Electrophysiological Mechanisms of Adaptation Processes

A systemic analysis of the relationships between electrophysiological parameters of the cardiovascular and respiratory systems during adaptation processes has been performed in order to study some electrophysiological mechanisms of stress. Studies were performed in subjects with various circulatory disorders and in healthy subjects at rest and during exercise; in skilled and apprentice workers at an electronics plant; and in students under examination stress. It is demonstrated that determining the set of parameters of the integrated cardiac–respiratory–hemodynamic system is necessary but not sufficient for diagnosing stress and its individual stages. The main characteristic is the degree of harmony in the ratios between these parameters, i.e., the balance of relationships between subsystems; the ratios thereby serve as new diagnostic signs of the functional state of the body. A resonance–wave model of stress is proposed. This model forms a basis for the assessment of stress during its development, with the stages of strain and overstrain being regarded as stages of the positive dynamics of adaptation syndrome provided that self-regulation is preserved during the progress of these stages, i.e., resonance is formed. In the case of disharmonic ratios between electrophysiological parameters and imbalance of their relationships, the stages of adaptation processes differ in the degree of deviation from invariant ratios between parameters.     

Integrative Modeling of Small Artery Structure and Function Uncovers Critical Parameters for Diameter Regulation

Organ perfusion is regulated by vasoactivity and structural adaptation of small arteries and arterioles. These resistance vessels are sensitive to pressure, flow and a range of vasoactive stimuli. Several strongly interacting control loops exist. As an example, the myogenic response to a change of pressure influences the endothelial shear stress, thereby altering the contribution of shear-dependent dilation to the vascular tone. In addition, acute responses change the stimulus for structural adaptation and vice versa. Such control loops are able to maintain resistance vessels in a functional and stable state, characterized by regulated wall stress, shear stress, matched active and passive biomechanics and presence of vascular reserve. In this modeling study, four adaptation processes are identified that together with biomechanical properties effectuate such integrated regulation: control of tone, smooth muscle cell length adaptation, eutrophic matrix rearrangement and trophic responses. Their combined action maintains arteries in their optimal state, ready to cope with new challenges, allowing continuous long-term vasoregulation. The exclusion of any of these processes results in a poorly regulated state and in some cases instability of vascular structure.     

Model of geometrical and smooth muscle tone adaptation of carotid artery subject to step change in pressure

Recent experimental studies have shown significant alterations of the vascular smooth muscle (VSM) tone when an artery is subjected to an elevation in pressure. Therefore, the VSM participates in the adaptation process not only by means of its synthetic activity (fibronectins and collagen) or proliferative activity (hypertrophy and hyperplasia) but also by adjusting its contractile properties and its tone level. In previous theoretical models describing the time evolution of the arterial wall adaptation in response to induced hypertension, the contribution of VSM tone has been neglected. In this study, we propose a new biomechanical model for the wall adaptation to induced hypertension, including changes in VSM tone. On the basis of Hill's model, total circumferential stress is separated into its passive and active components, the active part being the stress developed by the VSM. Adaptation rate equations describe the geometrical adaptation (wall thickening) and the adaptation of active stress (VSM tone). The evolution curves that are derived from the theoretical model fit well the experimental data describing the adaptation of the rat common carotid subjected to a step increase in pressure. This leads to the identification of the model parameters and time constants by characterizing the rapidity of the adaptation processes. The agreement between the results of this simple theoretical model and the experimental data suggests that the theoretical approach used here may appropriately account for the biomechanics underlying the arterial wall adaptation.     

Prospects of medical monitoring of long-duration space flights by means of non-contact recording of physiological functions during sleep time

The methods used to investigate the body functional state in sleep under the conditions of a long-duration space flight are of great scientific and practical interest. The Sonocard experiment is based on the method of seismocardiography. The goal of this experiment is to validate and improve the procedure of non-contact recording the in-sleep physiological data for monitoring the crew state. The very first results have demonstrated that, as on Earth, sleep is crucial for recovery of the functional reserves expended during the daytime under the conditions of microgravity. Using the new technology, the recovery processes, as well as individual adaptation to a long-term space flight, can be studied. This method makes it possible to evaluate the sleep quality, mechanisms of recreation, and body functionality. These data may enrich substantially the information used by medical operators of space missions in the control centers.     

Electroencephalogram and event-related potentials in the selective attention paradigm as related to the levels of some metabolites in the prefrontal cortex

The results of preliminary analysis at the first stage of the study have demonstrated significant relationships between electrophysiological parameters and the levels of a number of metabolites (measured by proton magnetic resonance spectroscopy) in the dorsolateral prefrontal cortex of the left cerebral hemisphere. The observed relationships are assumed to be mediated by individual-specific characteristics of activation of this cerebral region and its contribution to information processing. The neurophysiological markers of the weakened functional state of the brain are associated with decreased levels of N-acetyl aspartate and choline-containing compounds and an increased level of creatin/phosphocreatin in the tested area of the left prefrontal cortex.     

Light stress provokes plastic and elastic modifications in structure and function of photosystem II in camellia leaves

Adaptation of plants to a continuously changing environment may be approached in terms of an optimisation strategy that is dictated by the thermodynamic demand for minimal entropy production. Any change in environmental input is a stressor in the sense that it disturbs optimality. Stress is defined by this disturbance and is therefore relative, with non-stress serving as the reference condition. Because of the thermodynamic demand for optimality, suboptimality forces the system to undergo a state change to a new optimal state. These state changes bring about the adaptation of the system. Any physical or chemical change that occurs during the adaptation processes is denoted as strain. In the present study, the polyphasic rise in chlorophyll (Chl) a fluorescence (OJIP) is used to investigate the behaviour of photosystem II in camellia leaves under different physiological steady states established by adaptation to different light regimes at both room temperature and 10°C. Analysis of the fast fluorescence rise according to the JIP-test allows establishment of structural and functional parameters, providing a quantification of the system's behaviour. The calculated functional parameters are the specific (per reaction center, RC) and phenomenological (per cross section of the sample, CS) energy fluxes for absorption (ABS), trapping (TR) and electron transport (ET). The flux ratios or the yields (the maximum quantum yield of primary photochemistry, φ_p0, the efficiency with which a trapped exciton can move an electron into the electron transport chain, ψ₀, or the probability that an absorbed photon will move an electron into the electron transport chain, ψ_E0 are structural parameters provided by this test, as well as an expression of the concentration of the reaction centers (RC/CS). The photochemical (k_p) and nonphotochemical (k_N) de-excitation rate constants are also calculated. The present study focuses mainly on the response of photosystem II to cyclic environmental changes, denoted as the residual strain. The study investigates the adaptive processes in relation to the regulation of the different functional and structural parameters, as well as reversibility (elasticity) and irreversibility (plasticity). Having screened camellia leaves for several environmental changes, we observed that the various structural parameters undergo modification that differ in both their extent and degree of elasticity, which indicates that different survival strategies are employed in response to stress.     

EEG spatial organization during intense hyperventilation (cyclic breathing): II. EEG correlates of psychovisceral phenomena

EEG correlates of two main effects of long-term hyperventilation (cyclic breathing similar to rebirthing), namely, psychotic manifestations and sensations in internal organs, are considered. Standard EEGs of 44 subjects were recorded and subsequently treated by multiparametric methods. It was shown that, in the case of psychotic phenomena (hallucinations, visual and auditory images, different scenes, virtual travels, out-of-body experiences, etc.), the changes in the spatial organization of bioelectric potentials as compared with the baseline have different patterns than in the case of sensations in internal organs. The changes are observed in the frontal regions of the cortex: a decrease in spatial synchronization (linear processes) during an increase in spatial disarray (nonlinear processes) of bioelectric potentials and the intensifying of high-frequency β activity. If sensations in internal organs appear, a decrease in the above parameters was observed in the right hemisphere and in posterior cortical areas. The data are discussed from the viewpoint of qualitative specificity of changes in functional states during an altered state of consciousness with manifestations of different psychovisceral phenomena.     

Seven-day dry immersion: Interrelationship between the changes in the water-electrolyte balance and cardiovascular responses

The results of an experiment with a seven-day dry immersion are presented. Eight healthy men were examined before, during, and after the exposure. It was shown that the primary response involved hemodynamic and water-electrolyte changes. The mechanisms of cardiovascular adaptation to the immersion conditions were revealed. In particular, some electrophysiological shifts in the propagation of myocardial excitation were found, leading to an increase in the variance of natural small oscillations of the electric potential of the heart. The revealed significant reduction of the functional reserves of the cardiovascular regulatory mechanisms during adaptation to dry immersion is of great practical importance. The results suggest that the water-electrolyte balance shifts induced by dry immersion are the basis and the first phase of further changes in the autonomic regulation and functional state of the myocardium.     

Augmenting Epidemiological Models with Point-Of-Care Diagnostics Data

Although adoption of newer Point-of-Care (POC) diagnostics is increasing, there is a significant challenge using POC diagnostics data to improve epidemiological models. In this work, we propose a method to process zip-code level POC datasets and apply these processed data to calibrate an epidemiological model. We specifically develop a calibration algorithm using simulated annealing and calibrate a parsimonious equation-based model of modified Susceptible-Infected-Recovered (SIR) dynamics. The results show that parsimonious models are remarkably effective in predicting the dynamics observed in the number of infected patients and our calibration algorithm is sufficiently capable of predicting peak loads observed in POC diagnostics data while staying within reasonable and empirical parameter ranges reported in the literature. Additionally, we explore the future use of the calibrated values by testing the correlation between peak load and population density from Census data. Our results show that linearity assumptions for the relationships among various factors can be misleading, therefore further data sources and analysis are needed to identify relationships between additional parameters and existing calibrated ones. Calibration approaches such as ours can determine the values of newly added parameters along with existing ones and enable policy-makers to make better multi-scale decisions.     

三峡水库消落带植物叶片光合与营养性状特征

自2007年三峡大坝试运行以来,其独特的人工水位调度节律给当地的水库消落带生态系统带来了巨大的负面影响。植物功能性状可以反映某一特殊生境植物的生理生态过程特殊性,是指示生态系统结构与功能的有效指标。因此,在三峡水库消落带形成2a后,于2009年调查了消落带的42种适生植物以及对照带33种植物的6个叶片功能性状:最大净光合速率(Amax)、叶片气孔导度(Gs)、比叶重(LMA)、叶片全氮含量(Nmass)、全磷含量(Pmass)和全钾含量(Kmass)。运用标准化主轴回归分析对消落带植物叶片各功能性状之间关系进行分析,并对照全球尺度叶片功能性状数据库,旨在说明反季节淹水对消落带植物叶片功能性状之间关系与全球尺度对比发生了哪些变化。同时,运用成对方差t检验的分析方法,对比了在消落带和对照带都存在的33个种的叶片光合与营养性状之间的差异,以阐明消落带植物对消落带特殊生境的生理响应。结果表明:(1)消落带植物叶片各性状关系呈现出与全球尺度基本一致的格局,表现出植物叶性状之间关系的趋同性;(2)消落带植物Amass、Nmass、Pmass和Kmass显著高于全球尺度,而LMA则显著低于全球尺度。处于驯化阶段的消落带植物各叶片性状处在全球叶片经济型谱"低投入-快速回收"的一端。(3)消落带植物叶片Amass与对照带相比,有显著提高。表明三峡水库消落带植物叶片光合能力得到显著提高,这可能是其适应消落带特殊生境的关键生理生态对策之一。     

Mechanism of metabolic adaptation

The paper presents results of investigations on some mechanisms of metabolic adaptation in mammals. There are four sections in the tissue metabolic system of acid-base homeostasis: polyamines as factors of metabolic adaptation; significance of carbon dioxide for metabolic response formation in hypobiosis; polyamines metabolism in hypobiosis. Peculiarities of intermediate metabolism have been analyzed in animal tissues under the changes in H+, CO2 and HCO3- concentrations. Basing on a new interpretation of the experimental data and detected regularity in the metabolism, conclusion on the existence of a new acid-base homeostasis system in the tissues has been made. The results of polyamines metabolism investigations in the mammals under the stress have been described. The experimental data make us to believe that changes in polyamines synthesis and ODC activity in particular, is a part of stereotype nonspecific response to any stress impacts and one of the factors of cell metabolic adaptation. Some new data on mechanisms of formation and control of metabolic status of animals in the natural and artificial hibernation have been presented. The key idea is that in the state of hypobiosis the carbon dioxide (HCO3-) appears as a regulatory factor of metabolic adaptation, which is able to realize its action directly via affecting numerous biochemical events. The participation of polyamines in adaptive metabolic response to hybernation factors is suggested. Some peculiarities of ornithine decarboxilase and transglutaminase activity during the different stages of genuine and artificial hypobiosis have been demonstrated.     

Variational learning for Generalized Associative Functional Networks in modeling dynamic process of plant growth

This paper presents a new statistical techniques — Bayesian Generalized Associative Functional Networks (GAFN), to model the dynamical plant growth process of greenhouse crops. GAFNs are able to incorporate the domain knowledge and data to model complex ecosystem. By use of the functional networks and Bayesian framework, the prior knowledge can be naturally embedded into the model, and the functional relationship between inputs and outputs can be learned during the training process. Our main interest is focused on the Generalized Associative Functional Networks (GAFNs), which are appropriate to model multiple variable processes. Three main advantages are obtained through the applications of Bayesian GAFN methods to modeling dynamic process of plant growth. Firstly, this approach provides a powerful tool for revealing some useful relationships between the greenhouse environmental factors and the plant growth parameters. Secondly, Bayesian GAFN can model Multiple-Input Multiple-Output (MIMO) systems from the given data, and presents a good generalization capability from the final single model for successfully fitting all 12 data sets over 5-year field experiments. Thirdly, the Bayesian GAFN method can also play as an optimization tool to estimate the interested parameter in the agro-ecosystem. In this work, two algorithms are proposed for the statistical inference of parameters in GAFNs. Both of them are based on the variational inference, also called variational Bayes (VB) techniques, which may provide probabilistic interpretations for the built models. VB-based learning methods are able to yield estimations of the full posterior probability of model parameters. Synthetic and real-world examples are implemented to confirm the validity of the proposed methods.     

Seven-day dry immersion: relations between water-electrolyte and cardiovascular responses

The paper presents the results of the experiment with 7-day dry immersion. Eight healthy men were studied before, during and after exposure. It is shown that the primary response involves hemodynamic and water-electrolyte changes. The mechanisms of cardiovascular adaptation to immersion conditions are revealed. In particular, some electrophysiological shifts in propagation of myocardial excitation are found, leading to increase in "myocardium" index, estimated by analysis of natural small oscillations in the amplitude of the PQRST complex with dispersion ECG mapping. Revealed significant reduction of functional reserves of the cardiovascular regulatory mechanisms in the process of adaptation to dry immersion is of great practical importance. The results suggest that water-electrolyte shifts induced by dry immersion are the basis and the first phase of the further changes in autonomic regulation and myocardial functional state.     

Diagnostic screening of the human myocardium during the bicycle exercise test

The diagnostic and prognostic potentialities of Kardio-Vizor-06 (KV) in early detection of deviations in the myocardial electrophysiological parameters were assessed using the standard functional bicycle stress exercise test. Ten apparently healthy subjects from different age groups were examined. The data obtained with KV (baseline, loading, and in the recovery period) were compared with the results of the standard ECG (12 leads) and blood pressure (BP) methods. Data agreement was observed in 90% of cases; KV underestimated the test tolerance in 10% of cases. Detailed examination of ECG verified the presence of incipient alterations in the myocardium. Thus, unlike other methods, this technology provides unique information and predicts transient functional disorders that are precursors of pathology. The high noise resistance of the automated analysis of the dispersion of the ECG signal makes the device applicable directly during functional loading tests.     

Continuous hidden process model for time series expression experiments

MOTIVATION: When analyzing expression experiments, researchers are often interested in identifying the set of biological processes that are up- or down-regulated under the experimental condition studied. Current approaches, including clustering expression profiles and averaging the expression profiles of genes known to participate in specific processes, fail to provide an accurate estimate of the activity levels of many biological processes. RESULTS: We introduce a probabilistic continuous hidden process Model (CHPM) for time series expression data. CHPM can simultaneously determine the most probable assignment of genes to processes and the level of activation of these processes over time. To estimate model parameters, CHPM uses multiple time series datasets and incorporates prior biological knowledge. Applying CHPM to yeast expression data, we show that our algorithm produces more accurate functional assignments for genes compared to other expression analysis methods. The inferred process activity levels can be used to study the relationships between biological processes. We also report new biological experiments confirming some of the process activity levels predicted by CHPM. AVAILABILITY: A Java implementation is available at http:\\www.cs.cmu.edu\~yanxins\chpm. SUPPLEMENTARY INFORMATION: Supplementary data are available at Bioinformatics online.     

The contact-free control of the functional state: the experience of its practical use]

Application of contactless control method does not create any psychological or physical discomfort for a man and allows to realize diagnostics continuously for a long time, evidently or secretly. These properties of the control determine its effective application in practice. In the paper the data are given of the studies of the functional state of a man-operator using the parameters of the eyelids movements contactlessly recorded in infra-red rays, and the results of diagnostics of patients with depression by the characteristics of their speech, recorded from the microphone. The above data are obtained in practice.     

Effect of Individual Features of the CNS on Efficiency of Relaxation Biofeedback Training in 9- to 10-Year-Old Children

The possibilities of biofeedback training for improvement of the self-control of the functional state (relaxation) were studied in 9- to 10–year-old children. At the first stage, under conditions of electrophysiological experiment, relaxation shifts were assessed in the cycle quiet wakefulness–relaxation–recovery of the initial state by autonomic (skin resistance) and EEG (spectra and coherence) indices. The children were then trained to control their functional state with a computer game including a feedback loop by skin temperature. After the training cycle, children were repeatedly examined in electrophysiological experiment with the instruction to control their state. Comparative analysis of self-induced relaxation changes before and after a successful training course revealed greater shifts of skin resistance and an increase in the number of distant functional connections (especially, in the intermediate and high-frequency EEG subbands), with a significantly increased coherence level during relaxation. A correlation was found between the efficiency of self-regulation training and some individual psychophysiological characteristics (simple motor reaction time, autonomic coefficient, resting EEG). Low efficiency of self-control training was observed in younger schoolchildren with a sharply deviant (from the mean group values) reaction time and autonomic coefficient, as well as with EEG manifestations of functional immaturity of the upper brain regulatory structures. The dependence of the EEG changes on the self-regulation strategy is discussed on the basis of obtained evidence and data in the literature.     

Fungal molecular diagnostics: a mini review

Conventional methods to identify fungi have often relied on identification of disease symptoms, isolation and culturing of environmental organisms, and laboratory identification by morphology and biochemical tests. Although these methods are still fundamental there is an increasing move towards molecular diagnostics of fungi in all fields. In this review, some of the molecular approaches to fungal diagnostics based on polymerase chain reaction (PCR) and DNA/RNA probe technology are discussed. This includes several technological advances in PCR-based methods for the detection, identification and quantification of fungi including real-time PCR which has been successfully used to provide rapid, quantitative data on fungal species from environmental samples. PCR and probe based methods have provided new tools for the enumeration of fungal species, but it is still necessary to combine the new technology with more conventional methods to gain a fuller understanding of interactions occurring in the environment. Since its introduction in the mid 1980's PCR has provided many molecular diagnostic tools, some of which are discussed within this review, and with the advances in micro-array technology and real-time PCR methods the future is bright for the development of accurate, quantitative diagnostic tools that can provide information not only on individual fungal species but also on whole communities.     

Toward a biomechanical tool to evaluate rupture potential of abdominal aortic aneurysm: identification of a finite strain constitutive model and evaluation of its applicability

Knowledge of the wall stresses in an abdominal aortic aneurysm (AAA) may be helpful in evaluating the need for surgical intervention to avoid rupture. This must be preceded by the development of a more suitable finite strain constitutive model for AAA, as none currently exists. Additionally, reliable stress analysis of in vivo AAA for the purposes of clinical diagnostics requires patient-specific values of the material parameters, which are difficult to determine noninvasively. The purpose of this work, therefore, was three-fold: (1) to develop a finite strain constitutive model for AAA; (2) to estimate the variation of model parameters within a sample population; and (3) to evaluate the sensitivity of computed stress distribution in AAA due to this biologic variation. We propose here a two parameter, hyperelastic, isotropic, incompressible material model and utilize experimental data from 69 freshly excised AAA specimens to both develop the functional form of the model and estimate its material parameters. Parametric analyses were performed via repeated finite element computations to determine the effect of varying each of the two model parameters on the stress distribution in a three-dimensional AAA model. The agreement between experimental data and the proposed functional form of the constitutive law was very good (R2 > 0.9). Our finite element simulations showed that the computed AAA wall stresses changed by only 4% or less when both the parameters were varied within the 95% confidence intervals for the patient population studied. This observation indicates that in lieu of the patient-specific material parameters, which are difficult to determine the use of population mean values is sufficiently accurate for the model to be reasonably employed in a clinical setting. We believe that this is an important advancement toward the development of a computational tool for the estimation of rupture potential for individual AAA, for which there is great clinical need.     

Functional and structural aspects of Helicobacter pylori acidic stress response factors

Helicobacter pylori is a striking example of adaptation of a bacterium to a very peculiar niche, the human stomach. Despite being a neutralophile, a sophisticated control of gene expression allows it to live and to proliferate in an environment that cycles from nearly neutral to very acidic. Despite the numerous studies performed on the mechanisms of acid adaptation, the physiological function of a large part of the genes products that are up-regulated or down-regulated is often not clear, in particular in the context of the response of the bacterium to an acidic stress. In this review, we discuss the molecular and functional aspects of some of the proteins that are commonly found overexpressed during the acid stress.