An Analysis of Regional Constraints on Exchange in DROSOPHILA MELANOGASTER Using Recombination-Defective Meiotic Mutants

The frequency of crossing over per unit of physical distance varies systematically along the chromosomes of Drosophila melanogaster . The regional distribution of crossovers in a series of X chromosomes of the same genetic constitution, but having different sequences, was compared in the presence and absence of normal genetically mediated regional constraints on exchange. Recombination was examined in Drosophila melanogaster females homozygous for either normal sequence X chromosomes or any of a series of X chromosome inversions. Autosomally, these females were either (1) wild type, (2) homozygous for one of several recombination-defective meiotic mutations that attenuate the normal regional constraints on exchange or (3) heterozygous for the multiply inverted chromosome TM2. The results show that the centromere, the telomeres, the heterochromatin and the euchromatic-heterochromatic junction do not serve as elements that respond to genic determinants of the regional distribution of exchanges. Instead, the results suggest that there are several elements sparsely distributed in the X chromosome euchromatin. Together with the controlling system affected by recombination-defective meiotic mutations, these elements specify the regional distribution of exchanges. The results also demonstrate that the alteration in the distribution of crossovers caused by inversion heterozygosity (the interchromosomal effect) results from the response of a normal controlling system to an overall increase in the frequency of crossing over, rather than from a disruption of the system of regional constraints on exchange that is disrupted by meiotic mutations. The mechanisms by which regional constraints on exchange might be established are discussed, as is the possible evolutionary significance of this system.     

The genetics and cytology of a mutator factor in Drosophila melanogaster

A Drosophila melanogaster mutator factor is described whose effects include the induction of unique chromosomal aberrations and male crossing over. Results of experiments to map the factor suggest that genetic transmission is somehow chromosomally associated but not localizable to the X, Y, second or third chromosome. There appears to be a good correlation between the distributions of male crossover exchange points and unique aberration breakpoints for the second chromosome but not for the third chromosome. The male crossovers, which occur more frequently in the centromeric region, occur in euchromatin rather than in the centric heterochromatin. The male crossovers tend to be rather precise reciprocal exchanges, since cytologically detectable deletions and duplications are only infrequently produced. It is suggested that the present mutator may be identical to earlier reported mutators of D. melanogaster.     

The Relationship between Chiasmata and Crossing over in TRITICUM AESTIVUM

Telocentrics for the β arm of chromosome 4A and the long arm of 6B were used as cytological markers for the determination of chiasma frequency. In concomitant studies of recombination, terminal segments of rye and T. umbellulatum chromatin carrying Hp (Hairy peduncle) and Lr9 (Leaf-rust resistance), respectively, marked 4A and 6B. Two temperatures, 21° and 32°, were used for both the 4A and 6B experiments.—Only one chiasma was observed in each heteromorphic bivalent. Because there was a substantial reduction in pairing between diakinesis and metaphase I, all determinations of chiasma frequency were made at diakinesis. In the 21° experiments, agreement was good between genetic recombination and cytological prediction on the basis of the partial chiasmatypy hypothesis that each chiasma represents a crossover. At 32° both chiasma frequency and crossing over, but particularly the latter, were strongly reduced. The fewer crossovers than expected are explained in part by stickiness of chromosomes at the high temperature, sometimes resulting in adjacent chromosomes being wrongly scored as having a chiasma, and in part by premetaphase disjunction of some recombined bivalents and subsequent independent behavior of the two resulting univalents.—Male transmission of the 4A telocentric from the heteromorphic bivalent was unusually high: 51% at 21° and 31% at 32°.     

Relations between Factors Controlling Crossing over and Mutability in Males of DROSOPHILA ANANASSAE

Several stocks, selected because they carried previously identified factors governing either crossing over in males or mutability, were examined to determine whether the effects of these factors are restricted to one or the other process. Neither of two dominant enhancers of male crossing over had detectable effects on Minute mutation frequencies among progenies of assayed F₁ males. Genetically equivalent F₁ males monitored for crossing over showed no unequivocal effect of either of three mutators (two dominant and one extrachromosomal) or of a suppressor of mutability. However, one combination of a dominant crossover enhancer with a dominant mutator showed synergistic increases in both crossover and Minute frequencies, and the possibility exists that a single extrachromosomally transmitted element suppresses both male crossing over and mutability. This suppressor element (or elements) had been previously diagnosed in the pc stock which, in this study, was discovered to have also a dominant enhancer of male crossing over and a dominant mutator occupying separable loci in the third chromosome. The pc enhancer of male crossing over differs from the dominant enhancer in another stock with respect to the regional distribution of crossovers, and the pc mutator is distinguished from another 3-linked mutator by its preferential induction of mutations at the Delta locus.     

Fine-Scale Heterogeneity in Crossover Rate in the garnet-scalloped Region of the Drosophila melanogaster X Chromosome

Homologous recombination affects myriad aspects of genome evolution, from standing levels of nucleotide diversity to the efficacy of natural selection. Rates of crossing over show marked variability at all scales surveyed, including species-, population-, and individual-level differences. Even within genomes, crossovers are nonrandomly distributed in a wide diversity of taxa. Although intra- and intergenomic heterogeneities in crossover distribution have been documented in Drosophila, the scale and degree of crossover rate heterogeneity remain unclear. In addition, the genetic features mediating this heterogeneity are unknown. Here we quantify fine-scale heterogeneity in crossover distribution in a 2.1-Mb region of the Drosophila melanogaster X chromosome by localizing crossover breakpoints in 2500 individuals, each containing a single crossover in this specific X chromosome region. We show 90-fold variation in rates of crossing over at a 5-kb scale, place this variation in the context of several aspects of genome evolution, and identify several genetic features associated with crossover rates. Our results shed new light on the scale and magnitude of crossover rate heterogeneity in D. melanogaster and highlight potential features mediating this heterogeneity.     

Mutant Rec-1 Eliminates the Meiotic Pattern of Crossing over in Caenorhabditis Elegans

Meiotic crossovers are not randomly distributed along the chromosome. In Caenorhabditis elegans the central portions of the autosomes have relatively few crossovers compared to the flanking regions. We have measured the frequency of crossing over for several intervals across chromosome I in strains mutant for rec-1. The chromosome is ~50 map units in both wild-type and rec-1 homozygotes, however, the distribution of exchanges is very different in rec-1. Map distances expand across the gene cluster and contract near the right end of the chromosome, resulting in a genetic map more consistent with the physical map. Mutations in two other genes, him-6 and him-14, also disrupted the distribution of exchanges. Unlike rec-1, individuals homozygous for him-6 and him-14 had an overall reduction in the amount of crossing over accompanied by a high frequency of nondisjunction and reduced egg hatching. In rec-1; him-6 and rec-1; him-14 homozygotes the frequency of crossing over was characteristic of the Him mutant phenotype, whereas the distribution of the reduced number of exchanges was characteristic of the Rec-1 pattern. It appears that these gene products play a role in establishing the meiotic pattern of exchange events.     

mus(3)312D1, a mutagen sensitive mutant with profound effects on female meiosis in Drosophila melanogaster

The third chromosome, mutagen sensitive mutant mus(3)312^D1 impairs the meiotic process in females by increasing the frequency of first division nondisjunction and decreasing the frequency of meiotic crossing over. These genetic properties connote 312 to be defective in DNA replication and/or repair intimately associated with the crossing over exchange process. The mutant maps to the left arm of chromosome III between ru and h, and represents a new genetic site for a meiotic mutant. It is a pleasure and honor to dedicate this paper to my longtime younger friend and collaborator Wolfgang Beermann, cytologist par excellence, on the occasion of his 60th birthday     

On Spo16 and the Coefficient of Coincidence

spo16 mutants in yeast were reported to have reduced map lengths, a high frequency of nondisjunction in the first meiotic division, and essentially unchanged coefficients of coincidence. Were all crossing over in yeast subject to interference, such data would suggest that the “designation” of recombination events to become crossovers is separable from the “implementation” of that crossing over. In the presence of coexisting interference and noninterference phases of crossing over, however, lack of change in the coefficient of coincidence may show only that spo16 reduces crossing over in the two phases by a similar factor.     

RETRACTED ARTICLE: The effect of the <Emphasis Type="Italic">mus309</Emphasis> mutation,defective in DNA double-strand break repair,on crossing over in <Emphasis Type="Italic">Drosophila melanogaster</Emphasis> suggests a mechanism for the centromere effect of crossing over

The mus309 gene in Drosophila melanogaster encodes a RecQ helicase which is involved in DNA double-strand break (DSB) repair. In a brood pattern analysis, it was observed that in mus309 mutant females, the frequency of single crossovers in the central cv–v interval of the X chromosome was reduced in young females but returned to the level of the wild type control as the females aged. In the proximal v–f interval, the frequency of single crossovers was increased during the entire experimental period. In particular, it was observed that the frequency of double crossovers, as well as the coefficient of coincidence first increased but then gradually decreased, finally reaching the level of the control flies, as the females aged. Map distances increased due to the mus309 mutation in both gene interval studies, but they did not change as the females aged, a result suggesting that the mus309 gene controls the distribution of DSBs to be repaired as crossovers instead of non-crossovers. The results suggest a mechanism for the centromere effect of crossing over in Drosophila, viz the fact the frequency of meiotic crossing over reduces with the age of the female, and that the reduction is more pronounced the closer the interval is to the proximal heterochromatin of the chromosome arm. According to the model suggested, the centromere effect is simply a matter of the balance between different pathways of the repair of the DSBs of DNA.     

The road to crossovers: plants have their say

Crossovers involve the reciprocal exchange of large fragments of genetic material between homologous chromosomes during meiosis. In this way, crossovers are the basis of genetics. Remarkably, the number and distribution of crossovers on chromosomes are closely controlled. Data from various model organisms (notably Saccharomyces cerevisiae) show that the distribution of crossovers results from a series of tightly regulated events involving the formation and repair of double-strand breaks and interference. Recent advances in genetic and cytological tools, particularly for studying Arabidopsis thaliana, have enabled crossover control in plants to be studied in more detail. In this article, we discuss the contribution of plant studies to meiosis research, particularly to our understanding of crossover control and interference, and we evaluate models of interference.     

REC, Drosophila MCM8, drives formation of meiotic crossovers

Crossovers ensure the accurate segregation of homologous chromosomes from one another during meiosis. Here, we describe the identity and function of the Drosophila melanogaster gene recombination defective (rec), which is required for most meiotic crossing over. We show that rec encodes a member of the mini-chromosome maintenance (MCM) protein family. Six MCM proteins (MCM2–7) are essential for DNA replication and are found in all eukaryotes. REC is the Drosophila ortholog of the recently identified seventh member of this family, MCM8. Our phylogenetic analysis reveals the existence of yet another family member, MCM9, and shows that MCM8 and MCM9 arose early in eukaryotic evolution, though one or both have been lost in multiple eukaryotic lineages. Drosophila has lost MCM9 but retained MCM8, represented by REC. We used genetic and molecular methods to study the function of REC in meiotic recombination. Epistasis experiments suggest that REC acts after the Rad51 ortholog SPN-A but before the endonuclease MEI-9. Although crossovers are reduced by 95% in rec mutants, the frequency of noncrossover gene conversion is significantly increased. Interestingly, gene conversion tracts in rec mutants are about half the length of tracts in wild-type flies. To account for these phenotypes, we propose that REC facilitates repair synthesis during meiotic recombination. In the absence of REC, synthesis does not proceed far enough to allow formation of an intermediate that can give rise to crossovers, and recombination proceeds via synthesis-dependent strand annealing to generate only noncrossover products.     

A Fine-Structure Map of Spontaneous Mitotic Crossovers in the Yeast Saccharomyces cerevisiae

Homologous recombination is an important mechanism for the repair of DNA damage in mitotically dividing cells. Mitotic crossovers between homologues with heterozygous alleles can produce two homozygous daughter cells (loss of heterozygosity), whereas crossovers between repeated genes on non-homologous chromosomes can result in translocations. Using a genetic system that allows selection of daughter cells that contain the reciprocal products of mitotic crossing over, we mapped crossovers and gene conversion events at a resolution of about 4 kb in a 120-kb region of chromosome V of Saccharomyces cerevisiae. The gene conversion tracts associated with mitotic crossovers are much longer (averaging about 12 kb) than the conversion tracts associated with meiotic recombination and are non-randomly distributed along the chromosome. In addition, about 40% of the conversion events have patterns of marker segregation that are most simply explained as reflecting the repair of a chromosome that was broken in G1 of the cell cycle.     

Somatic Crossing over in GLYCINE MAX (L.) Merrill: Effect of Some Inhibitors of DNA Synthesis on the Induction of Somatic Crossing over and Point Mutations

Glycine max (soybean) is the only known higher plant with a definitely established occurrence of somatic crossing over. This material lends itself to the analysis of somatic crossing over, gross chromosomal aberrations and mutations, all of which may be induced by the same treatment of the mutagen given to seeds. This is made possible because gene Y₁₁ for chlorophyll development in the variety L65-1237 is incompletely dominant over its allele y₁₁, so that twin or double spots composed of a dark green (Y₁₁Y₁₁) and a yellow (y₁₁y₁₁) component can be observed adjacent to and as mirror images of each other on the light green Y₁₁y₁₁ leaves in the areas of complementary exchange for these genes. Lack of growth of either component of this double spot as well as several types of chromosomal disturbances give rise to single spots resembling phenotypes of y₁₁y₁₁ or Y₁₁Y₁₁ leaves. Point mutations can be studied by looking for green sectors originating from Y₁₁y₁₁ genotype on the y₁₁y₁₁ plants. Seeds obtained from heterozygous plants were treated with caffeine, cytosine arabinoside, actinomycin D and 5-fluoro-deoxyuridine, all known inhibitors of DNA synthesis, and puromycin, an inhibitor of synthesis of proteins. The treatments with caffeine and actinomycin D increased the frequency of somatic crossing over as measured by the frequency of double spots on Y₁₁y₁₁ leaves, but cytosine arabinoside, 5-fluorodeoxyuridine and puromycin did not. Thus somatic crossing over was induced only by those chemicals which are known to allow rejoining of chromosomes, thereby suggesting a correlation between the two phenomena. These observations indicate that it is not the mere inhibition of DNA synthesis, but some rather more specific event in DNA repair which is responsible for complementary exchanges. Some of these results differ from studies carried out with fungi. The main effect of all chemicals tested, except caffeine and actinomycin D, was inferred to be the production of deletions in Y₁₁y₁₁ plants which raised the frequency of single (dark green or yellow) spots relative to the doubles. Caffeine was the only chemical which constantly increased the frequency of specific point mutations. In the control material, the great majority of spots are found on the upper surface of the leaf. This picture could not be changed in any of the treated materials, thus indicating uniform resistance of spongy mesophyll tissue to the mutagens applied.     

Cytogenetic,cross-mating and molecular evidence of four cytological races of Anopheles crawfordi (Diptera: Culicidae) in Thailand and Cambodia

Twenty-nine isolines of Anopheles crawfordi were established from wild-caught females collected from cow-baited traps in Thailand and Cambodia. Three types of X (X₁, X₂, X₃) and four types of Y (Y₁, Y₂, Y₃, and Y₄) chromosomes were identified, according to differing amounts of extra heterochromatin. These sex chromosomes represent four metaphase karyotypes, i.e., Forms A (X₁, X₂, X₃, Y₁), B (X₁, X₂, X₃, Y₂), C (X₂, Y₃) and D (X₂, Y₄). Forms C and D are novel metaphase karyotypes confined to Thailand, whereas forms A and B appear to be common in both Thailand and Cambodia. Cross-mating experiments between the four karyotypic forms indicated genetic compatibility in yielding viable progenies and synaptic salivary gland polytene chromosomes. The results suggest that the forms are conspecific and A. crawfordi comprises four cytological races, which is further supported by very low intraspecific variation (mean genetic distance = 0.000–0.018) of the nucleotide sequences in ribosomal DNA (ITS2) and mitochondrial DNA sequences (COI, COII).     

Incipient Genome Differentiation in Gossypium. I. Chromosomes 14, 15, 16, 19 and 20 Assessed in G. HIRSUTUM, G. RAIMONDII and G. LOBATUM by Means of Seven a-D Translocations

The genus Gossypium is favorable for study of genome divergence at several levels. Early stages of divergence have been studied among four D genomes by comparing chiasma frequencies (reciprocal exchanges) between pairs of genomes and between individual counterpart chromosomes marked by heterozygous translocations. D₅ (G. raimondii) shows barely detectable differentiation from from D_h (G. hirsutum), whereas D₇ (G. lobatum) is considerably less closely related to D_h than is D₅. Fragmentary data suggest that D_2–2 (G. harknessii) falls between D₅ and D₇ in its relationship to D_h. Since chiasma frequencies in individual chromosomes and marked regions exhibit the same order of relationships as their corresponding whole genomes, it is concluded that the genome differentiation is generalized (i.e., nucleus-wide) rather than localized in specific chromosomes or chromosome regions. Estimates of relationships based on reciprocal exchange frequencies agree with those based upon preferential synapsis in allohexaploids reported previously. Since preferential synapsis and reciprocal exchange frequencies reveal the same order of relationships, it is concluded that to some extent they reflect common underlying changes in chromosome properties, despite recent evidence that synapsis and crossing over are under independent genetic control.     

A physical assay for meiotic recombination in Coprinus cinereus

We have used the polymerase chain reaction (PCR) method to monitor meiotic recombination in the basidiomycete Coprinus cinereus. We used DNA-mediated transformation to recover strains with modifications of the trp1 locus. The modifications were designed to introduce unique PCR priming sites separated by a homologous 2.4?kb region in which crossing over could occur. We showed that exchange occurred in this region at the frequency expected for a typical region of this genome (2.4?kb should correspond to a genetic length of 0.08?cM). We also detected products resulting from crossing over in DNAs extracted from cells in meiotic prophase. The assay should be useful for monitoring exchange in mutants that cannot complete meiosis.     

Leagues of their own: sexually dimorphic features of meiotic prophase I

Meiosis is a conserved cell division process that is used by sexually reproducing organisms to generate haploid gametes. Males and females produce different end products of meiosis: eggs (females) and sperm (males). In addition, these unique end products demonstrate sex-specific differences that occur throughout meiosis to produce the final genetic material that is packaged into distinct gametes with unique extracellular morphologies and nuclear sizes. These sexually dimorphic features of meiosis include the meiotic chromosome architecture, in which both the lengths of the chromosomes and the requirement for specific meiotic axis proteins being different between the sexes. Moreover, these changes likely cause sex-specific changes in the recombination landscape with the sex that has the longer chromosomes usually obtaining more crossovers. Additionally, epigenetic regulation of meiosis may contribute to sexually dimorphic recombination landscapes. Here we explore the sexually dimorphic features of both the chromosome axis and crossing over for each stage of meiotic prophase I in Mus musculus, Caenorhabditis elegans, and Arabidopsis thaliana. Furthermore, we consider how sex-specific changes in the meiotic chromosome axes and the epigenetic landscape may function together to regulate crossing over in each sex, indicating that the mechanisms controlling crossing over may be different in oogenesis and spermatogenesis.

     

The effects of tandem duplications on crossing over inDrosophila melanogaster

Each of three tandem duplications,Bar, Beadex ^r49k andDp(I)z-w, when homozygous increases crossing over in their environs in excess of the genetic length of the duplication.Detailed crossing over studies withDp(I)z-w showed that in the duplication homozygotes interference is reduced and when combined with heterologous autosomal inversions, double crossovers occurring in less than 10 map units are readily recovered.These results are interpreted in terms of the concept of effective pairing and suggest that tandem duplications increase crossing over by increasing effective pairing.     

Recombination and spontaneous mutation at the major cluster of resistance genes in lettuce (Lactuca sativa)

Two sets of overlapping experiments were conducted to examine recombination and spontaneous mutation events within clusters of resistance genes in lettuce. Multiple generations were screened for recombinants using PCR-based markers flanking Dm3. The Dm3 region is not highly recombinagenic, exhibiting a recombination frequency 18-fold lower than the genome average. Recombinants were identified only rarely within the cluster of Dm3 homologs and no crossovers within genes were detected. Three populations were screened for spontaneous mutations in downy mildew resistance. Sixteen Dm mutants were identified corresponding to spontaneous mutation rates of 10(-3) to 10(-4) per generation for Dm1, Dm3, and Dm7. All mutants carried single locus, recessive mutations at the corresponding Dm locus. Eleven of the 12 Dm3 mutations were associated with large chromosome deletions. When recombination could be analyzed, deletion events were associated with exchange of flanking markers, consistent with unequal crossing over; however, although the number of Dm3 paralogs was changed, no novel chimeric genes were detected. One mutant was the result of a gene conversion event between Dm3 and a closely related homolog, generating a novel chimeric gene. In two families, spontaneous deletions were correlated with elevated levels of recombination. Therefore, the short-term evolution of the major cluster of resistance genes in lettuce involves several genetic mechanisms including unequal crossing over and gene conversion.     

Chiasmata and chromosome breakages are related to crossing over in Drosophila ananassae males.

A cytogenetic analysis of male crossing over in Drosophila ananassae revealed that cytological exchanges resulted in genetic crossing over, and that chiasma frequency and the genetic recombination correlated positively in chromosomes 2 and 3. Furthermore, the frequency of chromosome breakages correlated positively with chiasma frequency. Paracentric inversion heterozygosity had no detectable influence on the chromosome pairing or exchange events within the inversion loop at meiosis. Scoring of the chiasma demonstrated that males homozygous for the previously mapped enhancers of male crossing over had low frequencies of chiasmata, whereas higher frequencies of chiasmata were observed in males heterozygous for enhancers. The results presented here indicate that the genetic factors controlling male crossing over are involved in the origin of chromosome breakages and in exchange events.