Dynamics of purple sulfur bacteria in a meromictic saline Lake Shunet (Khakassia,Siberia) in 2007–2013

According to the results of seasonal monitoring, in 2007–2013 purple sulfur bacteria morphologically similar to Thiocapsa sp. Shira_1 (AJ633676 in EMBL/GenBank) predominated in the anoxygenic phototrophic community of the water column of the meromictic Lake Shira (Khakassia, Siberia). No pronounced seasonal periodicity in the total cell number in the water column was revealed during the period of observation. In some years cell number during the period when the lake was covered with ice was reliably higher than in summer. The absence of seasonal periodicity was probably due to the low amplitude of seasonal variations in temperature and illumination in the redox zone, resulting from its relatively deep location (12–16 m). The year-to-year dynamics was characterized by a reliable decrease of the total cell number in 2009–2010 and maxima in 2007 and 2011–2012. Canonical correlation analysis revealed that water temperature in the redox zone was the best predictor of the PSB abundance in Lake Shira. Water temperature, in turn, depended on the depth of mixing of the water column. Intense mixing in 2009–2011 was probably responsible for decreased PSB abundance in the lake. On the other hand, the absence of deep winter mixing, resulting in stable conditions in the chemocline, favored the preservation of relatively high PSB biomass. Prediction of circulation depth, which depends mainly on the weather conditions and dynamics of the water level, is required for prediction of PSB abundance in Lake Shira. These results may be useful for paleolimnological reconstructions of the history of the lake based on the remnants of purple sulfur bacteria in bottom sediments.     

Some generalizations based on stratification and vertical mixing in meromictic Lake Shira,Russia, in the period 2002–2009

In a brackish, temperate, 24-m-deep Lake Shira, the profiles of salinity, temperature, oxygen and sulfide concentrations were measured on a seasonal basis from 2002 to 2009. The lake was shown to be meromictic with autumnal overturn restricted to mixolimnion. The depth of mixolimnion and position of oxic–anoxic interface varied annually. The spring mixing processes contribute to the formation of mixolimnion in autumn. The exceptionally windy spring of 2007 caused the deepening of mixolimnion in the winter of 2008. The winter position of oxic–anoxic interface was affected by the position of lower boundary of mixolimnion in all winters. The salinity in the winter mixolimnion increased compared with the autumn because of freezing out of salts from the upper water layers meters during ice formation and their dissolution in water below. The profiles of salinity and temperature were simulated by the mathematical 1-D model of temperature and salinity conditions taking into account ice formation. The simulated profiles generally coincided with the measured ones. The coincidence implies that simplified one-dimensional model can be applied to roughly describe salinity and density profiles and mixing behavior of Lake Shira.     

Seasonal Rotifer Dynamics in the Long-term (1969–2002) Record from Lake Kinneret (Israel)

Long-term (1969–2002) data record of biomass distribution of rotifers in Lake Kinneret is combined with previously published information on their metabolic activity and newly calculated population dynamics parameters to synthesize a model of their seasonal dynamics in Lake Kinneret. Nineteen rotifer species were recorded in routine samples collected in Lake Kinneret (Israel) in 7 offshore (deeper than 5 m), stations, at 12 discrete depths during 1969–2002. Organisms were sorted and counted (including external egg carrying females), biomass was measured and calculated for the entire lake stock (g_w.w m⁻²; mg l⁻¹). Rates of grazing, respiration and production were measured experimentally at three different temperature ranges. Results were extrapolated to the lake community for months with similar temperatures. Rotifera comprised 7% of total zooplankton biomass in Lake Kinneret whilst Cladocera and Copepoda 58 and 35% respectively. Rotifers were found to be more abundant during December–June and decline in summer months. Monthly (1969–2001) means indicated total grazing capacity of rotifers as 11%, respiration as 9% and production as 3.7% of the total zooplankton metabolic activity. Positive relations were indicated between rotifer and small bodied cladoceran numerical concentrations. Population growth models suggest that rotifers are not food limited in Lake Kinneret but that fish predation plays an important role in regulating abundance in spring-summer and fall.     

Phylogenetic analysis of the non-structural (NS) gene of influenza a viruses isolated in Kazakhstan in 2002–2009

Although the important role of the non-structural (NS1 and NEP) gene of influenza A in virulence of the virus is well established, our knowledge about the extent of variation in the NS gene pool of influenza A viruses in their natural reservoirs in Kazakhstan is incomplete. 17 influenza A viruses of different subtypes were studied in this paper. Seven types of haemagglutinin and five different neuraminidase subtypes in eight combinations were found among the isolated viruses. A comparison of nucleotide sequences of isolated viruses revealed a substantial number of silent mutations, which results in high degree of homology in amino acid sequences. By phylogenetic analysis it was shown that two distinct gene pools, corresponding to both NS allele A with 5 Clades and B, were present at the same time in Kazakhstan. The degree of variation within the alleles was very low. In our study allele A viruses had a maximum of 5% amino acid divergence in Clade while allele B viruses had only 4% amino acid divergence.     

Hydrochemical balance of Itkul–Shira lake system (Khakassia,Russian Federation)

The water and hydrochemical balance of Shira and Itkul lakes, located in the arid (steppe) zone in the Republic of Khakassia (Russian Federation), has been calculated. It is shown that Lake Itkul can be considered a drained lake, which significantly determines the basic differences of the hydrochemical balance in the two water bodies. The outflow of water from Itkul to Shira is, on average, 6791000 m3/year, and the average outflow of dissolved salts is 35697 t/year. Lake Shira can be considered a drainless water body with an evaporation mechanism of formation of the chemical composition of its waters, and Lake Itkul is considered a flowing water reservoir. The salt concentration in Itkul is not as high as that in Shira due to the lower influence of evaporation on the formation of the chemical composition of waters and time of their interaction. It has been assumed that this phenomenon is regular, rather than exceptional, for the arid zone of Northern and Central Asia.     

Ecology and Phenology of Freshwater Ostracods in Lake Gölköy (Bolu,Turkey)

Seventeen ostracod species were recorded from Lake Gölköy (Bolu, Turkey) between January 2000 and December 2001. Limnocythere inopinata is a new record for the Bolu region. Canonical Correspondence Analysis (CCA) explained 73% of the correlation between species and environmental variables, suggesting that the occurrence of many species is temporally variable, and is related to seasonal changes in physico-chemical conditions. The four most frequently occurring cosmopolitan ostracod species (Candona neglecta, Darwinula stevensoni, Physocypria kraepelini, and Cypridopsis vidua) accounted for more than 70% of the species recorded. Water temperature, dissolved oxygen (DO), and redox potential were the most affective variables on the species occurrence. Two species (C. vidua, I. bradyi) were positively correlated to redox potential, while such a correlation was negative for P. kraepelini. The most frequently occurring species C. neglecta was most closely related to the changes in redox potential, whereas C. vidua and D. stevensoni showed a positive correlation to water temperature. Negative strong correlation (p<0.01) was found between pH and I. bradyi, but correlation was positive and weak for C. vidua. Some species (e.g. L. inopinata) showed no clear relationship with any of those environmental variables. UPGMA clustering of species based on their occurrence in different ecological conditions revealed three main species assemblages. Analysis of species phenology using the ‘Ostracod Watch Model’ showed that temporal patterns of occurrence could be similar among species with similar ecological preferences. The current status of the lake is discussed based on the present study.     

Annual pollen spectrum variations in the air of Bratislava (Slovakia): years 2002–2009

Pollen grains in the atmosphere of Bratislava were quantitatively and qualitatively analysed during an 8-year period (2002–2009) using a Burkard volumetric pollen trap. The mean annual total pollen grain count recorded during this period was 36,608, belonging to 34 higher plant taxa (22 trees and/or shrubs and 12 herbaceous species). The maximum annual total pollen grain count (50,563) was recorded in 2003 and the minimum (14,172) in 2009. The taxa contributing the highest concentration of pollen grains were Betula, Urticaceae, Cupressaceae-Taxaceae, Populus, Pinus, Poaceae and Ambrosia. During the study period, there was a remarkable increase in the number of pollen grains from February to April, with the highest daily mean pollen counts recorded in April. Total pollen concentration began to decrease markedly in May, but there was a second increase between July and August, followed by a decrease in September. The timing and length of the pollen seasons varied. Betula and Poaceae showed a rather constant 2-year fluctuating rhythm. The relationships between airborne pollen concentration and meteorological variables were assessed. Based on these results, the first pollen calendar in Slovakia has been constructed for the area of Bratislava, which provides a great deal of useful and important information.     

Specific carbonate–microbe interactions in the modern microbialites of Lake Alchichica (Mexico)

The role of microorganisms in microbialite formation remains unresolved: do they induce mineral precipitation (microbes first) or do they colonize and/or entrap abiotic mineral precipitates (minerals first)? Does this role vary from one species to another? And what is the impact of mineral precipitation on microbial ecology? To explore potential biogenic carbonate precipitation, we studied cyanobacteria–carbonate assemblages in modern hydromagnesite-dominated microbialites from the alkaline Lake Alchichica (Mexico), by coupling three-dimensional imaging of molecular fluorescence emitted by microorganisms, using confocal laser scanning microscopy, and Raman scattering/spectrometry from the associated minerals at a microscale level. Both hydromagnesite and aragonite precipitate within a complex biofilm composed of photosynthetic and other microorganisms. Morphology and pigment-content analysis of dominant photosynthetic microorganisms revealed up to six different cyanobacterial morphotypes belonging to Oscillatoriales, Chroococcales, Nostocales and Pleurocapsales, as well as several diatoms and other eukaryotic microalgae. Interestingly, one of these morphotypes, Pleurocapsa-like, appeared specifically associated with aragonite minerals, the oldest parts of actively growing Pleurocapsa-like colonies being always aragonite-encrusted. We hypothesize that actively growing cells of Pleurocapsales modify local environmental conditions favoring aragonite precipitation at the expense of hydromagnesite, which precipitates at seemingly random locations within the biofilm. Therefore, at least part of the mineral precipitation in Alchichica microbialites is most likely biogenic and the type of biominerals formed depends on the nature of the phylogenetic lineage involved. This observation may provide clues to identify lineage-specific biosignatures in fossil stromatolites from modern to Precambrian times.     

Variability of the start of the growing season in Fennoscandia, 1982–2002

Fennoscandia is characterized by a large degree of climatic diversity. Vegetation phenology may respond differently to climate change according to the climatic gradients within the region. To map the annual and spatial variability of the start of the growing season (SOS) in Fennoscandia, the twice-monthly GIMMS-NDVI satellite dataset was used. The data set has an 8 × 8 km² spatial resolution and covers the period from 1982 to 2002. The mapping was done by applying pixel-specific threshold values to the NDVI data. These threshold values were determined form surface phenology data on birch (Betula sp.). Then, we produced NDVI based maps of SOS for each of the 21 years. Finally, the time differences between the SOS and the last day of snow cover, as well as dates of passing different temperatures, were analyzed for 21 meteorological stations. The analyses showed that 1985 was the most extreme year in terms of late SOS. In terms of early SOS, the year 1990 was by far the most extreme. Locally, the SOS has an average range of 1 month between the earliest and latest recorded SOS, with a trend towards a bigger range in the oceanic parts. The results indicate that a 1°C increase in spring temperatures in general corresponds to an advancement of 5–6 days in SOS. However, there is a clear trend according to the degree of oceanity, with a 1°C increase in the most oceanic parts corresponding roughly to 7–9 days earlier SOS, compared to less than 5 days earlier in the continental parts.     

The influence of road salts on the salinity and the meromictic stability of Lake Svinsjøen,southeastern Norway

Primarily as a result of road salting, the water masses ofLake Svinsjøen, a small meromictic lake in southeasternNorway, have been subject to great changes in salinity duringthe period 1947–1995. The greatest change in saltconcentration has occurred in the upper part of themonimolimnion (depth 10–15 m) where mean conductivityincreased 104.2 per cent, from 143 to 292 S cm^–1. Inthe upper mixolimnion (depth 0-5 m), mean conductivity rosefrom 130 to 238 S cm^–1 during the same period. Theions responsible for the salinity changes were Na⁺ andCl^– from de-icing salts, and Ca²⁺ and Cl^– fromsalts used to keep down dust from roads. Further sources ofCa²⁺ are the road asphalt and increased weathering andleaching of the lime-rich rocks caused by acid precipitation,the main source of the additional inputs of SO tothe lake. The salinity changes caused major changes inmeromictic stability, S . In the period1947-1966, S increased by 24 g cm cm^–2,and the maximum level of meromictic stability, 125 gcm^–2, was found in 1966. As a result of higher rate ofsalt accumulation in the upper part of the monimolimnion andin the mixolimnion, S decreased by 30 g cmcm^–2 during the period 1966-1991, and a simultaneousrise in the chemocline took place. In the period 1991-1995 anadditional decrease of 26 g cm cm^–2 occurred. Continuedectogenic inputs of salts through processes typical of thetime period investigated will in future further weaken thelake's meromictic stability, and may cause the demise ofmeromixis in Lake Svinsjøen, a development which may haveimportant implications for primary productivity of thelake.     

Ecology,morphology and physiology of Chroothece richteriana (Rhodophyta,Stylonematophyceae) in the highly calcareous Río Chícamo,south-east Spain

The ecology of Chroothece was studied in the highly calcareous Río Chícamo, south-east Spain, in order to explain its success there, but rarity elsewhere. The river, which originates mainly from an underground aquifer, has water with high conductivity, sulphate and nitrate but low phosphate concentrations, the latter mainly organic. Chroothece occurs in mats and in lobed colonies reaching 4 cm in the broadest dimension. The colony surface consists of one layer of cells, each of which is attached to a stalk, which dichotomizes when the cell divides; stalks often extend to the colony base. The central region of many mat cells and almost all colony cells has a yellow to orange-brown colour, associated with the numerous lipid droplets densely covering the surface of the pyrenoid and arms of the star-shaped chloroplast. Field material and laboratory isolates indicate that stalk formation occurs under moderate P limitation and both stalks and cell sheath show high phosphatase activities. This also occurred in a culture collection strain maintained for 30 years in a very P-rich medium, but then transferred to a moderately P-limiting medium (c. 0.9 mg l^?1). We suggest that colony formation is initiated by aggregation of motile cells following P pulses in the water. Comparisons are made with Rivularia, a competitor in this nitrate-rich river, in spite of being a N₂-fixer. One difference is that Chroothece cells lie at the periphery of the colonies and are therefore exposed to maximum sunlight, whereas Rivularia trichomes grow inside colonies with photoprotection by scytonemin. However, the ability to withstand heavy grazing pressure may be an especially important factor favouring Rivularia here.     

Ecological Monitoring of the Water Area of Port Vostochnyi (Wrangel Bay) in the Sea of Japan (1995–2002)

Benthic surveys carried out in 1989 (literature data), 1995, and 2001 (original data) revealed changes in the structure of soft bottom communities of Wrangel Bay (Peter the Great Bay, Sea of Japan), where a deep-water port of Vostochnyi is situated. The functioning of the port has caused no significant environmental pollution by heavy metals, hydrocarbons, and other pollutants. Bottom dredging and the siltation induced by it have drastically lowered the benthos biomass, changed benthic communities, and altered their trophic structure. Sestonophages have disappeared nearly altogether being replaced by detrivores. The ecological state of the benthos is characterized as unstable.     

Seasonal variation of phototrophic picoplankton in Lake Biwa (1994–1998)

Seasonal abundances of phototrophic picoplankton (PP) and heterotrophic nanoflagellates in Lake Biwa were studied from 1994 to 1998. Seasonal variation in cell volume and biomass of the phototrophic picoplankton were also studied. PP were counted using disposable glass microscopic plates, which gave superior accuracy to sample filtration onto membrane filters. Phycoerythrin-rich rod-shaped cyanobacteria (PEC), one of the major components of the picoplankton community, were sparse (about 10⁴ cells ml ^–1) in winter and began to increase in April. Several PEC peaks were observed during the period of thermal stratification, and a rapid fall took place after October or November. In the northern basin, PEC peaked during late June and early July in 3 of the 5 years, and in late summer in the remaining years. Phycocyanin-rich rod-shaped cyanobacteria (PCC) were abundant in the southern basin and were present in smaller numbers in the eutrophic nearshore area of the northern basin; they peaked several times during the period from July to October. Seasonal variations of these two kinds of picoplankton were correlated with seasonal changes in water temperature. Phycoerythrin-rich cylinder-shaped cyanobacteria exhibited narrow peaks in July, their abundance declining as the year progressed. The density of heterotrophic nanoflagellates was greatest in early spring. Average cell volume of PEC was largest in winter, then decreased gradually to a minimum in late summer; after the fall, it recovered to the winter cell volume. This change can likely be attributed to the depletion of nitrogen in the warmer seasons.     

Requirements of the cytosolic iron–sulfur cluster assembly pathway in Arabidopsis

The assembly of iron–sulfur (Fe–S) clusters requires dedicated protein factors inside the living cell. Striking similarities between prokaryotic and eukaryotic assembly proteins suggest that plant cells inherited two different pathways through endosymbiosis: the ISC pathway in mitochondria and the SUF pathway in plastids. Fe–S proteins are also found in the cytosol and nucleus, but little is known about how they are assembled in plant cells. Here, we show that neither plastid assembly proteins nor the cytosolic cysteine desulfurase ABA3 are required for the activity of cytosolic aconitase, which depends on a [4Fe–4S] cluster. In contrast, cytosolic aconitase activity depended on the mitochondrial cysteine desulfurase NFS1 and the mitochondrial transporter ATM3. In addition, we were able to complement a yeast mutant in the cytosolic Fe–S cluster assembly pathway, dre2, with the Arabidopsis homologue AtDRE2, but only when expressed together with the diflavin reductase AtTAH18. Spectroscopic characterization showed that purified AtDRE2 could bind up to two Fe–S clusters. Purified AtTAH18 bound one flavin per molecule and was able to accept electrons from NAD(P)H. These results suggest that the proteins involved in cytosolic Fe–S cluster assembly are highly conserved, and that dependence on the mitochondria arose before the second endosymbiosis event leading to plastids.     

Ant–aphid relations in the south of Western Siberia (Hymenoptera: Formicidae; Hemiptera: Aphididae)

Aphids, the main suppliers of energy-rich honeydew, play an important role in the life of ants. However, the data on the trophobiotic ant–aphid associations in the majority of regions are still limited. We present the first data on the ant–aphid relations in the south of Western Siberia. Investigations were carried out in the most typical biotopes of forest-steppe and steppe zones in the territory of Novosibirsk and Kurgan regions (Russia) during 1993–2014. There were revealed 35 species of ants and 198 species of aphids. Detected 456 ant–aphid associations involved 28 ant species and 134 myrmecophilous aphids. Seven ant species were found to consume honeydew of 9 non-myrmecophilous aphids, scraping it from the plant. This behaviour is typical of subdominant and subordinate ants which do not protect their foraging areas. Ants associate with various numbers of aphid species. About 36% of ants attended aphid colonies of less than 5 species. The largest number of myrmecophilous aphids is associated with L. niger (Linnaeus, 1758) (103 species), Formica pratensis Retzius, 1783 (50), Formica rufa group (25–33), F. (Serviformica) fusca Linnaeus, 1758 (26) and F. (S.) cunicularia Latreille, 1798 (27). Different ants play unequal roles in the formation of trophobiotic interactions with aphids. Due to complex territorial and foraging behaviour, including high functional specialization among honeydew collectors, dominant ants of Formica s. str. are one of the leaders in this process. The role of L. niger and Formica ants of the subgenus Serviformica requires further detailed investigation.     

Controlling factors of spring–summer phytoplankton succession in Lake Taihu (Meiliang Bay,China)

The spring–summer successions of phytoplankton and crustacean zooplankton were examined weekly in Meiliang Bay of the subtropical Lake Taihu in 2004 and 2005. During the study period, the ecosystem of Meiliang Bay was characterized by (i) clearly declined nitrogen compounds (nitrate, TN, and ammonium) and slowly increased phosphorus compounds (TP and SRP), (ii) increased total phytoplankton density and rapid replacement of chlorophyta (mainly Ulothrix) by cyanobacteria (mainly Microcystis), and (iii) rapid replacement of large-sized crustaceans (Daphnia and Moina) by small-sized ones (Bosmina, Limnoithona, and Ceriodaphnia). Results from the CCA and correlation analysis indicate that the spring-summer phytoplankton succession was primarily controlled by abiotic factors. Cyanobacteria were mainly promoted by increased temperature and decreased concentrations of nitrogen compounds. The pure contribution of crustacean was low for the variation of phytoplankton suggesting a weak top-down control by crustacean zooplankton in the subtropical Lake Taihu. Electronic supplementary material  The online version of this article (doi:) contains supplementary material, which is available to authorized users. Handling editor: L. Naselli-Flores     

Participation of algal–bacterial community in the formation of modern stromatolites in Cock Soda Lake,Altai Region

Modern dolomite stromatolites are found in Cock Soda Lake (Kulunda Steppe) at a salinity of 100–200 g/L and pH of 10. The mineralogical analysis has revealed the presence in the stromatolites of Ca?Mg-carbonates of various compositions. The organisms–edificators of the phototrophic community developing in the lake are determined. They are identified as a part of the mineralized biota (cyanobacteria, bacteria, and eukaryotic alga Ctenocladus circinnatus). Morphological and ultrastructural features of exopolysaccharides secreted by cyanobacteria and bacteria dominant in the phototrophic community are characterized. It is shown that polysaccharides secreted primarily by cyanobacteria have the utmost importance for the formation of stromatolites in Petukhovskoe Soda Lake.     

Species composition of phytobenthos in the littoral of Lake Xolotlán (Managua)

The species composition of the phytobenthos in the littoral of Lake Xolotlán (Managua) was determined. Sampling was carried out in November 1987 (end of the rainy season) and in July–August 1988 (rainy season). Sixty-eight taxa were identified;viz. 47 Bacillariophyceae, 13 Cyanophyta and 8 Chlorophyta. The presence of diatom species likeNavicula veneta, Nitzschia amphibia andNitzschia palea indicate eutrophic conditions, high ionic concentration, alkaline conditions and intense organic pollution.