Ammonia-oxidizing Archaea in the Arctic Ocean and Antarctic coastal waters

We compared abundance, distributions and phylogenetic composition of Crenarchaeota and ammonia-oxidizing Archaea (AOA) in samples collected from coastal waters west of the Antarctic Peninsula during the summers of 2005 and 2006, with samples from the central Arctic Ocean collected during the summer of 1997. Ammonia-oxidizing Archaea and Crenarchaeota abundances were estimated from quantitative PCR measurements of amoA and 16S rRNA gene abundances. Crenarchaeota and AOA were approximately fivefold more abundant at comparable depths in the Antarctic versus the Arctic Ocean. Crenarchaeota and AOA were essentially absent from the Antarctic Summer Surface Water (SSW) water mass (0–45 m depth). The ratio of Crenarchaeota 16S rRNA to archaeal amoA gene abundance in the Winter Water (WW) water mass (45–105 m depth) of the Southern Ocean was much lower (0.15) than expected and in sharp contrast to the ratio (2.0) in the Circumpolar Deep Water (CDW) water mass (105–3500 m depth) immediately below it. We did not observe comparable segregation of this ratio by depth or water mass in Arctic Ocean samples. A ubiquitous, abundant and polar-specific crenarchaeote was the dominant ribotype in the WW and important in the upper halocline of the Arctic Ocean. Our data suggest that this organism does not contain an ammonia monooxygenase gene. In contrast to other studies where Crenarchaeota populations apparently lacking amoA genes are found in bathypelagic waters, this organism appears to dominate in well-defined, ammonium-rich, near-surface water masses in polar oceans.     

Genetic diversity of small eukaryotes from the coastal waters of Nansha Islands in China

Population structures and genetic diversity of the small eukaryotic plankton from the coastal waters of the Nansha Islands in China were investigated. Two genes libraries using 18S rDNA of the marine small eukaryotes were constituted, and 323 clones were identified within alveolates (more than 43%), acanthareas, viridiplantaes, and stramenopiles. Many novel clones were detected in the two libraries, including two groups of alveolates and two clades related to both acanthareas and polycystineas. Several sequences unrelated to any other known eukaryotes may represent early branches in the phylogenetic tree. Our results reveal that there is a high diversity and abundance of small eukaryotes in the marine regions of China.     

Biological responses to permafrost thaw slumping in Canadian Arctic lakes

1. Rapid environmental change occurring in high‐latitude regions has the potential to cause extensive thawing of permafrost. Retrogressive thaw slumps are a particularly spectacular form of permafrost degradation that can significantly impact lake–water chemistry; however, to date, the effects on aquatic biota have received little attention. 2. We used a diatom‐based palaeolimnological approach featuring a paired lake study design to examine the impact of thaw slumping on freshwater ecosystems in the low Arctic of western Canada. We compared biological responses in six lakes affected by permafrost degradation with six undisturbed, reference lakes. 3. Slump‐affected lakes exhibited greater biological change than the paired reference systems, although all systems have undergone ecologically significant changes over the last 200 years. Four of the six reference systems showed an increase in the relative abundance of planktonic algal taxa (diatoms and scaled chrysophytes), the earliest beginning about 1900, consistent with increased temperature trends in this region. 4. The response of sedimentary diatoms to thaw slumping was understandably variable, but primarily related to the intensity of disturbance and associated changes in aquatic habitat. Five of the slump‐affected lakes recorded increases in the abundance and diversity of periphytic diatoms at the presumed time of slump initiation, consistent with increased water clarity and subsequent development of aquatic macrophyte communities. Slump‐affected lakes generally displayed lower nutrient levels; however, in one system, thaw slumping, induced by an intense fire at the site in 1968, ostensibly led to pronounced nutrient enrichment that persists today. 5. Our results demonstrate that retrogressive thaw slumping represents an important stressor to the biological communities of lakes in the western Canadian Arctic and can result in a number of limnological changes. We also show that palaeolimnological methods are effective for inferring the timing and response of aquatic ecosystems to permafrost degradation. These findings provide the first long‐term perspective on the biological response to permafrost thaw, a stressor that will become increasingly important as northern landscapes respond to climate change.     

Climatic severity and the response to temperature elevation of Arctic aphids

• 1 Theory suggests that any given rise in temperature resulting from climate change will have its greatest effect on high Arctic ecosystems where growing seasons are short and temperatures low.
• 2 A small temperature rise, similar to that predicted for the middle of the next century, has profound effects on a population of the high Arctic, Dryas-feeding aphid Acyrthosiphon svalbardicum on Spitsbergen (Strathdee et al. 1993a).
• 3 Here comparative experiments on a closely related Dryas-feeding species, A. brevicorne, at two contrasting sub-Arctic sites are described. Together with the results from Spitsbergen these sites represent two colder sites (high Arctic and upland sub-Arctic) and one warmer site (lowland sub-Arctic).
• 4 Differential responses in aphid population density and overwintering egg production to temperature elevation support the hypothesis that the ecological effects are greatest at sites with the most severe climates; however, there is no similar gradient in advancement of host plant phenology with warming.

     

Environmental selection of marine stramenopile clades in the Arctic Ocean and coastal waters

Single-celled bacterial grazers are key components of marine ecosystems, and at times represent the dominant eukaryotes in the Arctic Ocean. Among these are small, phylogenetically diverse stramenopiles, known almost exclusively from their 18S rRNA gene sequences. Marine stramenopiles (MAST) have been found in the upper waters of the world ocean and in all Arctic seas. In particular, three sub-clades of MAST-1, MAST-1A, 1B and 1C co-occur in Arctic waters, but ecological and distributional details are lacking. Here, we have updated phylogenies of the MAST-1 clade to test whether there are Arctic-specific MAST-1 ecotypes. In addition, taking advantage of samples collected over 2 years as part of several Arctic cruises leading up to and during the International Polar Year, we applied sub-clade-specific probes and fluorescent in situ hybridization to describe the distribution of the three sub-clades in the Canadian Arctic. The three groups were found principally in the euphotic zone; however, evidence of Arctic ecotypes remains elusive. Some environment-specific separation among sub-clades was detected, with MAST-1C reaching significantly greater concentrations near the marginal ice zone, while MAST-1A and MAST-1B were associated with ice-covered and open-water stations, respectively. MAST-1B appeared to be able to persist at greater depths. Changing ice cover and mixing regimes are therefore expected to have an impact on the concentrations and distribution of these sub-clades, with possible downstream consequences on the marine food webs.     

Patterns and controlling factors of species diversity in the Arctic Ocean

Aim The Arctic Ocean is one of the last near‐pristine regions on Earth, and, although human activities are expected to impact on Arctic ecosystems, we know very little about baseline patterns of Arctic Ocean biodiversity. This paper aims to describe Arctic Ocean‐wide patterns of benthic biodiversity and to explore factors related to the large‐scale species diversity patterns. Location Arctic Ocean. Methods We used large ostracode and foraminiferal datasets to describe the biodiversity patterns and applied comprehensive ecological modelling to test the degree to which these patterns are potentially governed by environmental factors, such as temperature, productivity, seasonality, ice cover and others. To test environmental control of the observed diversity patterns, subsets of samples for which all environmental parameters were available were analysed with multiple regression and model averaging. Results Well‐known negative latitudinal species diversity gradients (LSDGs) were found in metazoan Ostracoda, but the LSDGs were unimodal with an intermediate maximum with respect to latitude in protozoan foraminifera. Depth species diversity gradients were unimodal, with peaks in diversity shallower than those in other oceans. Our modelling results showed that several factors are significant predictors of diversity, but the significant predictors were different among shallow marine ostracodes, deep‐sea ostracodes and deep‐sea foraminifera. Main conclusions On the basis of these Arctic Ocean‐wide comprehensive datasets, we document large‐scale diversity patterns with respect to latitude and depth. Our modelling results suggest that the underlying mechanisms causing these species diversity patterns are unexpectedly complex. The environmental parameters of temperature, surface productivity, seasonality of productivity, salinity and ice cover can all play a role in shaping large‐scale diversity patterns, but their relative importance may depend on the ecological preferences of taxa and the oceanographic context of regions. These results suggest that a multiplicity of variables appear to be related to community structure in this system.     

Seasonal occurrence of picocyanobacteria in the Greenland Sea and central Arctic Ocean

The seasonal occurrence of picocyanobacteria in the Greenland Sea and Arctic Ocean was investigated during four expeditions in May–June 1987 and 1988, August–October 1991, and November–December 1988 by epifluorescence microscopy. In early summer, the abundance of picocyanobacteria was related to water masses: they were nearly absent in polar water, whereas they occurred in high concentrations (up to 5470 cells ml^–1) in Atlantic Water. During autumn and beginning of winter, the abundances of picocyanobacteria remained around 10³ cells ml^–1. Their relative contribution to total picoplanktonic algal abundance increased from 0% during spring/summer to 70–80% in late autumn, as a result of a decrease in the abundance of eucaryotic picoalgae. Consequently, the impact of picocyanobacteria on Arctic epipelagic carbon and energy flow is of minor importance, and the strong contribution of picoplankton algae to biomass and primary productivity in Arctic seas has to be attributed to eucaryotic species.     

Footprints of climate change in the Arctic marine ecosystem

In this article, we review evidence of how climate change has already resulted in clearly discernable changes in marine Arctic ecosystems. After defining the term ‘footprint’ and evaluating the availability of reliable baseline information we review the published literature to synthesize the footprints of climate change impacts in marine Arctic ecosystems reported as of mid‐2009. We found a total of 51 reports of documented changes in Arctic marine biota in response to climate change. Among the responses evaluated were range shifts and changes in abundance, growth/condition, behaviour/phenology and community/regime shifts. Most reports concerned marine mammals, particularly polar bears, and fish. The number of well‐documented changes in planktonic and benthic systems was surprisingly low. Evident losses of endemic species in the Arctic Ocean, and in ice algae production and associated community remained difficult to evaluate due to the lack of quantitative reports of its abundance and distribution. Very few footprints of climate change were reported in the literature from regions such as the wide Siberian shelf and the central Arctic Ocean due to the limited research effort made in these ecosystems. Despite the alarming nature of warming and its strong potential effects in the Arctic Ocean the research effort evaluating the impacts of climate change in this region is rather limited.     

Responses of High Arctic wet sedge tundra to climate warming since 1980

The global climate is changing rapidly and Arctic regions are showing responses to recent warming. Responses of tundra ecosystems to climate change have been examined primarily through short‐term experimental manipulations, with few studies of long‐term ambient change. We investigated changes in above‐ and belowground biomass of wet sedge tundra to the warming climate of the Canadian High Arctic over the past 25 years. Aboveground standing crop was harvested from five sedge meadow sites and belowground biomass was sampled from one of the sites in the early 1980s and in 2005 using the same methods. Aboveground biomass was on average 158% greater in 2005 than in the early 1980s. The belowground biomass was also much greater in 2005: root biomass increased by 67% and rhizome biomass by 139% since the early 1980s. Dominant species from each functional group (graminoids, shrubs and forbs) showed significant increases in aboveground biomass. Responsive species included the dominant sedge species Carex aquatilis stans, C. membranacea, and Eriophorum angustifolium, as well as the dwarf shrub Salix arctica and the forb Polygonum viviparum. However, diversity measures were not different between the sample years. The greater biomass correlated strongly with increased annual and summer temperatures over the same time period, and was significantly greater than the annual variation in biomass measured in 1980–1983. Increased decomposition and mineralization rates, stimulated by warmer soils, were likely a major cause of the elevated productivity, as no differences in the mass of litter were found between sample periods. Our results are corroborated by published short‐term experimental studies, conducted in other wet sedge tundra communities which link warming and fertilization with elevated decomposition, mineralization and tundra productivity. We believe that this is the first study to show responses in High Arctic wet sedge tundra to recent climate change.     

Governance of Ice-Covered Areas: Rule Construction in the Arctic Ocean

This article recounts the negotiations and emergence of Article 234 concerning ice-covered areas in the UN Convention on the Law of the Sea. As Arctic shipping increases, more vessels and flag states may be subject to the provisions of Article 234, which permit coastal states to both prescribe and enforce special measures to protect the marine environment in ice-covered areas. The history of the Article 234, disclosed partially through declassified U.S. government documents, provides context for implementation of the provision by Arctic coastal states and flag states.     

Contribution of picoplankton to primary production in estuarine,coastal and equatorial waters of Brazil

Quantitative data on primary production of picoplankton are presented for three different Brazilian marine ecosystems: estuarine, coastal and oceanic. The size fraction from 0.45 μm to 1.0 μm was responsible for 3.0% to 28.5% of ¹⁴C uptake in estuarine waters; 18.5% to 40.4% in coastal waters, and 6.7% to 100.0% in oceanic waters, respectively. These results establish the importance of picoplankton as primary producers in different marine environments along the Brazilian waters.     

北极表层海水中氯代十六烷降解菌的多样性

[目的]为了研究北极地区表层海水中氯代十六烷(C16H33Cl)降解菌的多样性,并获得新的卤代烃降解菌资源.[方法]以C16H33Cl为唯一碳源和能源在4℃和250℃下对表层海水样品进行富集,通过平板分离鉴定可培养菌株,并验证其降解能力;同时利用变性梯度凝胶电泳(DGGE)分析降解菌群结构.[结果]从12个北极表层海水样品中富集分离得到112株可培养菌株.经过降解实验验证,发现19株菌株能够降解氯代十六烷,其中食烷菌(Alcanivorax)、红球菌(Rhodococcus)表现出很好的乳化和降解现象,海杆菌(Marinobacter)也有较好的降解效果.DGGE分析显示,富集驯化的降解菌群中主要优势菌为Alcanivorax,Parvibaculum和Thioclava属的菌株.[结论]北极海水中卤代烃降解菌主要是α-proteobacteria,γ-proteobacteria,Actinobacteria和Bacteroidetes.文章首次报道了北极海水卤代烷烃降解菌多样性,研究结果对于认识北极环境中的降解菌资源与生物多样性有参考价值.     

Increasing picocyanobacteria success in shelf waters contributes to long‐term food web degradation

Continental margins are disproportionally important for global primary production, fisheries and CO₂ uptake. However, across the Northeast Atlantic shelves, there has been an ongoing summertime decline of key biota—large diatoms, dinoflagellates and copepods—that traditionally fuel higher tropic levels such as fish, sea birds and marine mammals. Here, we combine multiple time series with in situ process studies to link these declines to summer nutrient stress and increasing proportions of picophytoplankton that can comprise up to 90% of the combined pico‐ and nanophytoplankton biomass in coastal areas. Among the pico‐fraction, it is the cyanobacterium Synechococcus that flourishes when iron and nitrogen resupply to surface waters are diminished. Our field data show how traits beyond small size give Synechococcus a competitive edge over pico‐ and nanoeukaryotes. Key is their ability to grow at low irradiances near the nutricline, which is aided by their superior light‐harvesting system and high affinity to iron. However, minute size and lack of essential biomolecules (e.g. omega‐3 polyunsaturated fatty acids and sterols) render Synechococcus poor primary producers to sustain shelf sea food webs efficiently. The combination of earlier spring blooms and lower summer food quantity and quality creates an increasing period of suboptimal feeding conditions for zooplankton at a time of year when their metabolic demand is highest. We suggest that this nutrition‐related mismatch has contributed to the widespread, ~50% decline in summer copepod abundance we observe over the last 60 years. With Synechococcus clades being prominent from the tropics to the Arctic and their abundances increasing worldwide, our study informs projections of future food web dynamics in coastal and shelf areas where droughts and stratification lead to increasing nutrient starvation of surface waters.     

The role of sea ice for vascular plant dispersal in the Arctic

Sea ice has been suggested to be an important factor for dispersal of vascular plants in the Arctic. To assess its role for postglacial colonization in the North Atlantic region, we compiled data on the first Late Glacial to Holocene occurrence of vascular plant species in East Greenland, Iceland, the Faroe Islands and Svalbard. For each record, we reconstructed likely past dispersal events using data on species distributions and genetics. We compared these data to sea-ice reconstructions to evaluate the potential role of sea ice in these past colonization events and finally evaluated these results using a compilation of driftwood records as an independent source of evidence that sea ice can disperse biological material. Our results show that sea ice was, in general, more prevalent along the most likely dispersal routes at times of assumed first colonization than along other possible routes. Also, driftwood is frequently dispersed in regions that have sea ice today. Thus, sea ice may act as an important dispersal agent. Melting sea ice may hamper future dispersal of Arctic plants and thereby cause more genetic differentiation. It may also limit the northwards expansion of competing boreal species, and hence favour the persistence of Arctic species.     

Local snow melt and temperature—but not regional sea ice—explain variation in spring phenology in coastal Arctic tundra

The Arctic is undergoing dramatic environmental change with rapidly rising surface temperatures, accelerating sea ice decline and changing snow regimes, all of which influence tundra plant phenology. Despite these changes, no globally consistent direction of trends in spring phenology has been reported across the Arctic. While spring has advanced at some sites, spring has delayed or not changed at other sites, highlighting substantial unexplained variation. Here, we test the relative importance of local temperatures, local snow melt date and regional spring drop in sea ice extent as controls of variation in spring phenology across different sites and species. Trends in long‐term time series of spring leaf‐out and flowering (average span: 18 years) were highly variable for the 14 tundra species monitored at our four study sites on the Arctic coasts of Alaska, Canada and Greenland, ranging from advances of 10.06 days per decade to delays of 1.67 days per decade. Spring temperatures and the day of spring drop in sea ice extent advanced at all sites (average 1°C per decade and 21 days per decade, respectively), but only those sites with advances in snow melt (average 5 days advance per decade) also had advancing phenology. Variation in spring plant phenology was best explained by snow melt date (mean effect: 0.45 days advance in phenology per day advance snow melt) and, to a lesser extent, by mean spring temperature (mean effect: 2.39 days advance in phenology per °C). In contrast to previous studies examining sea ice and phenology at different spatial scales, regional spring drop in sea ice extent did not predict spring phenology for any species or site in our analysis. Our findings highlight that tundra vegetation responses to global change are more complex than a direct response to warming and emphasize the importance of snow melt as a local driver of tundra spring phenology.     

北冰洋海域微食物环研究进展

海洋微食物环在海洋生态系统中起着重要作用.北冰洋因常年为海冰所覆盖,对微食物环的研究较为有限.现有研究表明,微食物环在北冰洋生态系统中的作用与海域和季节相关.近年来环境的快速变化、特别是夏季海冰覆盖面积的迅速减少,会对微食物环的结构和功能产生重大影响,已有研究显示其生态作用有望进一步提高.综合近年来已有的研究成果,对北冰洋微食物环的主要类群:原核生物、真核浮游植物、原生动物和浮游病毒等的基本生态特征进行了概述,讨论了各类群间的相互关系,并对未来的研究重点进行了展望.     

Characterization of the abiotic drivers of abundance of nearshore Arctic fishes

Fish are critical ecologically and socioeconomically for subsistence economies in the Arctic, an ecosystem undergoing unprecedented environmental change. Our understanding of the responses of nearshore Arctic fishes to environmental change is inadequate because of limited research on the physicochemical drivers of abundance occurring at a fine scale. Here, high‐frequency in situ measurements of pH, temperature, salinity, and dissolved oxygen were paired with daily fish catches in nearshore Alaskan waters of the Beaufort Sea. Due to the threat that climate change poses to high‐latitude marine ecosystems, our main objective was to characterize the abiotic drivers of abundance and elucidate how nearshore fish communities may change in the future. We used generalized additive models (GAMs) to describe responses to the nearshore environment for 18 fish species. Relationships between abundance and the physicochemical environment were variable between species and reflected life history. Each abiotic covariate was significant in at least one GAM, exhibiting both nonlinear and linear associations with abundance. Temperature was the most important predictor of abundance and was significant in GAMs for 11 species. Notably, pH was a significant predictor of abundance for six species: Arctic cod (Boreogadus saida), broad whitefish (Coregonus nasus), Dolly Varden (Salvelinus malma), ninespine stickleback (Pungitius pungitius), saffron cod (Eleginus gracilis), and whitespotted greenling (Hexagrammos stelleri). Broad whitefish and whitespotted greenling abundance was positively associated with pH, while Arctic cod and saffron cod abundance was negatively associated with pH. These results may be a bellwether for future nearshore Arctic fish community change by providing a foundational characterization of the relationships between abundance and the abiotic environment, particularly in regard to pH, and demonstrate the importance of including a wider range of physicochemical habitat covariates in future research.     

Ocean currents shape the microbiome of Arctic marine sediments

Prokaryote communities were investigated on the seasonally stratified Alaska Beaufort Shelf (ABS). Water and sediment directly underlying water with origin in the Arctic, Pacific or Atlantic oceans were analyzed by pyrosequencing and length heterogeneity-PCR in conjunction with physicochemical and geographic distance data to determine what features structure ABS microbiomes. Distinct bacterial communities were evident in all water masses. Alphaproteobacteria explained similarity in Arctic surface water and Pacific derived water. Deltaproteobacteria were abundant in Atlantic origin water and drove similarity among samples. Most archaeal sequences in water were related to unclassified marine Euryarchaeota. Sediment communities influenced by Pacific and Atlantic water were distinct from each other and pelagic communities. Firmicutes and Chloroflexi were abundant in sediment, although their distribution varied in Atlantic and Pacific influenced sites. Thermoprotei dominated archaea in Pacific influenced sediments and Methanomicrobia dominated in methane-containing Atlantic influenced sediments. Length heterogeneity-PCR data from this study were analyzed with data from methane-containing sediments in other regions. Pacific influenced ABS sediments clustered with Pacific sites from New Zealand and Chilean coastal margins. Atlantic influenced ABS sediments formed another distinct cluster. Density and salinity were significant structuring features on pelagic communities. Porosity co-varied with benthic community structure across sites and methane did not. This study indicates that the origin of water overlying sediments shapes benthic communities locally and globally and that hydrography exerts greater influence on microbial community structure than the availability of methane.