The related complex containing a CHCH spacer (9a) was prepared by condensation of [(CO)₅CrCCC(Me)NMe₂] with formylferrocene in the presence of NEt₃. The bis(ferrocenyl)-substituted allenylidene complexes 1a-c added HNMe₂ across the C_α-C_β bond to give alkenyl(dimethylamino)carbene complexes and reacted with diethylaminopropyne by regioselective insertion of the CC bond into the C_β-C_γ bond to afford alkenyl(diethylamino)allenylidene complexes, [(CO)₅MCCC(NEt₂)CMeCFc₂]. The structures of 5a, 7a, and 9a were established by X-ray diffraction studies.     

Iridium(III)-vinylidene chemistry: Conversion of an iridacyclopentadiene-chlorido complex and terminal alkynes to iridacyclopentadiene-vinyl complexes

The reactions of [κ²(C¹,C⁴)-CRCRCRCR](PPh₃)₂Ir(Cl) (9, R = CO₂Me) with propargyl alcohol derivatives (2-propyn-1-ol, 2-methyl-3-butyn-2-ol, 1-ethynylcyclopentanol, and 1-ethynylcyclooctanol), in the presence of water leads to the formation of iridium(III)-vinyl complexes bearing the general structure [κ²(C¹,C⁴)-CRCRCRCR](PPh₃)₂Ir(CO)(κ¹-vinyl) where vinyl = -CHCH₂, -(E)-CHCHMe, -CHC(CH₂)₄, or -CHC(CH₂)₇. In these, the CO ligand was derived from the terminal carbon of the starting alkyne and the oxygen atom from water. Under anhydrous conditions, 9 undergoes reaction with 2-propyn-1-ol to give trimethyl 1,3-dihydro-3-oxo-4,5,6-isobenzofurantricarboxylate, the result of a cycloaromatization/transesterification involving the buta-1,3-dien-1,4-diyl ligand in 9 and 2-propyn-1-ol.     

Synthesis and reactivity of iron carbonyl clusters containing alkynethiolate ligands

The new cluster Li[Fe₃(μ₃,η¹-SCCFc)(CO)₉] reacts with ClAuPPh₃ to afford compound [Fe₃Au(μ₄,η²-CCFc)(CO)₉(PPh₃)], which exhibits an isomeric equilibrium in solution with the cluster [Fe₃Au(μ₃,η²-CCFc)(CO)₉(PPh₃)].The rupture of C-S bonds in the thioethers Me₃SiCCSCCR (R = Fc, SiⁱPr₃) in the presence of Fe₃(CO)₁₂, yields to the clusters [Fe₃(μ-SCCSiⁱPr₃)(μ-CCSiMe₃)(CO)₉] and [Fe₃(μ,η²-(SiⁱPr₃)CCCCSiMe₃)(μ₃-S)(CO)₉] together with the unexpected compounds [Fe₂(μ-SCC(H)R)(CO)₆] (R = SiMe₃, SiⁱPr₃).Additionally, the dinuclear derivatives [Fe₂(μ-SCCR)(μ-CCR′)(CO)₆] (R = Fc, R′ = SiMe₃; R = SiMe₃, R′ = Fc; R = SiMe₃; R′ = SiⁱPr₃) have also been obtained. These compounds have been spectroscopically characterized and the crystal structure of some of them has been solved.     

Time-resolved FTIR difference spectroscopy in combination with specific isotope labeling for the study of A1, the secondary electron acceptor in photosystem 1

A phylloquinone molecule (2-methyl, 3-phytyl, 1, 4-naphthoquinone) occupies the A₁ binding site in photosystem 1 particles from Synechocystis sp. 6803. In menB mutant photosystem 1 particles from the same species, plastoquinone-9 occupies the A₁ binding site. By incubation of menB mutant photosystem 1 particles in the presence of phylloquinone, it was shown in another study that phylloquinone will displace plastoquinone-9 in the A₁ binding site. We describe the reconstitution of unlabeled (¹⁶O) and ¹⁸O-labeled phylloquinone back into the A₁ binding site in menB photosystem 1 particles. We then produce time-resolved Fourier transform infrared (FTIR) difference spectra for these menB photosystem 1 particles that contain unlabeled and ¹⁸O-labeled phylloquinone. By specifically labeling only the phylloquinone oxygen atoms we are able to identify bands in FTIR difference spectra that are due to the carbonyl (CO) modes of neutral and reduced phylloquinone. A positive band at 1494 cm⁻¹ in the FTIR difference spectrum is found to downshift 14 cm⁻¹ and decreases in intensity on ¹⁸O labeling. Vibrational mode frequency calculations predict that an antisymmetric vibration of both CO groups of the phylloquinone anion should display exactly this behavior. In addition, phylloquinone that has asymmetrically hydrogen bonded carbonyl groups is also predicted to display this behavior. The positive band at 1494 cm⁻¹ in the FTIR difference spectrum is therefore due to the antisymmetric vibration of both CO groups of one electron reduced phylloquinone. Part of a negative band at 1654 cm⁻¹ in the FTIR difference spectrum downshifts 28 cm⁻¹ on ¹⁸O labeling. Again, vibrational mode frequency calculations predict this behavior for a CO mode of neutral phylloquinone. The negative band at 1654 cm⁻¹ in the FTIR difference spectrum is therefore due to a CO mode of neutral phylloquinone. More specifically, calculations on a phylloquinone model molecule with the C₄O group hydrogen bonded predict that the 1654 cm⁻¹ band is due to the non hydrogen bonded C₁O mode of neutral phylloquinone.     

Reaction of N-hydroxyguanidine with the ferrous-oxy state of a heme peroxidase cavity mutant: A model for the reactions of nitric oxide synthase

Yeast cytochrome c peroxidase was used to construct a model for the reactions catalyzed by the second cycle of nitric oxide synthase. The R48A/W191F mutant introduced a binding site for N-hydroxyguanidine near the distal heme face and removed the redox active Trp-191 radical site. Both the R48A and R48A/W191F mutants catalyzed the H₂O₂ dependent conversion of N-hydroxyguanidine to N-nitrosoguanidine. It is proposed that these reactions proceed by direct one-electron oxidation of NHG by the Fe⁺⁴O center of either Compound I (Fe⁺⁴O, porph⁺) or Compound ES (Fe⁺⁴O, Trp⁺). R48A/W191F formed a Fe⁺²O₂ complex upon photolysis of Fe⁺²CO in the presence of O₂, and N-hydroxyguanidine was observed to react with this species to produce products, distinct from N-nitrosoguanidine, that gave a positive Griess reaction for nitrate + nitrite, a positive Berthelot reaction for urea, and no evidence for formation of NO. It is proposed that HNO and urea are produced in analogy with reactions of nitric oxide synthase in the pterin-free state.     

Modification of aminoallenylidene complexes of chromium via exchange of the C3-bound amino group

The aminoallenylidene(pentacarbonyl)chromium complexes [(CO)₅CrCCC(NR¹R²)Ph] (1a-c) react with dimethylamine by addition of the amine to the C1C2 bond of the allenylidene ligand to give alkenyl(amino)carbene complexes [(CO)₅CrC(NMe₂)CHC(NR¹R²)Ph] (2a-c) (R¹ = Me: R² = Me (a), Ph (b); R¹ = Et: R² = Ph (c)). In contrast, addition of a large excess (usually 20 equivalents) of ammonia or primary amines, H₂NR, to solutions of [(CO)₅CrCCC(NMe₂)Ph] (1a) affords the aminoallenylidene complexes [(CO)₅CrCCC(NHR)Ph] (1d-w) in which the dimethylamino group is replaced by NH₂ or NHR, respectively. In addition to simple amines such as methylamine, butylamine, and aniline, amines carrying a functional group (allylamine, propargylamine) and amino acid esters as well as amino terpenes and amino sugars can be used to displace the NMe₂ substituent. Usually the Z isomer (with respect to the partial C3-N double bond) is formed exclusively. Products derived from addition of H₂NR to the C1C2 bond of 1a are not observed. The amino group in 1d-w is rapidly deprotonated by excess of amine to form iminium alkynyl chromates [1d-w]⁻, thus protecting 1d-w from addition of free amine to either C3 or across the C1C2 bond. The iminium alkynyl chromates are readily reprotonated by acids or by chromatography on wet SiO₂ to reform 1d-w.     

Formation of an observable intermediate during the reduction of [Co(NH3)5CN] by CRR(OH) radicals

CR¹R²OH, Rⁱ = CH₃ or H, react with the complex [Co^III(NH₃)₅CN]²⁺ to form an observable intermediate probably via bonding to the nitrogen of the cyanide. This intermediate isomerizes to form a second intermediate. The second intermediate decomposes into Co²⁺(aq), 5NH₄⁺, CN⁻ and R¹R²CO. The plausible structures of the intermediates are discussed. The radicals CH³, CH₂CHO, , and are considerably less reactive towards this complex, the formation of intermediates in their presence is not observed.     

Peroxynitrite detoxification by ferryl Mycobacterium leprae truncated hemoglobin O

During infection, Mycobacterium leprae is faced with the host macrophagic environment limiting the growth of the bacilli. However, (pseudo-)enzymatic detoxification systems, including truncated hemoglobin O (Ml-trHbO), could allow this mycobacterium to persist in vivo. Here, kinetics of peroxynitrite (ONOOH/ONOO⁻) detoxification by ferryl Ml-trHbO (Ml-trHbOFe(IV)O), obtained by treatment with H₂O₂, is reported. Values of the second-order rate constant for peroxynitrite detoxification by Ml-trHbOFe(IV)O (i.e., of Ml-trHbOFe(III) formation; k_on), at pH 7.2 and 22.0 °C, are 1.5 × 10⁴ M⁻¹ s⁻¹, and 2.2 × 10⁴ M⁻¹ s⁻¹, in the absence of and presence of physiological levels of CO₂ (∼1.2 × 10⁻³ M), respectively. Values of k_on increase on decreasing pH with a pK_a value of 6.7, this suggests that ONOOH reacts preferentially with Ml-trHbOFe(IV)O. In turn, peroxynitrite acts as an antioxidant of Ml-trHbOFe(IV)O, which could be responsible for the oxidative damage of the mycobacterium. As a whole, Ml-trHbO can undertake within the same cycle H₂O₂ and peroxynitrite detoxification.     

EPR properties of a g=2 broad signal trapped in an S1 state in Ca-depleted Photosystem II

We investigated a new EPR signal that gives a broad line shape around g=2 in Ca²⁺-depleted Photosystem (PS) II. The signal was trapped by illumination at 243 K in parallel with the formation of Y_Z. The ratio of the intensities between the g=2 broad signal and the Y_Z signal was 1:3, assuming a Gaussian line shape for the former. The g=2 broad signal and the Y_Z signal decayed together in parallel with the appearance of the S₂ state multiline at 243 K. The g=2 broad signal was assigned to be an intermediate S₁X state in the transition from the S₁ to the S₂ state, where X represents an amino acid radical nearby manganese cluster, such as D1-His337. The signal is in thermal equilibrium with Y_Z. Possible reactions in the S state transitions in Ca²⁺-depleted PS II were discussed.     

Gas-phase molecular structures of substituted 1,3-bisketenes: A challenge for theory and experiment

Molecular structures of dimethylbis(trimethylsilylketyl)silane (Me₂Si[C(SiMe₃)CO]₂), dimethylbis(trimethylgermylketyl)silane (Me₂Si[C(GeMe₃)CO]₂), and dimethylbis(trimethylstannylketyl)germane (Me₂Ge[C(SnMe₃)CO]₂) have been studied in the gas phase by electron diffraction accompanied by high level ab initio and DFT calculations. Extensive theoretical conformational analyses of the molecules in the vapour predicted a possibility of existence of two types of conformers with small energy differences. The first type had gauche-gauche arrangements of the ketenyl groups in the central C(CO)XC(CO) fragments directed away from each other. The second type had nearly syn-gauche arrangements of the ketenyl groups. In addition, the energy differences were found to depend on the level of computations used. The experimental analysis, in turn, was unable to distinguish between different conformers due to the large number of similar overlapping distances. The experimental data were fitted by an averaged single-conformer model, which nevertheless allowed reliable determination of bonds and bonded angles in the molecules. Main experimental (r_h1) structural parameters for Me₂Si[C(SiMe₃)CO]₂, Me₂Si[C(GeMe₃)CO]₂, and Me₂Ge[C(SnMe₃)CO]₂, i.e. Me₂X[C(YMe₃)CO]₂ (X,Y = Si, Ge, Sn), are (X-C)_mean 187.7(1) pm, 194.6(2) pm, 216.1(3) pm; (Y-C)_mean, 187.7(1) pm, 188.8(8) pm, 194.6(4) pm; (CC)_mean, 135.3(5) pm, 131.6(5) pm, 131.5(13) pm; (CO)_mean, 117.0(7) pm, 117.4(7) pm, 119.0(11) pm; (C-H)_mean, 110.6(7) pm, 110.0(4) pm, 109.1(13) pm; (X(Y)-CC)_mean, 114.4(2)°, 115.6(1)°, 115.6(2)°; (C-X(Y)-C_Me)_mean, 108.3(3)°, 108.4(3)°, 108.9(13)°; C(2)-C(1)-Y(4)-C(10), −19(6)°, 5(4)°, −9(10)°; C(7)-C(6)-Y(9)-C(38),−22(7)°, −32(3)°, −9(10)°; C(2)-C(1)-X(5)-C(6), 128(4)°, 142(1)°, 108(9)°; C(7)-C(6)-X(5)-C(1), 92(6)°, 115(2)°, 108(9)°, respectively.     

Dark production of reactive oxygen species in photosystem II membrane particles at elevated temperature: EPR spin-trapping study

In our study, EPR spin-trapping technique was employed to study dark production of two reactive oxygen species, hydroxyl radicals (OH) and singlet oxygen (¹O₂), in spinach photosystem II (PSII) membrane particles exposed to elevated temperature (47 °C). Production of OH, evaluated as EMPO-OH adduct EPR signal, was suppressed by the enzymatic removal of hydrogen peroxide and by the addition of iron chelator desferal, whereas externally added hydrogen peroxide enhanced OH production. These observations reveal that OH is presumably produced by metal-mediated reduction of hydrogen peroxide in a Fenton-type reaction. Increase in pH above physiological values significantly stimulated the formation of OH, whereas the presence of chloride and calcium ions had the opposite effect. Based on our results it is proposed that the formation of OH is linked to the thermal disassembly of water-splitting manganese complex on PSII donor side. Singlet oxygen production, followed as the formation of nitroxyl radical TEMPO, was not affected by OH scavengers. This finding indicates that the production of these two species was independent and that the production of ¹O₂ is not closely linked to PSII donor side.