Timing of larval release by Porites astreoides in the northern Florida Keys

 Annual and lunar patterns of larval release by the coral Porites astreoides in the Florida Keys were investigated. Corals were collected monthly and maintained in outdoor, flow-through systems to quantify nightly release of larvae. Planulae were released during a period from 10 days prior to the new moon through 11 days after the new moon, with a peak in release centered on the new moon. The average duration of larval release by a single colony was 9 nights. Although the correlation was low (r=0.292), there was a positive relationship between colony size and number of larvae released. The majority of larval release occurred in April and May, although smaller numbers of larvae were observed from June through as late as September. Larval release appeared to be correlated with the average water temperatures over the 30 days prior to the new moon, peaking when water temperatures were 24.5–27.5 °C. Accepted: 3 August 1998     

Heritable differences in fitness-related traits among populations of the mustard hill coral,Porites astreoides

A population''s potential for rapid evolutionary adaptation can be estimated from the amount of genetic variation in fitness-related traits. Inshore populations of the mustard hill coral (Porites astreoides) have been shown to be more tolerant to thermal stress than offshore populations, but it is unclear whether this difference is due to long-term physiological acclimatization or genetic adaptation. Here, we evaluated variation in growth rate and survival among 38 families of juvenile recruits of P. astreoides spawned by colonies originating from inshore and offshore locations. Recruits were reared in a common garden for 5 weeks and then subjected to two thermal treatments (28  and 31 °C) for 2.5 weeks. The most significant effects were detected during the first 5 weeks, before thermal stress was applied: 27–30% of variance in growth and 94% of variance in recruit survival was attributable to parental effects. Genotyping of eight microsatellite loci indicated that the high early mortality of some of the recruit families was not due to higher inbreeding. Post treatment, parental effects diminished such that only 10–15% of variance in growth rate was explained, which most likely reflects the dissipation of maternal effects. However, offshore-origin recruits still grew significantly less under elevated temperature compared with inshore-origin recruits. These differences observed in naive juvenile corals suggest that population-level variation in fitness in response to different thermal environments has a genetic basis and could represent raw material for natural selection in times of climate change.     

Metagenomic analysis of the microbial community associated with the coral Porites astreoides

The coral holobiont is a dynamic assemblage of the coral animal, zooxanthellae, endolithic algae and fungi, Bacteria,Archaea and viruses. Zooxanthellae and some Bacteria form relatively stable and species-specific associations with corals. Other associations are less specific; coral-associated Archaea differ from those in the water column, but the same archaeal species may be found on different coral species. It has been hypothesized that the coral animal can adapt to differing ecological niches by 'switching' its microbial associates. In the case of corals and zooxanthellae, this has been termed adaptive bleaching and it has important implications for carbon cycling within the coral holobiont and ultimately the survival of coral reefs. However, the roles of other components of the coral holobiont are essentially unknown. To better understand these other coral associates, a fractionation procedure was used to separate the microbes, mitochondria and viruses from the coral animal cells and zooxanthellae. The resulting metagenomic DNA was sequenced using pyrosequencing. Fungi, Bacteria and phage were the most commonly identified organisms in the metagenome. Three of the four fungal phyla were represented, including a wide diversity of fungal genes involved in carbon and nitrogen metabolism, suggesting that the endolithic community is more important than previously appreciated. In particular, the data suggested that endolithic fungi could be converting nitrate and nitrite to ammonia, which would enable fixed nitrogen to cycle within the coral holobiont. The most prominent bacterial groups were Proteobacteria (68%), Firmicutes (10%), Cyanobacteria (7%) and Actinobacteria (6%). Functionally, the bacterial community was primarily heterotrophic and included a number of pathways for the degradation of aromatic compounds, the most abundant being the homogentisate pathway. The most abundant phage family was the ssDNA Microphage and most of the eukaryotic viruses were most closely related to those known to infect aquatic organisms. This study provides a metabolic and taxonomic snapshot of microbes associated with the reef-building coral Porites astreoides and presents a basis for understanding how coral-microbial interactions structure the holobiont and coral reefs.     

Water utilization of tropical hardwood hammocks of the Lower Florida Keys

Summary Predawn water potential of representative plant species, together with stable isotope composition of stem water and potential water sources were investigated in four low-elevation tropical hardwood hammocks in the Lower Florida Keys, during a one year period. Hammock species had the lowest water potentials when soil water content was low and/or soil salinity was high, but differences in groundwater salinity had no effect on the water potential. Comparison of D/H ratio of plant stem water with soil and ground water corroborates the conclusion that they are primarily utilizing soil water and not groundwater. Thus, tropical hardwood hammocks are buffered from saline groundwater, and are able to thrive in areas where groundwater salinity is as high as 25. The effect of sea level rise on these forests may depend more on changes in the frequency of tidal inundation of the soil surface than on changes in groundwater salinity.     

Growth characteristics of the reef-building coral Porites astreoides under different environmental conditions in the Western Atlantic

Skeletal extension (3.67 ± 0.65 mm year⁻¹), density (1.49 ± 0.16 g cm⁻³), and calcification rate (0.55 ± 0.12 g cm⁻² year⁻¹) were determined using annual growth bands of Porites astreoides skeletons collected in three different reef systems in the Western Atlantic. The corals showed a low-density annual growth band at their apex, and seasonal timing of low and high-density band formation in P. astreoides appears to be similar at the three study sites in the Western Atlantic. The range of values presented here, for the three growth variables, spans the known range of skeletal-growth variability in P. astreoides for the Western Atlantic. The relationships between the growth parameters were similar to those previously described by other authors for massive Porites species from the Indo-Pacific, suggesting that P. astreoides has the same growth strategy, primarily investing calcification resources in extension rate. It is noteworthy that the P. astreoides population growing off the northwest coast of Cuba had similar growth characteristics as populations from the Caribbean region which were different from populations in the Gulf of Mexico, which seem to be isolated and adapted for growth at higher average sea-surface temperatures.     

Distribution and trophic ecology of chaetognaths in the western Mediterranean in relation to an inshore-offshore gradient

This study examines the distribution patterns and feeding ecologyof chaetognaths in the Catalan Sea in relation to mesoscalefeatures along an inshore–offshore gradient. The studywas conducted during two different periods of the year: latespring of 1995 and late summer of 1996. The two periods differedin hydrographic conditions and mesoscale processes, which affectedthe distribution patterns of the different species of chaetognathsfound. The diet of the chaetognaths was mainly composed of copepodsand differed between species. Prey size was not always stronglyrelated to chaetognath size and for certain species, there wasan overlap in prey size spectrum. Trophic niche breadth (ona ratio scale) appeared to be constant with growth. Ingestionrates and predation pressure by chaetognaths did not followa clear trend related to the mesoscale features in the area,such as the presence of a density front. The impact of chaetognathson copepod standing stock appeared to be extremely low (<1%),but it became more relevant when the species and prey size specificityof the chaetognaths was taken into account.     

Diversity and dynamics of bacterial communities in early life stages of the Caribbean coral Porites astreoides

In this study, we examine microbial communities of early developmental stages of the coral Porites astreoides by sequence analysis of cloned 16S rRNA genes, terminal restriction fragment length polymorphism (TRFLP), and fluorescence in situ hybridization (FISH) imaging. Bacteria are associated with the ectoderm layer in newly released planula larvae, in 4-day-old planulae, and on the newly forming mesenteries surrounding developing septa in juvenile polyps after settlement. Roseobacter clade-associated (RCA) bacteria and Marinobacter sp. are consistently detected in specimens of P. astreoides spanning three early developmental stages, two locations in the Caribbean and 3 years of collection. Multi-response permutation procedures analysis on the TRFLP results do not support significant variation in the bacterial communities associated with P. astreoides larvae across collection location, collection year or developmental stage. The results are the first evidence of vertical transmission (from parent to offspring) of bacteria in corals. The results also show that at least two groups of bacterial taxa, the RCA bacteria and Marinobacter, are consistently associated with juvenile P. astreoides against a complex background of microbial associations, indicating that some components of the microbial community are long-term associates of the corals and may impact host health and survival.     

Changes in traits of shrub canopies across an aridity gradient in northern Patagonia, Argentina

Low and highly variable precipitation pulses exert a strong selective pressure on plant traits and this might provide axes of ecological differentiation among plant species in arid ecosystems. We asked whether aridity contributes to maintain high diversity of species and morphotypes in shrub canopies. We selected eleven study sites evenly distributed across a 400-km transect in northern Patagonia, Argentina. Precipitation is low and highly variable within and between years but almost homogeneous across the transect (125–150 mm). Mean annual temperature varied, however, ranging from 8 °C (west) to 13.5 °C (east) creating a west–east gradient of aridity (aridity index from 3.7 to 7.3, respectively). Sheep grazing commenced in the early 1900s at a similar intensity across the transect. We recorded the richness and cover of shrubs by species and by morphotypes (drought deciduous tall shrubs, evergreen tall shrubs, medium shrubs, and dwarf shrubs), and further calculated the species and morphotype Shannon diversity index at each site. We assessed the presence of spiny leaves, leaf pubescence, thorny stems, and photosynthetic stems in shrub species of all morphotypes and collected green leaves of the dominant shrub species (more than 80% of the total shrub cover) to assess the leaf area, leaf mass per unit area, N-, lignin- and soluble phenolic-concentrations per species at each site. Richness and diversity of shrub species and morphotypes were positively associated with aridity. The richness and diversity of shrub species with pubescent leaves and thorny stems, and nitrogen concentration in green leaves of dominant shrubs increased with increasing aridity. We conclude that our findings on increased diversification in life history traits, species and morhotypes in shrub canopies with increasing aridity support the hypothesis that variability in aridity provides axes of ecological differentiation among shrub species facilitating their coexistence.     

Seasonal changes on planktonic diatom communities along an inshore-offshore gradient in the Gulf of Gabes (Tunisia)

We investigated the composition, biomass and cell size dynamics of the marine planktonic diatom species along a coastal-open sea gradient in relation to the hydrological characteristics, during four oceanographic cruises in July 2005, May–June 2006, September 2006 and March 2007 in the Gulf of Gabes. The study of the marine planktonic diatoms throughout the sampling period showed the presence of 40 different species belonging to 22 pennate and 18 centric diatom species. Centric diatoms were more abundant than the pennate ones; 56% and 44% of total diatom abundance, respectively. Diatoms were very abundant, representing about 60% of the total phytoplankton abundance, with an exception in July 2005 (19%) during which Dictyochophyceae were the most dominant group (41% of the total phytoplankton abundance). Diatoms, which were dominant in the coastal samples, mainly proliferate in the semi-mixing conditions (May–June 2006), whereas they declined in the offshore area, most likely due to silicate shortage. In this period, in spite of the high abundance of diatom planktonic cells, only diatom biomass was correlated with silica amount, proving that biomass was a better ecological bio-indicator than abundance. The results suggest that the marine planktonic diatoms taxa were generally adapted to specific hydrological structure. In fact, the dominance index of diatoms showed that the biodiversity of diatoms increased gradually along the coastal-open sea gradient except in May–June 2006 during which a slight decrease along the inshore towards offshore areas was observed. This index increase depended on a coastal-open sea distance during thermal stratification (July 2005 and September 2006) and mixing periods (March 2007).     

Effects of predator exclusion on recruit survivorship in an octocoral (Briareum asbestinum) and a scleractinian coral (Porites astreoides)

Recruits of the Caribbean scleractinian coral Porites astreoides and the octocoral Briareum asbestinum were established on artificial substrata and reared on a reef in cages designed to exclude various classes of organisms known to feed on corals. Post-settlement survivorship of recruits was measured for periods of 2 weeks (B. asbestinum) and 1 month (P. astreoides) on East Turtle Reef in the Florida Keys during May and June 2010. Predator exclusion did not affect survivorship among P. astreoides recruits during the study. Recruits of B. asbestinum experienced lower survivorship in treatments that allowed access by fish compared with fish exclusion treatments. The results indicate that predation may be an important determinant of post-settlement mortality among B. asbestinum recruits, and fishes are the primary contributors to predation-induced mortality. B. asbestinum recruit survivorship differed by an order of magnitude between recruits in the control condition and those in the predator exclusion (0.087 and 0.372, respectively). The findings illustrate the need to consider the effects of interactions early in life on the survival, propagation, and recovery of coral populations.     

Gene expression under chronic heat stress in populations of the mustard hill coral (Porites astreoides) from different thermal environments

Recent evidence suggests that corals can acclimatize or adapt to local stress factors through differential regulation of their gene expression. Profiling gene expression in corals from diverse environments can elucidate the physiological processes that may be responsible for maximizing coral fitness in their natural habitat and lead to a better understanding of the coral's capacity to survive the effects of global climate change. In an accompanying paper, we show that Porites astreoides from thermally different reef habitats exhibit distinct physiological responses when exposed to 6 weeks of chronic temperature stress in a common garden experiment. Here, we describe expression profiles obtained from the same corals for a panel of 9 previously reported and 10 novel candidate stress response genes identified in a pilot RNA‐Seq experiment. The strongest expression change was observed in a novel candidate gene potentially involved in calcification, SLC26, a member of the solute carrier family 26 anion exchangers, which was down‐regulated by 92‐fold in bleached corals relative to controls. The most notable signature of divergence between coral populations was constitutive up‐regulation of metabolic genes in corals from the warmer inshore location, including the gluconeogenesis enzymes pyruvate carboxylase and phosphoenolpyruvate carboxykinase and the lipid beta‐oxidation enzyme acyl‐CoA dehydrogenase. Our observations highlight several molecular pathways that were not previously implicated in the coral stress response and suggest that host management of energy budgets might play an adaptive role in holobiont thermotolerance.     

The effect of temperature on the size and population density of dinoflagellates in larvae of the reef coral Porites astreoides

Abstract. Pre-settlement events play an important role in determining larval success in marine invertebrates with bentho-pelagic life histories, yet the consequences of these events typically are not well understood. The purpose of this study was to examine the pre-settlement impacts of different seawater temperatures on the size and population density of dinoflagellate symbionts in brooded larvae of the Caribbean coral Porites astreoides. Larvae were collected from P. astreoides at 14–20 m depth on Conch Reef (Florida) in June 2002, and incubated for 24 h at 15 temperatures spanning the range 25.1°–30.0°C in mean increments of 0.4±0.1°C (±SD). The most striking feature of the larval responses was the magnitude of change in both parameters across this 5°C temperature range within 24 h. In general, larvae were largest and had the highest population densities of Symbiodinium sp. between 26.4°–27.7°C, and were smallest and had the lowest population densities at 25.8°C and 28.8°C. Larval size and symbiont population density were elevated slightly (relative to the minimal values) at the temperature extremes of 25.1°C and 30°C. These data demonstrate that coral larvae are highly sensitive to seawater temperature during their pelagic phase, and respond through changes in size and the population densities of Symbiodinium sp. to ecologically relevant temperature signals within 24 h. The extent to which these changes are biologically meaningful will depend on the duration and frequency of exposure of coral larvae to spatio-temporal variability in seawater temperature, and whether the responses have cascading effects on larval success and their entry to the post-settlement and recruitment phase.     

重庆市6种常见园林植物功能性状对城乡生境梯度的响应

功能性状作为联系植物、环境与生态系统的桥梁,对研究植物适应不同生境的策略意义重大。本研究以重庆主城区中华蚊母树(Distylium chinense)、鸡爪槭(Acer palmatum)、檵木(Loropetalum chinense)、构树(Broussonetia papyrifera)、银杏(Ginkgo biloba)、玉兰(Magnolia denudata)为对象,遴选植物功能性状及生物量分配指标,定量分析了其在不同城市环境下的差异性,旨在考查植物对于城市生态环境的适应策略。结果表明:除比叶面积和生物量分配比例外,其他功能性状包括营养器官和生殖器官随乡-郊-城环境梯度发生显著变化(P<0.05),表现为其数值随环境梯度显著下降;除鸡爪槭外,其余5种植物分配给繁殖器官的资源最多,分配给茎的资源最少;根据植物功能性状主成分分析,将6种植物分为3类:营养器官和生殖器官基本未受城市环境影响类,营养器官未受影响而生殖器官受损类,以及营养和生殖器官均受损类;植物功能性状综合评价显示,在森林公园中植物性状表现最好,郊区公园次之,城市公园中最差。     

Patterns of spread of coral disease in the Florida Keys

Reefs in the Florida Keys are experiencing a dramatic increase in the number of localities and number of species with coral disease. In extensive surveys from Key Largo to Key West in 160 stations at 40 randomly chosen sites, there has been a dramatic increase in (1) the number of locations exhibiting disease (82% of all stations are now affected, a 404% increase over 1996 values), (2) the number of species affected (85% of all species are now affected, a 218% increase over 1996 values), and (3) the rate of coral mortality (the deep fore-reef at Carysfort experienced a 60% reduction of living coral cover during the survey). Two null hypotheses (1) that the incidence of disease has remained constant through time and (2) that the apparent increase in disease is due to a lack of comparable earlier data, are both falsified. Different diseases exhibit different patterns of spread: some diseases (e.g. black band) exhibit low incidence and jump rapidly between sites; other diseases (e.g. white pox) exhibit patchy distributions and increase in frequency at affected sites from one year to the next. The central question of why so many corals are becoming simultaneously susceptible to a host of marine pathogens remains unanswered.     

Correction to: Functional leaf traits indicate phylogenetic signals in forests across an elevational gradient in the central Himalaya

Journal of Plant Research - Traits are the primary attributes that distinguish a species niche. Species and higher taxa are part of a structured phylogeny, and variation in plant traits depends on...     

Improving the analysis of low heritability complex traits for enhanced genetic gain in potato

Key message

Best linear unbiased prediction (BLUP), which uses pedigree to estimate breeding values, can result in increased genetic gains for low heritability traits in autotetraploid potato.

Abstract

Conventional potato breeding strategies, based on outcrossing followed by phenotypic recurrent selection over a number of generations, can result in slow but steady improvements of traits with moderate to high heritability. However, faster gains, particularly for low heritability traits, could be made by selection on estimated breeding values (EBVs) calculated using more complete pedigree information in best linear unbiased prediction (BLUP) analysis. One complication in applying BLUP predictions of breeding value to potato breeding programs is the autotetraploid inheritance pattern of this species. Here we have used a large pedigree, dating back to 1908, to estimate heritability for nine key traits for potato breeding, modelling autotetraploid inheritance. We estimate the proportion of double reduction in potatoes from our data, and across traits, to be in the order of 10 %. Estimates of heritability ranged from 0.21 for breeder’s visual preference, 0.58 for tuber yield, to 0.83 for plant maturity. Using the accuracies of the EBVs determined by cross generational validation, we model the genetic gain that could be achieved by selection of genotypes for breeding on BLUP EBVs and demonstrate that gains can be greater than in conventional schemes.     

Breeding system and pollination of a narrowly endemic herb of the Lower Florida Keys: impacts of the urban-wildland interface

We examined the breeding system and pollination of Chamaecrista keyensis Pennell (Fabaceae: Caesalpinioideae) and the effects of urban edge and mosquito control on reproduction of this rare endemic herb of the Lower Florida Keys. Controlled hand-pollination treatments were applied to plants in the field. Although C. keyensis flowers are self-compatible, they are not capable of automatic selfing. Inbreeding depression was observed in both seed set and percentage seed germination. Bees of seven genera were observed visiting C. keyensis flowers during the peak flowering season (June to July). Only Xylocopa micans and Melissodes spp. may be effective pollinators for C. keyensis, as they were the only bees that "buzz pollinate" this species, which has poricidal anther dehiscence. Chamaecrista keyensis received substantially more visits by X. micans, but fewer visits from Melissodes spp. in urban-edge vs. forest sites. Aerial mosquito spraying may exacerbate the existing pollinator limitation suffered by C. keyensis by reducing the number of visits by the buzz-pollinating bees. Individuals of C. keyensis at urban edges produced fewer seeds per fruit than did individuals in a pristine forest mainly because of greater insect seed predation.     

Distribution of Mycobacterium avium subspecies paratuberculosis in the lower Florida Keys

Johne's disease, a fatal and contagious gastrointestinal infection caused by Mycobacterium avium subsp. paratuberculosis (Map), was first diagnosed in an endangered Florida Key deer (Odocoileus virginianus clavium) in 1996 and later in six additional Key deer deaths from 1998 to 2004. We investigated the geographic distribution of Map in the Lower Florida Keys from February 2005 through May 2006 via collection of blood and fecal pellets from 51 live-captured deer, collection of 550 fecal samples from the ground, and by necropsies of 90 carcasses. Tissue and fecal samples also were submitted from 30 raccoons (Procyon lotor), three feral cats (Felis catus), an opossum (Didelphis virginiana), and a Lower Keys marsh rabbit (Sylvilagus palustris hefneri). Mycobacterium avium subsp. paratuberculosis was identified in 23 Key deer fecal samples collected from the ground, tissue samples from two clinically ill Key deer, and from the mesenteric lymph node of a raccoon. The results of this study indicate that Map persists in the Key deer population and environment at a low prevalence, but its distribution currently is limited to a relatively small geographic area within the range of Key deer.