The Distribution of Microbial Communities in Anaerobic and Aerobic Zones of a Shallow Coastal Plain Aquifer

Abstract Randomly amplified polymorphic DNA (RAPD) fingerprinting was used to determine the genetic similarity of whole-community DNA extracts from unattached microorganisms in several groundwater wells. The study site was a shallow coastal plain aquifer on the Eastern Shore of Virginia that contains distinct regions of anaerobic and aerobic groundwater. Several wells in each region were sampled, and principal component and cluster analyses showed a clear separation of the microbial communities from the two chemical zones of the aquifer. Within these zones, there was no relationship between the genetic relatedness of a pair of communities and their spatial separation. Two additional sets of samples were taken at later times, and the same clear separation between communities in the different zones of the aquifer was observed. The specific relationships between wells within each zone changed over time, however, and the magnitude and direction of these changes corresponded to concurrent changes in the groundwater chemistry at each well. Together, these results suggest that local variation in groundwater chemistry can support genetically distinct microbial communities, and that the composition of the microbial communities can follow seasonal fluctuations in groundwater chemistry. Received: 25 May 1999; Accepted: 4 August 1999; Online Publication: 9 December 1999     

Presence of Nitrate-Accumulating Sulfur Bacteria and Their Influence on Nitrogen Cycling in a Shallow Coastal Marine Sediment

Nitrate flux between sediment and water, nitrate concentration profile at the sediment-water interface, and in situ sediment denitrification activity were measured seasonally at the innermost part of Tokyo Bay, Japan. For the determination of sediment nitrate concentration, undisturbed sediment cores were sectioned into 5-mm depth intervals and each segment was stored frozen at −30°C. The nitrate concentration was determined for the supernatants after centrifuging the frozen and thawed sediments. Nitrate in the uppermost sediment showed a remarkable seasonal change, and its seasonal maximum of up to 400 μM was found in October. The directions of the diffusive nitrate fluxes predicted from the interfacial concentration gradients were out of the sediment throughout the year. In contrast, the directions of the total nitrate fluxes measured by the whole-core incubation were into the sediment at all seasons. This contradiction between directions indicates that a large part of the nitrate pool extracted from the frozen surface sediments is not a pore water constituent, and preliminary examinations demonstrated that the nitrate was contained in the intracellular vacuoles of filamentous sulfur bacteria dwelling on or in the surface sediment. Based on the comparison between in situ sediment denitrification activity and total nitrate flux, it is suggested that intracellular nitrate cannot be directly utilized by sediment denitrification, and the probable fate of the intracellular nitrate is hypothesized to be dissimilatory reduction to ammonium. The presence of nitrate-accumulating sulfur bacteria therefore may lower nature's self-purification capacity (denitrification) and exacerbate eutrophication in shallow coastal marine environments.     

The Influence of Environmental Variables on the Distribution and Abundance of Three Elasmobranchs in Tomales Bay, California

We tested the hypothesis that temperature, salinity, and dissolved oxygen affect elasmobranch distribution and abundance in Tomales Bay, California, with monthly longline samples over a 20 month period. We used a Poisson regression under generalized least squares and found that temperature and salinity were the most important factors determining the distribution and abundance of the three most common elasmobranch species, bat ray, Myliobatis californica, leopard shark, Triakis semifasciata, and brown smoothhound shark, Mustelis henlei. Females of all three species were more abundant than males throughout the Bay, and were most abundant in the warmer, more saline inner bay. All three species apparently left Tomales Bay in late fall as water temperatures in the bay decreased to <10–12° C, and returned in early spring after temperatures increased to > 10° C. Three of 257 bat rays tagged in Tomales Bay were recaptured, all within 1km of their tagging location despite having been free for up to 583d.     

Influence of Environmental Gradients on the Abundance and Distribution of Mycobacterium spp. in a Coastal Lagoon Estuary

Environmental mycobacteria are of increasing concern in terms of the diseases they cause in both humans and animals. Although they are considered to be ubiquitous in aquatic environments, few studies have examined their ecology, and no ecological studies of coastal marine systems have been conducted. This study uses indirect gradient analysis to illustrate the strong relationships that exists between coastal water quality and the abundance of Mycobacterium spp. within a U.S. mid-Atlantic embayment. Mycobacterium species abundance and water quality conditions (based on 16 physical and chemical variables) were examined simultaneously in monthly samples obtained at 18 Maryland and Virginia coastal bay stations from August 2005 to November 2006 (n = 212). A quantitative molecular assay for Mycobacterium spp. was evaluated and applied, allowing for rapid, direct enumeration. By using indirect gradient analysis (environmental principal-components analysis), a strong linkage between eutrophic conditions, characterized by low dissolved-oxygen levels and elevated nutrient concentrations, and mycobacteria was determined. More specifically, a strong nutrient response was noted, with all nitrogen components and turbidity measurements correlating positively with abundance (r values of >0.30; P values of <0.001), while dissolved oxygen showed a strong negative relationship (r = −0.38; P = 0.01). Logistic regression models developed using salinity, dissolved oxygen, and total nitrogen showed a high degree of concordance (83%). These results suggest that coastal restoration and management strategies designed to reduce eutrophication may also reduce total mycobacteria in coastal waters.Environmental mycobacteria, or nontuberculous mycobacteria (NTM), include all species of mycobacteria other than those in the Mycobacterium tuberculosis complex and M. leprae. In general, NTM are aerobic, acid-fast, gram-positive, non-spore-forming, nonmotile organisms found as free-living saprophytes in soil and water (12, 14, 20, 21, 35). However, several members of this group can cause serious disease in humans, including pulmonary infections, cervical lymphadenitis, ulcerative necrosis, skin infections, and disseminated infections associated primarily with autoimmune disorders (12, 29). For example, disseminated infection with the Mycobacterium avium complex can occur in up to 40% of late-stage AIDS patients in developed countries (43). NTM can also have costly and problematic effects on wild and domesticated animals (17, 23). Thus, understanding the sources and reservoirs of these bacteria has become a priority in recent years (12, 34).While the mode of infection has been poorly established for many cases involving NTM, water is commonly implicated as either a source or a vector (12, 43). NTM are considered to be ubiquitous in the environment and have been cultured globally from samples obtained from freshwaters and marine natural waters (12), swimming pools and hot tubs (11, 25), and drinking water supplies (12, 13), among others. However, only a limited number of attempts have been made to examine the association of their distribution and abundance with environmental parameters (1, 21, 24). The abundance of the M. avium complex was found to correlate positively with water temperature and levels of zinc and humic and fulvic acids and negatively with the dissolved-oxygen content and pH in brown-water swamps in the southeastern United States (24). In a study of Finnish brook waters, acidic conditions, along with the presence of peatlands, chemical oxygen demand, increased precipitation, water color, and concentrations of several metals, were found to favor total NTM (20, 21). However, recent efforts with samples from the Rio Grande River in the United States found positive correlations with the presence of coliforms and Escherichia coli counts and negative correlations with chemical toxicity and water temperature in this alkaline, oligotrophic system (1). Although system-specific differences may be apparent, no attempts to examine mycobacterial ecology in marine and estuarine systems have been reported to date.Historically, researchers have relied on culture-based techniques for detection and enumeration of mycobacteria from environmental samples (1, 20, 21, 43). Because of the slow growth of many mycobacteria, culture from environmental samples requires decontamination, which can severely impact both the quantity and diversity of species recovered (18, 19). Recently, quantitative PCR (qPCR) has gained favor as a means of rapidly enumerating organisms or genes in environmental samples (5, 15, 38, 40). This method allows for the continuous monitoring of the reaction through the use of fluorescent reporter molecules or DNA stains. Because of this strategy, the reaction can be evaluated at the peak of the exponential phase, reducing errors of reagent depletion and assay efficiency associated with end point reads. Quantification is based on the principle that the amount of the starting template is directly proportional to the number of cycles required to reach the peak of the exponential phase, and is evaluated through the preparation of standards.Like many coastal lagoon estuaries, the shallow embayments bordering the Maryland and Virginia seaboard are highly susceptible to anthropogenic influence, as they are visited by millions of people annually for vacation and water-related recreation (44). While eutrophication and degraded environmental conditions have been generally linked to factors or organisms which can ultimately influence human health, little attention has been given to the response of bacteria (16, 45). In this paper, we describe our efforts to examine environmental influences on the abundance and distribution of NTM in a dynamic estuarine system.     

The Distribution of the Number of Maxima in a Cyclic Sequence

A simple statistical method is presented which tests for non-randomness in a cyclic sequence. The distribution of the statistic is tabulated for short sequences, and a large sample approximation is derived. Significant values of the statistic are given for sequences of length up to 52. Easily used computer programs to carry out appropriate calculations are presented.     

The Distribution of the Number of Maxima in a Cyclic Sequence

A simple statistical method is presented which tests for non-randomness in a cyclic sequence. The distribution of the statistic is tabulated for short sequences, and a large sample approximation is derived. Significant values of the statistic are given for sequences of length up to 52. Easily used computer programs to carry out appropriate calculations are presented.     

Assessing Disease and Mortality among Small Cetaceans Stranded at a World Heritage Site in Southern Brazil

Cetaceans are considered environmental sentinels and their health often reflects either anthropogenic or natural spatio-temporal disturbances. This study investigated the pathological findings and mortality of small cetaceans with the aim of detecting hazards and monitoring health trends in a high-biodiversity area. Between 2007 and 2012, 218 stranded cetaceans were recorded on the Paraná coast, southern Brazil. Fifty-seven (26.1%) of these animals, including 50 Sotalia guianensis, 2 Pontoporia blainvillei, 2 Stenella frontalis, 1 Stenella longirostris, 1 Tursiops truncatus and 1 Globicephala melas were necropsied and samples were collected for histopathology. Causes of death were determined in 46 of the 57 (80.7%) animals and most (30 or 65.2%) were ascribed to anthropogenic activities, including fisheries bycatch (28/30) and trauma (2/30). The remaining 16 fatalities were considered natural, and attributed to pneumonia (10/16), emaciation (3/16), septicemia (1/16), neonatal pathology (1/16) and choking via food obstruction (1/16). Irrespective of the cause, bronchointerstitial pneumonia, associated with parasitism, lymphadenitis and membranous glomerulonephritis were common findings among all fatalities. These results suggest, that while anthropogenic activities are a leading cause of cetacean strandings in Paraná, underlying pre-existing diseases may contribute towards deaths. Although the studied area is considered a biosphere reserve by UNESCO, complex anthropogenic and natural interactions might be occurring, increasing cetacean susceptibility to hazards. This study may help facilitate developing an effective conservation plan for coastal cetaceans focusing on reducing fisheries interactions, habitat degradation and pollution as mechanisms for ultimately increasing species resilience.     

Influence of Environmental Variables on Gambierdiscus spp. (Dinophyceae) Growth and Distribution

Benthic dinoflagellates in the genus Gambierdiscus produce the ciguatoxin precursors responsible for the occurrence of ciguatera toxicity. The prevalence of ciguatera toxins in fish has been linked to the presence and distribution of toxin-producing species in coral reef ecosystems, which is largely determined by the presence of suitable benthic habitat and environmental conditions favorable for growth. Here using single factor experiments, we examined the effects of salinity, irradiance, and temperature on growth of 17 strains of Gambierdiscus representing eight species/phylotypes (G. belizeanus, G. caribaeus, G. carolinianus, G. carpenteri, G. pacificus, G. silvae, Gambierdiscus sp. type 4–5), most of which were established from either Marakei Island, Republic of Kiribati, or St. Thomas, United States Virgin Island (USVI). Comparable to prior studies, growth rates fell within the range of 0–0.48 divisions day^-1. In the salinity and temperature studies, Gambierdiscus responded in a near Gaussian, non-linear manner typical for such studies, with optimal and suboptimal growth occurring in the range of salinities of 25 and 45 and 21.0 and 32.5°C. In the irradiance experiment, no mortality was observed; however, growth rates at 55μmol photons · m^-2 · s^-1 were lower than those at 110–400μmol photons · m^-2 · s^-1. At the extremes of the environmental conditions tested, growth rates were highly variable, evidenced by large coefficients of variability. However, significant differences in intraspecific growth rates were typically found only at optimal or near-optimal growth conditions. Polynomial regression analyses showed that maximum growth occurred at salinity and temperature levels of 30.1–38.5 and 23.8–29.2°C, respectively. Gambierdiscus growth patterns varied among species, and within individual species: G. belizeanus, G. caribaeus, G. carpenteri, and G. pacificus generally exhibited a wider range of tolerance to environmental conditions, which may explain their broad geographic distribution. In contrast, G. silvae and Gambierdiscus sp. types 4–5 all displayed a comparatively narrow range of tolerance to temperature, salinity, and irradiance.     

Influence of Seasonal Environmental Variables on the Distribution of Presumptive Fecal Coliforms around an Antarctic Research Station

Factors affecting fecal microorganism survival and distribution in the Antarctic marine environment include solar radiation, water salinity, temperature, sea ice conditions, and fecal input by humans and local wildlife populations. This study assessed the influence of these factors on the distribution of presumptive fecal coliforms around Rothera Point, Adelaide Island, Antarctic Peninsula during the austral summer and winter of February 1999 to September 1999. Each factor had a different degree of influence depending on the time of year. In summer (February), although the station population was high, presumptive fecal coliform concentrations were low, probably due to the biologically damaging effects of solar radiation. However, summer algal blooms reduced penetration of solar radiation into the water column. By early winter (April), fecal coliform concentrations were high, due to increased fecal input by migrant wildlife, while solar radiation doses were low. By late winter (September), fecal coliform concentrations were high near the station sewage outfall, as sea ice formation limited solar radiation penetration into the sea and prevented wind-driven water circulation near the outfall. During this study, environmental factors masked the effect of station population numbers on sewage plume size. If sewage production increases throughout the Antarctic, environmental factors may become less significant and effective sewage waste management will become increasingly important. These findings highlight the need for year-round monitoring of fecal coliform distribution in Antarctic waters near research stations to produce realistic evaluations of sewage pollution persistence and dispersal.     

Spatiotemporal Variation of Bacterial Assemblages in a Shallow Subtropical Coastal Lagoon in Southern Brazil

A study on the bacterioplankton of Conceição Lagoon (27°34′ S–48°27′ W), Southern Brazil, was carried out in July 2005 (austral winter) and January 2006 (austral summer) to characterize the bacterial spatiotemporal distribution and to determine the heterotrophic and photoautotrophic bacterial dominance in hypoxic/oxic stratified waters. Bacterial abundance increased significantly (p?5 (winter) to 3.21?×?10⁶ cells mL^?1 (summer), heterotrophic coccus/rod-shaped (HCR) cells from 7.00?×?10⁴ to 3.60?×?10⁶ cells mL^?1, and heterotrophic filamentous (HF) bacteria from 2.90?×?10³ to 2.74?×?10⁵ cells mL^?1. Bacterial biovolumes also increased in summer with mean biovolumes of CCY ranging from 0.38 to 1.37 μm³, HCR cells from 0.31 to 1.12 μm³, and HF from 3.32 to 11.34 μm³. Principal component analysis showed that salinity, temperature, and light were the abiotic factors that better explained the temporal variability of bacterial assemblages. Bacterial heterotrophy dominated in the lagoon, excepted by the southern and part of central sector in January 2006, when autotrophic-dominated microbial community occurred. Spatially, bacterial assemblages were influenced by nutrient gradient, oxygen, and salinity with a positive relationship between biovolumes and nutrients and a negative relationship between abundance of coccus cyanobacteria and nutrients. area revealed a singular temporal pattern with hypoxic bottom waters in winter and oxygen-rich waters appearing in summer related with the availability of light and predominant microbes. Thus, oxygen consumption/production is likely to be regulated by the amount of light reaching the bottom, stimulating the production of oxygen by oxygenic phototrophs.     

Distribution of Fungi in a Small Wood

Statistical analysis of the distribution of Basidiomycetes ina small wood (32 acres) shows significant features of non-uniformdistribution. Some parts of this can be correlated with theage of the forest cover. A second noticeable feature of thenon-uniform species is the apparent presence in all of aerialmethods of spore dissemination and even of structures suggestiveof adaptation to wind transport of the spores. It is neverthelesssuggested that the facts imply slow dispersal in the non-uniformspecies and possibly a dependence on insects for dissemination.     

The Influence of Hypoxia on the Concentrations of Cyclic Nucleotides in the Rat Brain

Abstract: In order to study the influence of hypoxia on cyclic nucleotides in the brain, we reduced arterial Po, for 15–30 min in lightly anaesthetised and artificially ventilated rats to obtain values ranging from about 45 to about 10 mm Hg. In an additional group (arterial Po₂ 18–22 mm Hg), the tissue hypoxia was aggravated by moderate arterial hypotension (mean arterial blood pressure about 80 mm Hg). In all animals, electrocortical activity was recorded. Cyclic GMP concentrations in cerebral cortex were unchanged in all groups but one. In that group, in which tissue hypoxia was severe enough to induce a suppression-burst EEG pattern and a measurable reduction in the adenylate energy charge, cyclic GMP concentrations were slightly increased ( p < 0.05). Cyclic AMP concentrations remained unaltered at all degrees of hypoxia studied. It is concluded that changes in cyclic nucleotides in brain tissue occur first at such severe degrees of hypoxia of the duration studied that function and metabolism are profoundly altered.     

A Vigorous Specialized Microbial Food Web in the Suboxic Waters of a Shallow Subtropical Coastal Lagoon

To examine the extent of the microbial food web in suboxic waters of a shallow subtropical coastal lagoon, the density and biomass of bacteria and protozooplankton were quantified under different dissolved oxygen (DO) levels. In addition, bottom waters of a stratified site were compared with bottom waters of a homogeneous site under periods of high and low biological oxygen production/consumption in the lagoon. At the stratified site, microbial biomass decreased with oxygen decline, from oxia to suboxia, with a recovery of the initial total biomass after a 20-day period of persistent suboxia. A peak in density and biomass of purple sulfur bacteria (PSB) (90 μg C L(-1)) occurred in the suboxic waters 20 days prior to the peak in biomass of ciliates >50 μm (Loxophyllum sp. of 150 μm) (160 μg C L(-1)), demonstrating a top down biomass control. Ciliates >50 μm were positively correlated with PSB and bacteriochlorophyll a (photosynthetic pigment of PSB). Total protozoan biomass reached 430 μg C L(-1) in the suboxic waters of the stratified site, with ciliates >50 μm accounting for 90% of the total ciliate biomass and of 55 % of biomass of protozoa. At the homogeneous site, total protozoan biomass was only 66 μg C L(-1), where flagellates and ciliates <25 μm were the dominant microorganisms. Therefore, as light is available for primary producers in the bottom waters of shallow stratified coastal lagoons or estuaries, one can expect that high primary production of PSB may favor a specialized microbial food web composed by larger microorganisms, accessible to zooplankton that tolerate low DO levels.     

Current Patterns and the Distribution of Benthic Habitats in a Coastal Lagoon of Mauritius

The oceanography around Mauritius (in the Western Indian Ocean) remains largely unstudied, hence there is an acute scarcity of marine environmental data for management purposes. Rigorous water depth and current measurements were made on a system of grids inside Le Morne lagoon (in the south western part of Mauritius) in March–April 2000 to generate semi-quantitative models of general flow pattern in the form of contour maps using SURFER 6 computer programme. A simultaneous survey on composition of bottom cover was conducted to examine possible relationships with current speed. A separate investigation recorded surface and bottom currents prevailing amongst various habitat types to demonstrate the nature of the resulting damping effect on surface current speed. Significant correlations generated from data analysis were discussed as a basis for real biophysical relationships. Some of the limitations in the current analysis and some of the seemingly contradictory results are acknowledged and addressed in the light of the general assumption that the structure of the lagoon is conditioned by current speeds. Much stronger current speeds just outside the reef (e.g. >0.5 m s⁻¹) than inside the lagoon (e.g. <0.32 m s⁻¹) indicated a substantial slow-down of water current by the reef barrier. Inshore bottom currents were weaker than at the surface and current speed correlated well with water depth. Bottom and surface current directions were generally similar, i.e. going northward during flood tide and southward during ebb. The lagoon would be classified as ‘restricted’, exhibiting well-defined tidal circulation, which is modified by wind forcing. Dense fields of branching Acropora corals slowed down surface current speed by as much as 87%, but the relationship between current speed and bottom cover appears to be variable, depending on the specific location within the lagoon under consideration. The contour plots of the flow pattern model generated reasonably high qualitative modelling of spatial current speed pattern in the lagoon, with stronger currents generally along the reef areas, at the reef passes and in the deeper zones. However, these plots did not match closely those displaying distribution of bottom cover, thus confirming results obtained from pair-wise correlation tests, namely the lack of a significant relationship between current speed and bottom cover. Most of the correlations would appear to represent biological relationships, with different types of communities enabling or excluding other types. Thus, the biophysical structure of the lagoon would be driven a priori by the distribution and abundance of corals rather than current speeds, which contradicts the above hypothesis. Recurrent natural hazards subject the benthic communities to a state of ‘perpetual knock-down and recovery’. Recovery, however, can be seriously impaired by the chronic ongoing degradation of the coastal marine environment of Mauritius. An urgent review of its coastal zone management and protection strategy would be desirable for the island.     

Annual Variation of Environmental Variables, Phytoplankton Species Composition and Photosynthetic Parameters in a Coastal Lagoon

Physical–chemical variables, phytoplankton biomass, speciescomposition and photosynthesis–irradiance (P-I) parameterswere analysed during 1 year in the Santo André Lagoon,SouthwestPortugal – a land-locked coastal ecosystem withtemporary connections with the sea. When the lagoon stayed closedthe observed phytoplankton blooms were mainly caused by Prorocentrumminimum, a potentially toxic dinoflagellate. It was dominantduring most of the year but the seawater inflow to the lagoontriggered a decrease in phytoplankton biomass and an abruptshift in species composition. The maximum photosynthetic rate(P_max) ranged from 2.0 to 22.5 mg C (mg chlorophyll a)^–1h^–1 and the light saturation index (I_k), ranged from 5.2to 335.0 µE m^–2 s^–1, with winter minima andsummer maxima. P_max and I_k were both positively correlated totemperature. Abundance ofP. minimum was associated with highnitrate concentrations whereas diatoms appear when ammonium,salinity and wind velocity are high. A mathematical model todescribe photosynthetic rate as a function of irradiance andtemperature [P (I, t)] was applied to the samples in which P.minimum was the dominant species     

The Distribution of Bacterio- and Mesozooplankton in the Coastal Waters of the White and Barents Seas

The total population density and the biomass of bacterioplankton, mesozooplankton, and phosphate-accumulating bacteria (PAB) were estimated during the 2000–2001 summer–autumn seasons in the coastal waters of the White and Barents Seas, which are subject to the action of tidal and sea currents, the inflow of riverine waters, and anthropogenic impact. In the shallow estuarine waters with salinities of 6.5–32 near the Chernaya, Pesha, and Pechora River mouths, the population of PAB fluctuated from 0.1 to 9.1 million cells/ml (0–36% of the total bacterial population). In pelagic seawaters, which are low in phosphates (12–50 g/l) and are characterized by an increased iron/phosphorus ratio (2.0–3.6), bacterioplankton amounted to 0.1–1.6 million cells/ml and was mainly represented by small organisms with a volume of 0.08–0.15 m³, commonly lacking intracellular polyphosphates. In the pelagic zone of the Barents Sea, the biomass of mesozooplankton (B _z) was comparable with that of bacterioplankton (B _b = 39–175 mg/m³), the B _b/B _z ratio being 1.4–4.6. Off the Varandeiskii, Pechora, and Kolguyev oil terminals, B _b increased to 155–300 mg/m³ and the B _b/B _z ratio rose to 1.4 to 50.3 (with an average value of 20.9), presumably due to the severe anthropogenic impact on these waters. In this case, the dense population of bacterioplankton (0.9–7.6 million cells/ml) was mainly represented by large cells (0.12–0.76 m³ in volume), most of which (3–43% of the total bacterioplankton population) contained polyphosphates. The chemical composition of these waters was characterized by an elevated content of the total phosphorus (65–128 g/l) and by a low iron/phosphorus ratio (0.9–1.2).     

The Influence of Selected Environmental Variables on Fish Assemblage Structure in a Range of Southeast African Estuaries

This study compared the ichthyofaunal assemblages in 10 Eastern Cape Province, South Africa, estuaries to identify whether there were any structural variations between the assemblages and to determine the environmental and physical factors linked to these variations. Species belonging to both the marine migrant and estuarine resident groups, by consistent representation within each estuary grouping, were responsible for the separation of fish assemblage structures between the different types of systems. The data further revealed that fish assemblages in the three main types of estuaries investigated were distinct, linked primarily to estuary mouth status and estuary size.     

The Influence of Habitat Variables on Bird Communities in Forest Remnants in Costa Rica

This study examined the effects of forest structure (tree species richness, canopy height, percent canopy cover, understory density, tree density and DBH) and avian species traits (nest type and indicator list status) on the diversity, abundance and dissimilarity of bird communities in forest remnants and reforestation areas adjacent to Costa Rican banana plantations. Bird species richness and abundance were significantly related to tree species richness, canopy height and canopy cover in multiple linear regressions, the latter two forest structure variables being the best statistical predictors. Stratification of analyses by bird species indicator categories improved fits of regressions, because correlations with environmental variables differed in sign for different guilds of birds, a result likely to hold for other avifaunas. Analysis of avifauna dissimilarities among sites demonstrated that the species composition of bird communities was highly correlated with forest structure and tree species composition. Logistic regressions indicated that birds making protected (cavity, burrow, pendant, sphere and covered) nests were 2–6 times more likely to be present in the study avifauna than birds making open (cup, saucer, platform and scrape) nests and indicators of disturbed habitats were 11 times more likely to be present than indicators of primary forest. The forest structure data used were simple and inexpensive to collect, and data on avian traits were drawn from the literature. Thus, these methods could easily be replicated at other locations and would be valuable management aids and biodiversity assessment tools for conservation planning.     

The Distribution of Francisella-like Bacteria Associated with Coastal Waters in Norway

We report the diversity and distribution of Francisella species in Norwegian coastal and fresh waters following a nationwide survey in which water and sediment samples were collected from locations spanning almost the entire Norwegian coastline. In total, samples were obtained from 149 and 64 seawater and freshwater sites, respectively. DNA extracts from these environmental samples were initially screened by polymerase chain reaction (PCR) using Francisella genus-specific 16S rDNA primers. Positive samples were then amplified with genus-specific primers targeting Francisella succinate dehydrogenase A gene and Francisella philomiragia group-specific sequences for the SAICAR synthetase/phosphoribosylamine-glycine ligase gene. Francisella-related bacteria were identified in approximately 30% of seawater sampled sites, mainly in southern Norway, although a single positive sample was identified in the far north of the country. No PCR positives were identified from the freshwater sources. Sequences related to recognised species, both pathogenic and environmental, were identified, with the majority closely associated with F. philomiragia. However, a number of identified sequences probably represent previously undescribed species. Our data provide evidence of a significant background of Francisella spp. in geographical areas associated with outbreaks of fish francisellosis in Norway.