Hydrogen atom initiated chemistry

Summary H atoms have been created by the photolysis of H₂S. These then initiated reactions in mixtures involving acetylene-ammonia-water and ethylene-ammonia-water. In the case of the acetylene system, the products consisted of two amino acids, ethylene and a group of primarily cyclic thio-compounds, but no free sulfur. In the case of the ethylene systems, seven amino acids, including an aromatic one, ethane, free sulfur, and a group of solely linear thio-compounds were produced. Total quantum yields for the production of amino acids were ~ 3 × 10^–5 and ~ 2 × 10^–4 with ethylene and acetylene respectively as carbon substrates. Consideration is given of the mechanism for the formation of some of the products and implications regarding planetary atmosphere chemistry, particularly that of Jupiter, are explored.     

Aerotaxis and chemotaxis ofAzospirillum brasilense: A note

Azospirillum brasilense was attracted to capillaries containing either phosphate buffer, distilled water, or saline. The number of bacteria in these capillaries was 3–4×10⁴, after 1 h of incubation. In the presence of phosphate buffer + attractants, the number of cells accumulated in the capillary increased only to 5×10⁴–1.1×10⁵ cells. It was not possible, therefore, to measure chemotaxis inA. brasilense as distinct from aerotaxis by the capillary method. Chemotaxis was observed in semi-solid agar plates and was determined by a growth band oriented towards the attractant. Positive chemotactic response was obtained with peptone, tryptone, yeast extract, amino acids, organic acids, arabinose and galactose.     

The uptake and incorporation of leucine and cystine by the mycelial and yeastlike phases of Blastomyces dermatitidis

Uptake and incorporation of L-leucine-C¹⁴ and L-cystine-S³⁵ was studied in the mycelial [MP] and yeastlike [YP] phases of the dimorphic fungal pathogen,Blastomyces dermatitidis. Both amino acids entered the cells of the two morphological forms ofB. dermatitidis by a permease-like system at low external concentrations of substrate. At high substrate levels, the amino acids entered the cells by a simple diffusion-like process in addition to the permease-like system. Michaelis-Menten constants [K_m] for L-leucine was found to be 1.1×10^–5 M and 4.4×10^–5 M for the MP and YP phases, respectively. The K_m for L-cystine was found to be 1.0×10^–5 M for the MP and 0.5×10^–5 M for the YP. A requirement for energy supplied by metabolic activity was demonstrated by the inhibition of uptake and incorporation of the amino acids by cells incubated with either 2,4-dinitrophenol or sodium azide. Amino acid uptake was broadly tolerant of hydrogen ion concentration, but definite optima were demonstrated at pH 7.0 to 7.5.     

Synthesis of organic compounds from carbon monoxide and water by UV photolysis

The photolysis of water vapor with carbon monoxide at 1849 Å yields alcohols, aldehydes and organic acids, with an overall quantum yield of 3.3×10^–2. This rather high quantum yield could have led to a contribution of 10¹¹ organic molecules cm^–2 sec^–1 to the pool of organic material on the primitive Earth. The reactions are initiated by the photolysis of water molecules and the resulting hydrogen atoms reduce the carbon monoxide to a variety of one and two carbon compounds. The organic molecules are dissolved in water and thus escape destruction by photolysis. Photolysis of water vapor with carbon dioxide did not yield organic compounds under these conditions.     

Negative chemotaxis inSpirochaeta aurantia

A repellent-gradient tube assay for negative chemotaxis inSpirochaeta aurantia was developed and used to demonstrate that acids, alcohols, and sulfide were effective chemorepellents. The threshold concentrations (the lowest concentration of a repellent that elicited a detectable response) for benzoic acid, salicylic acid, and butyric acid were 3×10^–5 M. For acetic acid, propionic acid,p-aminobenzoic acid, propanol, butanol, and sulfide, threshold concentrations were 10^–3 to 10^–4 M. For formic acid, glyoxylic acid, glycolic acid, lactic acid, malonic acid, succinic acid, fumaric acid, methanol, ethanol, ethanediol, and propanediol, threshold concentrations were 10^–2 to 10^–3 M. Compounds such as methylamine, ethanolamine, formaldehyde, benzene, toluene, phenol, indol, nickel, and various amino acids did not elicit a repellent response. The results of competition experiments suggest that the repellents identified are recognized by three distinct receptors: a weak acid receptor, an alcohol receptor, and a sulfide receptor. The repellent responses to weak acids were maximal at pH 5.5 and decreased with increasing pH, whereas the response to propanol was unaffected by pH over a range of 5.5–8.0. The demonstration of negative chemotaxis inS. aurantia and the identification of distinct classes of repellents will allow further experimentation directed at understanding chemosensory mechanisms in spirochetes.     

Planktonic bacterial biomass and seasonal pattern of the heterotrophic uptake and respiration of glucose and amino acids in the shallow sandpit lake of Créteil (Paris Suburb,France)

Biomass and activity of planktonic bacteria were investigated during a one year study in a shallow sandpit lake. The shallowness of the lake helped keep the water column homogeneous regarding bacterioplankton. Small free-living bacteria (0.03 µm³ cell^–1) dominated the populations throughout the period studied. Bacterial abundances varied from 1 to 11 × 10⁶ cells ml^–1. Kinetic parameters (V _max, K + S and T) were determined with ¹⁴C labelled compounds (glucose and amino acids mixture). V _max values were high and averaged 0.056 and 0.050 µgCl^–1 h^–1 for glucose and amino acids respectively. Maximal V _max values were observed in summer at the highest temperatures, but also in early spring. T values were much greater in winter. K + S values were significantly higher for amino acids (3 µg Cl^–1) than for glucose (1 µg Cl^–1). A low percentage of mineralization (about 25% for both tracers) could be the expression of the high growth efficiency expected when bacteria are growing at the expense of low molecular weight compounds as phytoplankton exudates.     

Seasonal coupling between phyto- and bacterioplankton in a sand pit lake (Créteil lake,France)

Phyto- and bacterioplankton biomass and activity were simultaneously measured during the course of one year in the shallow Créteil Lake (France).Phytoplankton was dominated, during the whole year, by small-sized organisms (10 to 25 µm). Bacteria were in a majority small coccoids (<0.3 µm). Phyto -and bacterioplankton abundances averaged respectively 3.3 × 10⁶ cells l^–1 and 6 × 10⁹ cells l^–1.The phasing of the activity and biomass periods suggest a close coupling between phyto- and bacterioplankton. There were two distinct periods of high activity and biomass. Maximal values were observed in summer but an early increase occurred also in winter. Low or undetectable phytoplankton excretion rates, when heterotrophic activity was maximum, indicated a bacterial uptake of up to 100% of the released algal products during the incubation period. Heterotrophic uptake measurements with both glucose and amino acids revealed a seasonal change of the substrates in the lake, glucose uptake being associated more with the maximum activity of the algae, while the amino acids uptake was relatively higher during their decline.The maximal photosynthetic rate averaged 21.5 mgC m^–3 h^–1 and mean Vmax values were 0.056 and 0.050 mgC m^–3 h^–1 respectively for glucose and amino acids uptake.     

Methodology for assessing respiration and cellular incorporation of radiolabeled substrates by soil microbial communities

A method is described for determining biodegradation kinetics of both naturally occurring and xenobiotic compounds in surface and sub-surface soil samples. The method measures both respiration and uptake into cellular biomass of¹⁴C-labeled substrates. The estimation of biomass incorporation entailed removal of cells from soil particles by washing the soil with a polyvinyl-pyrrolidone/pyrophosphate solution and H₂O₂. After separation of the cells and the soil particles by centrifugation, the cells were trapped on membrane filters for liquid scintillation counting. Mass balances were easily obtained. The technique was used to measure metabolic activity in soil profiles, including unsaturated and saturated zones. First order rate constants (K₁) were in the range of 10^–3–10^–2 hour^–1 for amino acid metabolism and 10^–5–10^–4 hour^–1 for m-cresol metabolism. Saturation kinetics were observed for amino acids and m-cresol. m-Cresol K₁ values for uptake often exceeded those for respiration by greater than a factor of ten. V_max values were low (amino acids, 10¹–10² ng g^–1 hour^–1; m-cresol, 10^–1 ng g^–1 hour^–1), whereas K_m values were quite high (amino acids, 10³–10⁴ ng g^–1; m-cresol 10³–10⁵ ng g^–1). Saturation was not observed in many horizons even at 10⁵ ng g^–1 dry soil. Frequently, respiration obeyed saturation kinetics whereas uptake was first order. It is concluded that measuring only kinetics of respiration may lead to severe underestimations of biodegradation rates.     

High frequency of stable 5-methyl-DL-tryptophan resistance in Brassica nigra cell suspension cultures

Suspension-cultured cells of Brassica nigra resistant to growth inhibition by 5-methyl-DL-tryptophan were isolated at a high frequency estimated to be in the range of 5×10^–4 to 7×10^–3. A resistance of 20-fold was stable in the absence of selective pressure. A subline with a stable resistance of 115-fold was derived by 3 months growth in the presence of high concentrations of the analogue. The target enzyme, anthranilate synthetase, appeared normal in the variant but levels of alanine, glutamine and related amino acids were elevated. That this change may confer resistance to 5MT was demonstrated by supplementing the growth medium of sensitive cells with alanine, glutamine and glutamate.     

Formation and characterization of marigranules from tryptophan and sugars

We found that molecular oxygen and aromatic amino acids such as tryptophan, tyrosine and phenylalanine were essential for the formation of marigranules. Among aromatic amino acids, tryptophan gave the best yield of marigranules. Among indole derivatives, kynurenine gave the best yield of marigranules. Large marigranules (0.3–3 m in diameter) were formed from tryptophan in the presence of Ca²⁺ and Mg²⁺, and small marigranules (0.2–0.6 m in diameter) were produced in the absence of such divalent metal ions. Marigranules formed from tryptophan were partially solubilized with methanol and completely solubilized with dimethyl sulfoxide and dimethyl-formamide. The solubilized marigranules consisted of polymers with molecular weights of 2×10³ and 10⁵–10⁷ daltons. The methanol-soluble fraction provided well-defined vesicles upon sonication. Marigranule-like particles were formed from D,L-glyceraldehyde, D-erythrose and D-ribose but they were not formed from glycolaldehyde, L-arabinose and D-glucose. Among sugars, D-erythrose gave the best yield of the particles.     

The rates of evolution in some ribosomal components

Summary The rate of nucleotide substitution (k(nuc)) of 5s RNA was estimated to be (1.8 ± 0.5) × 10^–10 per site per year by comparing the nucleotide sequences of human andXenopus 5s RNA and using the geological time elapsed since the separation of mammals and amphibians. Similarly, k(nuc) of 5.8s rRNA was calculated to be 0.93 – 1.4 × 10^–10 per site per year from the sequences of rat hepatoma cells andSaccharomyces cerevisiae. For the comparison of these data with the amino acid substitution rate of known proteins, the k(nuc) values of 5s rRNA and 5.8s rRNA were converted to the rate of amino acid substitution (k(aa)). The k(aa) values in pauling units were 0.4 and 0.2 – 0.3, respectively.The average k(aa) of ribosomal proteins was also estimated to be 0.2 – 0.3 pauling from the N-terminal amino acid sequences of seventeen 30s ribosomal proteins ofBacillus stearothermophilus andEscherichia coli. Thus, the evolutionary rates of these ribosomal components studied here are similar to each other; they are considerably slower than that of the known cellular proteins. Most, if not all, of the replacements in ribosomal proteins occurred between amino acids of a chemically similar nature.     

Sedimentation Rate of Seston during the Formation of Temperature Stratification after Ice Break-up in the Partly Meromictic Lake Verevi

The small strongly stratified hard-water hypertrophic lake Verevi (max. depth 11.0 m, surface area 12.6 ha, mean depth 3.6 m) was investigated in 2000 and in 2001. The lake is sheltered from winds, and the role of waves in mixing the water column is minimal. Eutrophication favours the strengthening of stratification. Early warm springs cause a fast stagnation of the water column forming partly meromictic conditions. Seston content of water and in sediment traps in 3 layers was measured several times during the formation of stratification. Besides measuring particulate matter, in 2001, the nutrient content of the trapped sediment was analysed. During the first 7 days of the investigation, 30% of the total particle sedimentation took place. The sedimentation rate of particulate matter was 0.4–6.3 g m^–2 d⁻¹ dry weight in different layers of the water column. Daily average sedimentation loss rate was 27% of the total amount of seston of the epilimnion, whilst from the meta- and hypolimnion the settling was much slower (9.6 and 7.3%, respectively). In our experiments with twin sediment traps, to one of which formaldehyde was added, the PO₄³⁻-P concentration was 19% smaller in the trap without formaldehyde, probably due to planktonic uptake. The relationship between primary and export production is loop-like. The shape was irregular, indicating a high grazing rate of zooplankton.     

Impact of carbon and nitrogen nutrition on the quality, yield and composition of blastospores of the bioinsecticidal fungus Paecilomyces fumosoroseus

The impact of growing cultures of Paecilomyces fumosoroseus in liquid media containing four combinations of glucose and casamino acids (8 g l^–1 or 80 g l^–1 glucose, 1.32 g l^–1 or 13.2 g l^–1 casamino acids) was evaluated, based on blastospore production, germination rate, viability after freeze-drying and short-term storage stability. When blastospores were produced using a high casamino acid concentration, blastospore yields and germination rates were significantly higher (13.2–18.5×10⁷ blastospores ml^–1, 50–60% germination after 4 h), compared to cultures grown in media containing lower casamino acid concentrations (0.4–2.3×10⁷ blastospores ml^–1, 10–20% germination after 4 h). Chemical analyses of blastospore composition showed that accelerated blastospore germination may be related to increased proteinaceous reserves rather than to glycogen or lipid accumulation. Tolerance to freeze-drying by blastospores suspended in spent medium was enhanced by a high initial casamino acid concentration in the culture medium (75% survival) and by the residual glucose concentrations in the spent medium. Under the conditions of this study, the storage stability of blastospores of P. fumosoroseus was unaffected by the nutritional condition in which they were produced.     

Diel variation in concentration,assimilation and respiration of dissolved free amino acids in relation to planktonic primary and secondary production in two eutrophic lakes

Concentration of dissolved free amino acids (DFAA) and assimilation of the 5 most abundant DFAA (glutamic acid, serine, glycine, alanine and ornithine) were measured at 3-h intervals over 27 h in two Danish, eutrophic lakes. The carbon flux of the amino acid assimilation was compared with the major routes of carbon flux, including primary production, bacterial production and zooplankton grazing. In Frederiksborg Slotssø, the mean DFAA concentration was 275 nM with distinct peaks (up to 783 nM) 3 h after sunrise. Assimilation rates of the 5 amino acids amounted on the average to 2.03 µg Cl^–1 h^–1, but high values up to 7.41 µg Cl^–1 h^–1 occurred 3 h after sunrise and at midnight. The mean turnover time of the amino acid pools was 3.2 h. In Lake Mossø, the mean DFAA concentration was 592 nM with peak of 1 161 nM at dusk. The assimilation rate averaged 0.44 µg Cl^–1 h^–1, and the mean turnover time of the amino acid pools was 39 h. In Lake Mossø, similar turnover times of glutamic acid and serine were determined from the ¹⁴C-amino acid tracer technique and Michaelis-Menten uptake kinetics, indicating that the tracer technique gave reliable values of the actual assimilation. The average respiration percentages of the assimilated amino acids were 45% in Frederiksborg Slotssø and 51% in Lake Mossø. Extracellular organic carbon (EOC) released from the phytoplankton contributed DFAA to the water. In Lake Mossø, 81% of the ambient EOC pool was <700 daltons and 9.3% of the EOC was DFAA. This corresponded to about 2.4% of the DFAA pool. Bacterial productivity, determined by means of frequency of dividing cells and ³⁵S-SO₄ dark uptake techniques gave similar results and constituted 4.5 and 3.7 µg Cl^–1 h^–1 in Frederiksborg Slotssø and Lake Mossø, respectively. The bacterial productivity suggested that DFAA were essential substrates to the bacteria, especially in Frederiksborg Slotssø. The zooplankton biomass in Frederiksborg Slotssø was six times larger than that in Lake Mossø, but cladocerans were dominant in both lakes. The zooplankton grazing probably was an important regulatory factor for the bacterial productivity.     

Purification and characterization of a proteinase inhibitor from field bean, Dolichos lablab perpureus L

A proteinase inhibitor resembling Bowman-Birk family inhibitors has been purified from the seeds of cultivar HA-3 of Dolichos lablab perpureus L. The protein was apparently homogeneous as judged by SDS–PAGE, PAGE, IEF, and immunodiffusion. The inhibitor had 12 mole% 1/2-cystine and a few aromatic amino acids, and lacks tryptophan. Field bean proteinase inhibitor (FBPI) exhibited a pI of 4.3 and an M _r of 18,500 Da. CD spectral studies showed random coiled secondary structure. Conformational changes were detected in the FBPI–trypsin/chymotrypsin complexes by difference spectral studies. Apparent K _a values of complexes of inhibitor with trypsin and chymotrypsin were 2.1 × 10⁷ M^–1 and 3.1 × 10⁷ M^–1, respectively. The binary and ternary complexes of FBPI with trypsin and chymotrypsin have been isolated indicating 1:1 stoichiometry with independent sites for cognate enzymes. Amino acid modification studies showed lysine and tyrosine at the reactive sites of FBPI for trypsin and chymotrypsin, respectively.     

Influence of mefluidide on growth,development, and cell wall digestibility of sorghum

Application of mefluidide (N-[2,4-dimethyl-5-([(trifluoromethyl)sulfonyl]amino) phenyl]acetamide) inhibits plant development in perennial grasses. This study examined the effect of mefluidide on the morphological development and digestibility of sorghum. In the greenhouse, 5.9 × 10^–5 g active ingredient (a.i.) plant^–1 applied at the seedling, eight-leaf and boot stages reduced mean plant height 70%, 59%, and 2%, respectively. Heights were also reduced 14%, 15% and 35% by 5.9 × 10^–8, 5.9 × 10^–7 and 5.9 × 10^–6 gram a.i. plant^–1 applied at the eight-leaf stage. Field application of 0.26 or 0.52 kg ha^–1 mefluidide at either the eight-leaf or flagleaf stage reduced mean plant height of all cultivars. Basal tiller numbers increased 319% 28 d, and dry matter production was reduced 65% 42 d following mefluidide application at the eight-leaf stage. Treated stems were 34% higher and treated leaves were 7% higher in cellulase dry matter digestibility than control plants following mefluidide application at the eight-leaf stage. These results indicate that mefluidide application to vegetative stages in sorghum may enhance the forage value of the plants while it inhibits normal plant growth.     

Amino-acid uptake by mussels,Mytilus edulis,from natural sea water in a flow-through system

Natural Wadden Sea water taken from the North Sea (island of Sylt) was pumped at rates of 150 and 300 l h^–1 through a 4 l plexiglass tube mounted on a wooden tripod on the beach. The tube was densely filled with numerous cleaned mussels,Mytilus edulis. HPLC analysis of sea water showed that total dissolved amino acids are patchily distributed, varying by 100 % within 15 min, though proportions of individual amino acids were remarkably constant. Total amino-acid concentrations were 1528±669 nM (N=3) in October 1983 and 1198±597 nM (N=7) in July 1984. Samples taken at the entrance and the outlet of the experimental mussel bed revealed that the mussels had taken up 29 to 66 % of the amino acids dissolved in sea water. Uptake was observed for all amino acids detected in the chromatograms. 78 % of uptake resulted from the 5 most concentrated amino acids: serine, alanine, glycine/threonine, ornithine, aspartic acid. The nutritional profit obtained from uptake of dissolved amino acids amounted to 12 % (N=5, range 5–23 %, flow rate 150 l h^–1) and to 24 % (N=3, range 13–38 %, flow rate 300 l h^–1) of metabolic rate. The present data suggest that amino-acid concentration predominantly determines the magnitude of the nutritional profit obtained from uptake, and to a smaller extent the flow rate. These findings are in contrast to results of previous studies onAsterias rubens, interacting in small-volume closed systems with the natural bacterial sea water flora (Siebers, 1982). In these experiments, bacteria, due to rapid uptake, outcompeted the sea stars in absorption of dissolved amino acids. The present results suggest that bivalve mussels, can, due to their large gill surface areas and the great amounts of water pumped through their mantle cavity, successfully compete with bacteria in uptake of dissolved organic matter. Mussels, therefore, suggestedly play an important role in cycling dissolved organic matter.     

Genetics of phytopathogenic fungi XIX. Responses of four apple varieties to inoculation with auxotrophic mutants of Penicillium expansum

Summary Variations in content and/or availability of the amino acids methionine, cysteine, arginine, leucine, and histidine in the apple varieties, Jonathan, McIntosh, Red Delicious, and Golden Delicious influence the fruit's susceptibility to amino acid-dependent mutants ofPenicillium expansum. Differences among these varieties in the levels of several vitamins, or of the purines, adenine, or hypoxanthine, do not alter susceptibility. The growth in vitro of 7 arginine-requiring mutants at 1×10^–4 M arginine and the decay they cause in apples were directly correlated.     

Divinyl Sulfone as a Crosslinking Reagent for Oligomeric Proteins

The kinetics of the nucleophilic addition reactions of divinyl sulfone to amino groups of glycine and model proteins was studied in aqueous solution at 30°C. The rate constants for glycine, bovine serum albumin, and ₁-casein were (4.84 ± 0.58) × 10^–1, (2.97 ± 0.31) × 10^–2, and (2.38 ± 0.49) × 10^–2 M^–1 s^–1, respectively. Divinyl sulfone was proposed as a crosslinking reagent for the qualitative detection of protein association in solution. The crosslinking capacity of divinyl sulfone was compared to that of 1,3,5-triacryloylhexahydro-s-triazine.     

Lack of excitatory amino acid-induced effects on calcium fluxes measured with45Ca2+ in rat cerebral cortex synaptosomes

Ca²⁺ uptake was measured in purified rat cerebral cortex synaptosomes (P₃ pellets) using⁴⁵Ca²⁺ as a tracer. Ca²⁺ influx increased in time, and with an increase in external K⁺ concentration and temperature. The net (external K⁺-induced, depolarization-dependent) uptake follows a two-component course. The exponential term, due to the opening of voltage-operated calcium channels (VOC), has a rate constant which increases with an increase in the depolarization level (1.04 versus 0.54 nmol/s/mg protein for 50 mM—versus 15 mM [K⁺]-dependent net influx). The linear term, due to the Na⁺/Ca²⁺ exchange system, has a similar rate constant at all depolarization levels (0.16+/–0.05 and 0.11+/–0.02 nmol/s/mg protein). Excitatory amino acids (glutamate, kainate and n-methyl-d-aspartate-NMDA-) were tested on this preparation at doses ranging between 5×10^–5 M and 5×10^–3M and at multiple incubation times, under resting conditions and under two depolarizing conditions (partial depolarization: 15 mM external K⁺ and maximal depolarization: 50 mM external K⁺). NMDA was also tested in the absence of Mg²⁺. No effect was detectable under any of these experimental conditions. Hypotheses to interpret these data are discussed. Further studies on other preparations are needed in order to directly investigate the presynaptic effects of excitatory amino acids.