Diversity and Connectance in an Industrial Context

The ecological metaphor of industrial ecology is a proven conceptual tool, having spawned an entire field of interdisciplinary research that explores the intimate linkages between industry and its underlying natural systems. Besides its name and a number of borrowed concepts, however, industrial ecology has no formal relationship with the ecological sciences. This study explores the potential for further interdisciplinary collaboration by testing whether some of the same quantitative analysis techniques used in community ecology research can have meaning in an industrial context. Specifically, we applied the ecological concepts of connectance and diversity to an analysis of Burnside Industrial Park in Halifax, Nova Scotia. Our results demonstrate that these ecological tools show promise for use in industrial ecology. We discuss the meaning of connectance and diversity concepts in an industrial context and suggest next steps for future studies. We hope that this research will help to lay the groundwork of an ecologically inspired tool kit for analyzing industrial ecosystems.     

Connectance and parasite diet breadth in flea-mammal webs

The number of links in webs of species interactions, which lies at the heart of the biodiversity-stability debate, has given rise to controversy during the last 20 yr. Studies exploring these web properties have mainly focused on symmetric webs where each species can potentially feed on any other species; asymmetric webs such as host-parasite webs, where one set of species feed on another set of species, have been overlooked. However, food webs are incomplete without parasites and the study of parasite-host sub-web properties deserves attention. Here, using a large database involving 33 regional interaction webs between mammals and their flea parasites, we found a negative relationship between species richness and host-parasite connectance. We suggest that some phylogenetic constraints on flea diet may explain our observed patterns because we found that parasite diet breadth, measured as host taxonomic diversity, was invariant along our host richness gradient. We found that the slope of the logarithmic relationship between the number of realized links and species richness is lower than slope values reported for food webs. We suggest that connectance may not respond to increasing species richness as rapidly in host-parasite webs as in predator-prey food webs due to stronger coevolutionary requirements.     

Evolution of development: beyond bicoid

The Bicoid-based anterior patterning system of Drosophila embryogenesis appears to be unique to higher dipterans. A new study suggests how this may have evolved out of an alternative mechanism based on cooperating Orthodenticle and Hunchback proteins, the two mechanisms intersecting at the level of downstream target genes.     

Adaptive nature of the transition phases in development: the case of Sorghum bicolor

An increase in tolerance to salinity is induced in Sorghum bicolor by exposure to a sublethal concentration of NaCl during early vegetative development. The phase of competence for induction of this response, termed salt adaptation, is well defined in time and it coincides with the emergence of the first adventitious roots. The link between these events was investigated. Competence for salt adaptation varies among genotypes. It is shown that competence is especially high for genotypes in which the link between the seminal root and the shoot is reduced during emergence of the adventitious root. These data relate the capacity for salt adaptation with development in the absence of NaCl, suggesting that: (i) functional integration of the adventitious roots within the whole plant has an adaptive nature in normal development; (ii) salt adaptation results from an integration of the environmental constraint (NaCl) during this developmental readjustment. It is concluded that perturbations generated by emergence of a new organ are the cause of rapid variations in sensitivity required to open a competence window.     

Epigenetic events in mammalian germ-cell development: reprogramming and beyond

The epigenetic profile of germ cells, which is defined by modifications of DNA and chromatin, changes dynamically during their development. Many of the changes are associated with the acquisition of the capacity to support post-fertilization development. Our knowledge of this aspect has greatly increased- for example, insights into how the re-establishment of parental imprints is regulated. In addition, an emerging theme from recent studies is that epigenetic modifiers have key roles in germ-cell development itself--for example, epigenetics contributes to the gene-expression programme that is required for germ-cell development, regulation of meiosis and genomic integrity. Understanding epigenetic regulation in germ cells has implications for reproductive engineering technologies and human health.     

Cytoplasmic polyadenylation in development and beyond.

Maternal mRNA translation is regulated in large part by cytoplasmic polyadenylation. This process, which occurs in both vertebrates and invertebrates, is essential for meiosis and body patterning. In spite of the evolutionary conservation of cytoplasmic polyadenylation, many of the cis elements and trans-acting factors appear to have some species specificity. With the recent isolation and cloning of factors involved in both poly(A) elongation and deadenylation, the underlying biochemistry of these reactions is beginning to be elucidated. In addition to early development, cytoplasmic polyadenylation is now known to occur in the adult brain, and there is circumstantial evidence that this process occurs at synapses, where it could mediate the long-lasting phase of long-term potentiation, which is probably the basis of learning and memory. Finally, there may be multiple mechanisms by which polyadenylation promotes translation. Important questions yet to be answered in the field of cytoplasmic polyadenylation are addressed.     

Indirect Energy Flows in Niche Model Food Webs: Effects of Size and Connectance

Indirect interactions between species have long been of interest to ecologists. One such interaction type takes place when energy or materials flow via one or more intermediate species between two species with a direct predator-prey relationship. Previous work has shown that, although each such flow is small, their great number makes them important in ecosystems. A new network analysis method, dynamic environ approximation, was used to quantify the fraction of energy flowing from prey to predator over paths of length greater than 1 (flow indirectness or FI) in a commonly studied food web model. Web structure was created using the niche model and dynamics followed the Yodzis-Innes model. The effect of food web size (10 to 40 species) and connectance (0.1 to 0.48) on FI was examined. For each of 250 model realizations run for each pair of size and connectance values, the FI of every predator-prey interaction in the model was computed and then averaged over the whole network. A classification and regression tree (CART) analysis was then used to find the best predictors of FI. The mean FI of the model food webs is 0.092, with a standard deviation of 0.0279. It tends to increase with system size but peaks at intermediate connectance levels. Of 27 potential predictor variables, only five (mean path length, dominant eigenvalue of the adjacency matrix, connectance, mean trophic level and fraction of species belonging to intermediate trophic levels) were selected by the CART algorithm as best accounting for variation in the data; mean path length and the dominant eigenvalue of the adjacency matrix were dominant.     

Salicylic acid beyond defence: its role in plant growth and development

In recent years salicylic acid (SA) has been the focus of intensive research due to its function as an endogenous signal mediating local and systemic plant defence responses against pathogens. It has also been found that SA plays a role during the plant response to abiotic stresses such as drought, chilling, heavy metal toxicity, heat, and osmotic stress. In this sense, SA appears to be, just like in mammals, an 'effective therapeutic agent' for plants. Besides this function during biotic and abiotic stress, SA plays a crucial role in the regulation of physiological and biochemical processes during the entire lifespan of the plant. The discovery of its targets and the understanding of its molecular modes of action in physiological processes could help in the dissection of the complex SA signalling network, confirming its important role in both plant health and disease. Here, the evidence that supports the role of SA during plant growth and development is reviewed by comparing experiments performed by exogenous application of SA with analysis of genotypes affected by SA levels and/or perception.     

Pubertal timing and the development of psychopathology in adolescence and beyond

This article is part of a Special Issue “Puberty and Adolescence”.     

Connectance determines invasion success via trophic interactions in model food webs

Human induced global change has greatly altered the structure and composition of food webs through the invasion of non‐native species and the extinction of native species. Much attention has been paid to the effects of species deletions on food web structure and stability. However, recent empirical evidence suggests that for most taxa local species richness has increased as successful invasions outpace extinctions at this scale. This pattern suggests that food webs, which represent feeding interactions at the local scale, may be increasing in species richness. Knowledge of how food web structure relates to invasive species establishment and the effect of successful invaders on subsequent food web structure remains an unknown but potentially important aspect of global change. Here we explore the effect of food web topology on invasion success in model food webs to develop hypotheses about how the distribution of biodiversity across trophic levels affects the success of invasion at each trophic level. Our results suggest a connectance (C) based framework for predicting invasion success in food webs due to the way that C constrains the number of species at each trophic level and thus the number of potential predators and prey for an invader at a given trophic level. We use the relationship between C and the proportion of species at each trophic level in 14 well studied food webs to make the following predictions; 1) the success of basal invaders will increase as C increases due to the decrease in herbivores in high C webs, 2) herbivore invasion success will decrease as C increases due to the decrease in the proportion of basal species and increase in intermediate species and omnivores in high C webs. 3) Top predator invasion success will increase as C increases due to the increase in intermediate prey species. However, it is not clear how the relative influence of trophic structure compares to empirically known predictors of invasion success such as invader traits, propagule pressure, and resource availability.     

Biochemical changes during seed development in sorghum (Sorghum bicolor)

Grain dry weight accumulation, soluble sugars, starch, protein, fat and ash contents were studied in developing grains of eight sorghum cultivars. The     

Perturbation in leaves of salt-treated Sorghum: elements for interpretation of the normal development as an adaptive response

Developmental windows are specific periods of sensitivity in which a perturbation may be adaptively integrated. In Sorghum bicolor , two developmental windows which enable adaptive adjustment to salinity (increase in tolerance) have been described during vegetative development. A third developmental window is open during the transition between vegetative and reproductive development. This third developmental window was analysed using morphological markers (specific malformations on leaves), and their relationship with vegetative and reproductive events. A positive link was observed between fertility and malformations on the last leaf. We concluded that this late window enables an adaptive adjustment of reproductive development, counteracting the negative effect of salt adaptation on fertility. Developmental windows open following rapid changes in growth of the different organs. They permit adaptive adjustments to emergence or senescence of various organs. This phenomenon is integrated within normal development, but developmental windows are enlarged for plants exposed to perturbation and for their progeny.     

The genotype-phenotype correlation in Pompe disease

Pompe disease is an autosomal recessive lysosomal glycogen storage disorder that is caused by acid α-glucosidase (GAA) deficiency and is due to pathogenic sequence variations in the corresponding GAA gene. The correlation between genotypes and phenotypes is strict, in that patients with the most severe phenotype, classic infantile Pompe disease, have two pathogenic mutations, one in each GAA allele, that prevent the formation of GAA or totally obliterates its function. All patients with less progressive phenotypes have at least one sequence variation that allows normal or low level synthesis of GAA leading to the formation of analytically measurable, low level GAA activity in most cases. There is an overall trend of finding higher GAA enzyme levels in patients with onset of symptoms in adulthood when compared to patients who show clinical manifestations in early childhood, aged 0-5 years, with a rapidly progressive course, but who lack the severe characteristics of classic infantile Pompe disease. However, several cases have been reported of adult-onset disease with very low GAA activity, which in all those cases corresponds with the GAA genotype. The clinical diversity observed within a large group of patients with functionally the same GAA genotype and the same c.-32-13C?>?T haplotype demonstrates that modifying factors can have a substantial effect on the clinical course of Pompe disease, disturbing the GAA genotype-phenotype correlation. The present day challenge is to identify these factors and explore them as therapeutic targets.     

Netrins: beyond the brain

Named after the Sanskrit word netr, which means 'one who guides', the netrin family of secreted proteins provides migrational cues in the developing central nervous system. Recently, netrins have also been shown to regulate diverse processes (such as cell adhesion, motility, proliferation, differentiation and, ultimately, cell survival) in a number of non-neuronal tissues. In some cases, netrins affect these functions through non-classic netrin receptors, prompting a renewed interest in these factors in and beyond the nervous system.