Distribution and physiology of ABC-type transporters contributing to multidrug resistance in bacteria.

Membrane proteins responsible for the active efflux of structurally and functionally unrelated drugs were first characterized in higher eukaryotes. To date, a vast number of transporters contributing to multidrug resistance (MDR transporters) have been reported for a large variety of organisms. Predictions about the functions of genes in the growing number of sequenced genomes indicate that MDR transporters are ubiquitous in nature. The majority of described MDR transporters in bacteria use ion motive force, while only a few systems have been shown to rely on ATP hydrolysis. However, recent reports on MDR proteins from gram-positive organisms, as well as genome analysis, indicate that the role of ABC-type MDR transporters in bacterial drug resistance might be underestimated. Detailed structural and mechanistic analyses of these proteins can help to understand their molecular mode of action and may eventually lead to the development of new strategies to counteract their actions, thereby increasing the effectiveness of drug-based therapies. This review focuses on recent advances in the analysis of ABC-type MDR transporters in bacteria.     

CD46 signaling in T cells: Linking pathogens with polarity

CD46 is a cell surface protein that regulates complement activity and is utilized as a receptor by numerous viral and bacterial pathogens that infect humans. CD46 is not just an entry site for pathogens, but can affect various cellular activities in response to pathogen binding that can have profound consequences for the host response to infection. The study of CD46 signaling in T cells has emerged as an exciting area of research that is shedding new light on how pathogens might manipulate the host immune response. This review will focus on our current understanding of CD46 signaling in T cell polarity and how this might influence disease outcome.     

An improved water content model for Periplaneta cuticle: Effects of epidermis removal and cuticle damage

All previously reported integumental permeabilities to water for Periplaneta at 20°C have been shown to be overestimates by at least an order of magnitude. Cuticle damage, apparently due to mechanical contact, is a common occurrence in cockroach cultures. Damage is increased by handling during experimental manipulation. Repair of the damage is readily observed in isolated individuals as cuticle permeability declines over a few days. Repaired cuticle permeability is not humidity dependent, but damage affecting a few per cent of the cuticle area, renders it so. Cuticle-water contents are slightly influenced by sex related size differences. Cuticle-water contents are unaffected by variations in ambient activity. Epidermal removal initiates a drop in cuticle-water content, apparently not involving active processes. Cuticle-water contents can be accurately predicted in any ambient vapour pressure using a two-layered model combining equilibrium water contents and component permeabilities. Incorporating a parallel unprotected endocuticle pathway into the model successfully simulates the observed humidity dependence of damaged permeabilities. Epidermal permeability cannot be less than 2× 10⁻⁵ cm.s⁻¹; 2000 times more permeable than the overlying cuticle.     

Ultrastructural study of the cuticle and epidermis in Pseudochordodes bedriagae

The light-microscopic and ultrastructural characteristics of Nematomorpha (Gordiacea) integument are described. Nine male Pseudochordodes bedriagae specimens were collected in the 1997 spring-summer period from the Sauce Chico stream in the Sierra de la Ventana, province of Buenos Aires, Argentina. Of these samples, two were analyzed using scanning electron microscopy (SEM) and the other two using transmission electron microscopy (TEM) in order to establish their morphological characteristics. The morphology of the three integumentary components (epidermis, cuticle and epicuticle) is described. Comparing our findings with those of previous studies, numerous similarities are pointed out. Some variants found would probably be related more to the various criteria of interpreting cut incidences and/or fractures than to actual differences. We assume that the different zones of the cuticle and epicuticle are segregated at the germinal stratum level by the epidermal cells, which would later undergo a slow process of maturation until their exocytosis at the level of the free epicuticular surface.     

dachsous and frizzled contribute separately to planar polarity in the Drosophila ventral epidermis

Cells that comprise tissues often need to coordinate cytoskeletal events to execute morphogenesis properly. For epithelial tissues, some of that coordination is accomplished by polarization of the cells within the plane of the epithelium. Two groups of genes--the Dachsous (Ds) and Frizzled (Fz) systems--play key roles in the establishment and maintenance of such polarity. There has been great progress in uncovering the how these genes work together to produce planar polarity, yet fundamental questions remain unanswered. Here, we study the Drosophila larval ventral epidermis to begin to address several of these questions. We show that ds and fz contribute independently to polarity and that they do so over spatially distinct domains. Furthermore, we find that the requirement for the Ds system changes as field size increases. Lastly, we find that Ds and its putative receptor Fat (Ft) are enriched in distinct patterns in the epithelium during embryonic development.     

Epithelial polarity: the ins and outs of the fly epidermis

Epithelial cells must polarize and establish apical and basolateral membrane domains during development. Recent experiments have shed light on how apical-basal polarity is generated during cellularization in Drosophila, when around 6000 epithelial cells are created synchronously from a syncytium.     

Linking epithelial-mesenchymal transition to the well-known polarity protein Par6

Epithelial-mesenchymal transition (EMT) is involved in the formation of the body plan, tissue remodeling, and cancer progression. Two recent reports in Science (Barrios-Rodiles et al., 2005; Ozdamar et al., 2005) have decisively advanced our understanding of EMT. Par6 was identified as a key player in the control of tight junction (TJ) stability. This new study provides further insight into the protein networks involved in topologically regulated control of epithelial cell polarity and plasticity.     

Planar polarity and actin dynamics in the epidermis of Drosophila

Dorsal closure is a morphogenetic process involving the coordinated convergence of two epithelial sheets to enclose the Drosophila melanogaster embryo. Specialized populations of cells at the edges of each epithelial sheet, the dorsal-most epidermal cells, emit actin-based processes that are essential for the proper enclosure of the embryo. Here we show that actin dynamics at the leading edge is preceded by a planar polarization of the dorsal-most epidermal cells associated with a reorganization of the cytoskeleton. An important consequence of this planar polarization is the formation of actin-nucleating centres at the leading edge, which are important in the dynamics of actin. We show that Wingless (Wg) signalling and Jun amino-terminal kinase (JNK) signalling have overlapping but different roles in these events.     

Insect epidermis: disturbance of supracellular tissue polarity does not prevent the expression of cell polarity

Summary The insect integument displays planar tissue polarity in the uniform orientation of polarized cuticular structures. In a body segment, for example, the denticles and bristles produced by the constituent epidermal cells point posteriorly. Colchicine can abolish this uniform orientation while still allowing individual cells to form orientated cuticular structures and thereby to express cell polarity. This suggests that an individual cell in a sheet can establish planar polarity without reference to some kind of covert supracellular cue (such as a morphogen gradient) in the epidermis as a whole. The results also indicate that colchicine interferes — directly or indirectly — with the mechanisms involved in aligning the polarity axes of individual cells into a common orientation, thereby generating supracellular or tissue polarity.     

Pupal cuticle formation by Manduca sexta epidermis in vitro: Patterns of ecdysone sensitivity

During the larval-pupal transformation, various regions of the epidermis of Manduca sexta larvae have previously been found to require different lengths of exposure to the prothoracic glands in order to form pupal cuticle. To distinguish between requirements for differing threshold concentrations of ecdysone and those for differing durations of exposure to ecdysone, wandering stage larval epidermis was cultured in Grace's medium. When most of the thick larval cuticle was removed, the epidermis responded to concentrations of β-ecdysone of 1.0 μ/ml or greater for 4 days by forming cysts which later formed tanned pupal cuticle. No fat body or protein supplement was required. When the larval integument was explanted intact, similar requirements for cuticle formation and for tanning were found. All regions of the fifth abdominal segment required similar concentrations of β-ecdysone (0.4–0.6 μg/ml) for 4 days for 50% to form pupal cuticle, but gin trap epidermis required the least exposure to a threshold concentration of ecdysone (1.5 days in 0.9 μg/ml). The anterior dorsal intersegmental region required about 0.5 day longer, followed by the posterior intersegmental and the dorsal intrasegmental regions. Thus, the duration of exposure seemed more important. About 1 day longer of exposure to ecdysone was required for subsequent tanning of the new cuticle than for cuticle formation, yet tanning of the cuticle did not occur with prolonged exposure to ecdysone.     

Cell polarity during wound healing in an insect epidermis

The insect integument displays uniform posterior orientation of cuticular denticles or bristles formed by the epidermal cells. We want to understand how cell polarities become uniformly oriented in the plane of the epidermal sheet. Here we test whether directed cell migration disturbs the orientation of denticles. Burning a circular area of epidermal cells beneath the cuticle causes cells to migrate into the resulting wound and the cuticle pattern observed after the subsequent moult depends on the time interval between burning and ecdysis. After a short wound-healing period cuticular protrusions tend to point away from the wound. With increasing would healing periods they tend to point more and more towards the wound centre. These results suggest that the migrating cells tend to orient cuticular protrusions in the direction of cell movement while continued cell movement will bend nascent cuticular protrusions outwards. Cell shape may also determine denticle orientation. I propose that the asymmetric localization of cell components known to determine the orientation of cell migration may also determine denticle orientation in insect epidermal cells.     

Cell interactions and planar polarity in the abdominal epidermis of Drosophila

The integument of the Drosophila adult abdomen bears oriented hairs and bristles that indicate the planar polarity of the epidermal cells. We study four polarity genes, frizzled (fz), prickle (pk), Van gogh/strabismus (Vang/stbm) and starry night/flamingo (stan/fmi), and note what happens when these genes are either removed or overexpressed in clones of cells. The edges of the clones are interfaces between cells that carry different amounts of gene products, interfaces that can cause reversals of planar polarity in the clone and wild-type cells outside them. To explain, we present a model that builds on our earlier picture of a gradient of X, the vector of which specifies planar polarity and depends on two cadherin proteins, Dachsous and Fat. We conjecture that the X gradient is read out, cell by cell, as a scalar value of Fz activity, and that Pk acts in this process, possibly to determine the sign of the Fz activity gradient. We discuss evidence that cells can compare their scalar readout of the level of X with that of their neighbours and can set their own readout towards an average of those. This averaging, when it occurs near the edges of clones, changes the scalar response of cells inside and outside the clones, leading to new vectors that change polarity. The results argue that Stan must be present in both cells being compared and acts as a conduit between them for the transfer of information. And also that Vang assists in the receipt of this information. The comparison between neighbours is crucial, because it gives the vector that orients hairs--these point towards the neighbour cell that has the lowest level of Fz activity. Recently, it has been shown that, for a limited period shortly before hair outgrowth in the wing, the four proteins we study, as well as others, become asymmetrically localised in the cell membrane, and this process is thought to be instrumental in the acquisition of cell polarity. However, some results do not fit with this view--we suggest that these localisations may be more a consequence than a cause of planar polarity.     

PIGOK: Linking protein identity to gene ontology and function

Here we introduce a computer database that allows for the rapid retrieval of physicochemical properties, Gene Ontology, and Kyoto Encyclopedia of Genes and Genomes information about a protein or a list of proteins. We applied PIGOK analyzing Schizosaccharomyces pombe proteins displaying differential expression under oxidative stress and identified their biological functions and pathways. The database is available on the Internet at http://pc4-133.ludwig.ucl.ac.uk/pigok.html.     

Linking nuclear mRNP assembly and cytoplasmic destiny

From the very beginning, mRNAs have a complex existence. They are transcribed, capped, spliced, modified at the 3'end, exported from the nucleus, translated, and eventually degraded. These many events not only affect the overall survival and properties of an mRNA, but are also carefully co-ordinated and integrated with quality control mechanisms that function to ensure that only 'proper' mRNAs are translated at the correct developmental time and place. This does not mean that all mRNAs follow a single or uniform path from synthesis to death. Instead, there are diverse means by which the activities of specific mRNAs are regulated, and these controls often depend upon multiple events in the mRNA's life. mRNAs are not found naked in the cell, instead they are part of complex RNPs (ribonucleoproteins) that consist of many factors. These RNPs are highly dynamic structures that change during the lifetime of a given RNA; linking events such as synthesis and processing to the final fate of the mRNA. Here, we will discuss what is known of the assembly of RNPs in general, with specific reference to the myriad of connections between different nuclear events and the cytoplasmic activity of an mRNA. Due to space limitations this review is not comprehensive, instead we focus on specific examples to illustrate these emerging themes in gene expression.     

Studies on Pogonophora. 4. Fine structure of the cuticle and epidermis

The fine structure of the integument in several species of Pogonophora has been examined by electron microscopy. The cuticle over the main body is composed of several layers of orthogonally arranged fibres embedded in an amorphous matrix. It is regularly traversed by microvilli from underlying epidermal cells. Toothed bristles of the annuli and setae of the anchor are composed of closely packed fibrous cylinders wrapped in a cortical material. In fine structure the cuticle, setae, toothed bristles (or setae) and setal sacs forming the setae closely resemble the corresponding structures in annelids. The cuticle is maximally thick over the forepart (protosome + mesosome) ; it is very thin and non-fibrous over the surface of the metameric papillae and over extensive areas of post-metameric trunk. The possibilities of a collagenous nature of the cuticle fibres and their mode of secretion by the epidermal cells are discussed. The organization of various cell-types forming the epidermis over the entire animal is examined. Possible functions of these cell-types are discussed. Notable amongst these are 'possible zymogen cells' and some absorptive cells. The intriguing question of nutrition in these gut-less tubiculous animals is re-examined in the light of present observations.     

Insights into COPI coat assembly and function in living cells

Eukaryotic cells use an elaborate machinery involving the COPI coat complex to control protein trafficking in the secretory pathway. Although individual components of this complex are well known and their roles in deforming lipid membranes into coated carriers are well described, the precise sequence of molecular events by which these components assemble into and release from the COPI coat lattice remains unclear. Here, we present images and movies characterizing the dynamics of protein components of the COPI coat in living cells. We discuss the self-assembly of these coat components into a molecular machine for sorting and trafficking membranes.     

Diversity and potential correlations to the function of Collembola cuticle structures

Collembola (springtails) are soil arthropods, representing the most widespread hexapod group worldwide. Being skin-breathing animals, Collembola evolved special cuticular patterns, which are robust and antiadhesive allowing cuticular respiration under humid conditions in the soil environment. Details about function and formation of these unique cuticle characters are still unknown. Here we demonstrate that a high diversity of cuticular structures exists and that the different observed structural patterns of Collembola cuticles might go along with specific adaptations to life in soil. We examined the cuticle structures of 40 different species using scanning electron microscopy and compared the cuticle patterns of the different species with information about their preferred habitat. In addition, we compare the results with current systematic concepts, showing that certain cuticle structures are typical for different collembolan groups.