Geomorphology and community structure of Middle Reef, central Great Barrier Reef, Australia: an inner-shelf turbid zone reef subject to episodic mortality events

Middle Reef is an inshore turbid zone reef located 4 km offshore from Townsville, Queensland, Australia. The reef consists of four current-aligned, interconnected reef patches that have reached sea level and formed reef flats. It is regularly exposed to high turbidity (up to 50 mg l⁻¹) generated by wave-driven sediment resuspension or by episodic flood plumes. Middle Reef has a high mean hard coral cover (>39%), relatively low mean macro-algal cover (<15%) and a coral community comprising at least 81 hard coral species. Cluster analysis differentiated six benthic communities which were mapped onto the geomorphological structure of the reef to reveal a spatially patchy community mosaic that reflects hydrodynamic and sediment redistribution processes. Coral cover data collected annually from windward slope transects since 1993 show that coral cover has increased over the last ~15 years despite a history of episodic mortality events. Although episodic mortality may be interpreted as an indication of marginality, over decadal timescales, Middle Reef has recovered rapidly following mortality events and is clearly a resilient coral reef.     

Effects of physical and biological disturbances on algal turfs in Kaneohe Bay, Hawaii

Disturbance in coral reef environments commonly results in an algal community dominated by highly productive, small filamentous forms and cyanobacteria, collectively known as algal turf. Research on the types of disturbance responsible for this community structure has concentrated mainly on biological disturbance in the form of grazing, although physical and other forms of biological disturbances may be important in many coral reef areas. On the reef flat in Kaneohe Bay, Oahu, Hawaii, algal turfs grow primarily upon coral rubble that tumbles with passing swells. We manipulated the frequency of rubble tumbling in field experiments to mimic the effects of physical disturbance by abrasion and light reduction on algal biomass, canopy height, and community structure. Treatments approximated a gradient of disturbance intensities and durations that occur on the reef flat. Although sea urchins and herbivorous fishes are not widespread and abundant on the reef flat, biological disturbances to algal turf communities in the form of herbivory by small crabs and abrasion by tough macroalgae contributed significantly to the variation in algal turf biomass. Within all experiments increasing disturbance significantly reduced algal biomass and canopy heights and the community structure shifted to more disturbance-tolerant algal forms. This study shows that the chronic physical disturbances from water motion and biological disturbances other than grazing from large herbivores can control algal communities in coral reef environments.     

Linking Demographic Processes of Juvenile Corals to Benthic Recovery Trajectories in Two Common Reef Habitats

Tropical reefs are dynamic ecosystems that host diverse coral assemblages with different life-history strategies. Here, we quantified how juvenile (<50 mm) coral demographics influenced benthic coral structure in reef flat and reef slope habitats on the southern Great Barrier Reef, Australia. Permanent plots and settlement tiles were monitored every six months for three years in each habitat. These environments exhibited profound differences: the reef slope was characterised by 95% less macroalgal cover, and twice the amount of available settlement substrata and rates of coral settlement than the reef flat. Consequently, post-settlement coral survival in the reef slope was substantially higher than that of the reef flat, and resulted in a rapid increase in coral cover from 7 to 31% in 2.5 years. In contrast, coral cover on the reef flat remained low (~10%), whereas macroalgal cover increased from 23 to 45%. A positive stock-recruitment relationship was found in brooding corals in both habitats; however, brooding corals were not directly responsible for the observed changes in coral cover. Rather, the rapid increase on the reef slope resulted from high abundances of broadcast spawning Acropora recruits. Incorporating our results into transition matrix models demonstrated that most corals escape mortality once they exceed 50 mm, but for smaller corals mortality in brooders was double those of spawners (i.e. acroporids and massive corals). For corals on the reef flat, sensitivity analysis demonstrated that growth and mortality of larger juveniles (21–50 mm) highly influenced population dynamics; whereas the recruitment, growth and mortality of smaller corals (<20 mm) had the highest influence on reef slope population dynamics. Our results provide insight into the population dynamics and recovery trajectories in disparate reef habitats, and highlight the importance of acroporid recruitment in driving rapid increases in coral cover following large-scale perturbation in reef slope environments.     

Sediment suppresses herbivory across a coral reef depth gradient

Sediments are a ubiquitous feature of all coral reefs, yet our understanding of how they affect complex ecological processes on coral reefs is limited. Sediment in algal turfs has been shown to suppress herbivory by coral reef fishes on high-sediment, low-herbivory reef flats. Here, we investigate the role of sediment in suppressing herbivory across a depth gradient (reef base, crest and flat) by observing fish feeding following benthic sediment reductions. We found that sediment suppresses herbivory across all reef zones. Even slight reductions on the reef crest, which has 35 times less sediment than the reef flat, resulted in over 1800 more herbivore bites (h⁻¹ m⁻²). The Acanthuridae (surgeonfishes) were responsible for over 80 per cent of all bites observed, and on the reef crest and flat took over 1500 more bites (h⁻¹ m⁻²) when sediment load was reduced. These findings highlight the role of natural sediment loads in shaping coral reef herbivory and suggest that changes in benthic sediment loads could directly impair reef resilience.     

Spatial and temporal variations in turbidity on two inshore turbid reefs on the Great Barrier Reef, Australia

This study describes the natural turbidity regimes at two inshore turbid reefs on the central Great Barrier Reef where wind-driven waves are the main agent of sediment resuspension. Many corals on inshore turbid reefs have adapted to high and fluctuating turbidity, however, anthropogenic activities such as dredging are speculated to produce larger and more prolonged turbidity events that may exceed the environmental tolerance and adaptive capacity of corals on these reefs. Natural turbidity regimes must be described and understood to determine whether and when coral communities on inshore turbid reefs are at risk from anthropogenically elevated turbidity, but at present few baseline studies exist. Here, we present turbidity data from (a) Middle Reef, a semi-protected reef located between Magnetic Island and Townsville and (b) Paluma Shoals, a reef exposed to higher energy wind and waves located in Halifax Bay. Instruments were deployed on both reefs for 16 days to measure spatial and temporal variations in turbidity and its driving forces (waves, currents, tides). Locally driven wind waves were the key driver of turbidity, but the strength of the relationship was dependent on wave exposure. Turbidity regimes thus vary markedly over individual reefs and this is reflected in community assemblage distributions, with a high abundance of heterotrophic corals (e.g. Goniopora) in reef habitats subjected to large fluctuations in turbidity (>100 NTU). A turbidity model developed using local wind speed data explained up to 75 % and up to 46 % of the variance in turbidity at Paluma Shoals and Middle Reef, respectively. Although the model was based on a brief two-week observational period, it reliably predicted variations in 24-h averaged turbidity and identified periods when turbidity rose above ambient baseline levels, offering reef managers insights into turbidity responses to modified climate and coastal sediment delivery regimes.     

Chlorophyll a and turbidity patterns over coral reefs systems of La Parguera Natural Reserve, Puerto Rico

Studies of temporal and spatial changes in phytoplankton biomass and turbidity provide essential information on coral reef ecosystem function and health. Fluctuation of phytoplankton biomass responds to several factors including nutrient inputs, both anthropogenic and natural, while turbidity is mostly affected by sediment resuspension or transport from terrestrial systems. These parameters can be used as sentinels of significant environmental factors "modifying" coral reef systems. A chlorophyll a concentration (Chl a) and turbidity (Turb) in situ logger was installed at 10 stations from June 4 to July 7, 2003 in La Parguera Natural Reserve (Southwestern Puerto Rico) to assess short-term temporal and geographic variation in patterns of phytoplankton biomass and turbidity at pre-selected sites as part of an interdisciplinary long-term study. Average station Ch1 a variation was 0.17-1.12 microg 1(-1) and 0.2-23.4 NTU for Turb. Results indicate that the western near-coastal stations had higher levels of Turb and Ch1 a. The easternmost mid shelf station, Romero reef, was similar to coastal stations probably due to nutrient and suspended sediment inputs from a source external to our study area to the east, Guánica Bay. Comparisons between different sampling days indicate significant differences between days for most stations suggesting that one-time discrete sampling may not be representative of average water column conditions and illustrate the dynamic nature of coral reef systems. Further work is warranted to assess seasonal changes that integrate short-term (daily) variability in both Turb and Ch1 a.     

Implications of reef ecosystem change for the stability and maintenance of coral reef islands

Coral reef islands are among the most vulnerable environments on Earth to climate change because they are low lying and largely constructed from unconsolidated sediments that can be readily reworked by waves and currents. These sediments derive entirely from surrounding coral reef and reef flat environments and are thus highly sensitive to ecological transitions that may modify reef community composition and productivity. How such modifications – driven by anthropogenic disturbances and on‐going and projected climatic and environmental change – will impact reef island sediment supply and geomorphic stability remains a critical but poorly resolved question. Here, we review the unique ecological–geomorphological linkages that underpin this question and, using different scenarios of environmental change for which reef sediment production responses can be projected, explore the likely resilience of different island types. In general, sand‐dominated islands are likely to be less resilient than those dominated by rubble grade material. However, because different islands typically have different dominant sediment constituents (usually either coral, benthic foraminifera or Halimeda) and because these respond differently to individual ecological disturbances, island resilience is likely to be highly variable. Islands composed of coral sands are likely to undergo major morphological change under most near‐future ecological change scenarios, while those dominated by Halimeda may be more resilient. Islands composed predominantly of benthic foraminifera (a common state through the Pacific region) are likely to exhibit varying degrees of resilience depending upon the precise combination of ecological disturbances faced. The study demonstrates the critical need for further research bridging the ecological–geomorphological divide to understand: (1) sediment production responses to different ecological and environmental change scenarios; and (2) dependant landform vulnerability.     

Controls on reef development and the terrigenous-carbonate interface on a shallow shelf,Nicaragua (Central America)

Marine geology and physical oceanographic data collected during two field projects (∼4 months) on the Caribbean shelf of Nicaragua indicate a surprising dominance of carbonate deposition and reef growth on a shelf that is receiving an abnormally large volume of terrigenous sediments. High rainfall rates (∼400–500 cm/year), coupled with a warm tropical climate, encourage rapid denudation of the country’s central volcanic highland and transport of large volumes of terrigenous sediment and fresh water to the coast. Estimates suggest that three times more fresh water and fifteen times more sediment are introduced per unit length of coastline than on the east coast of the United States. Distribution of the terrigenous facies, development of carbonate sediment suites, and the location and quality of viable reefs are strongly controlled by the dynamic interaction near the coasts of highly turbid fresh to brackish water effluents from thirteen rivers with clear marine waters of the shelf. Oceanic water from the central Caribbean drift current intersects the shelf and moves slowely in a dominant northwest direction toward the Yucatan Channel. A sluggish secondary gyre moves to the south toward Costa Rica. In contrast, the turbid coastal water is deflected to the south in response to density gradients, surface water slopes, and momentum supplied by the steady northeast trade winds. A distinct two-layered flow is commonly present in the sediment-rich coastal boundary zone, which is typically 10–20 km wide. The low-salinity upper layer is frictionally uncoupled from the ambient shelf water and therefore can expand out of the normally coherent coastal boundary zone during periods of abnormal flooding or times when instability is introduced into the northeast trades. Reef distribution, abruptness of the terrigenous-carbonate interface, and general shelf morphology reflect the long-term dynamic structure of the shelf waters. A smooth-bottomed ramp of siliciclastic sands to silts and clays mantles the inner shelf floor in a linear belt paralleling the coast. This belt generally corresponds to the western flank of the coastal boundary zone. Occurrence of reefs is generally confined to areas outside this zone. Terrigenous clays and silts of the inner shelf are abruptly (<20 km from the coast) replaced byHalimeda-rich sediment of the middle and outer shelf. Within the carbonate facies belt, reef complexes thrive as small, isolated masses; large, reef-capped platforms; reef fringes around islands; and shelfedge structures with vertical relief that can exceed 25 m. In general, the frequency and proliferation of reefs increase away from the turbid coastal boundary layer and toward the cooler and saltier water that upwells at the shelf margin.     

Numerical modeling of the impact of sea-level rise on fringing coral reef hydrodynamics and sediment transport

Most climate projections suggest that sea level may rise on the order of 0.5–1.0 m by 2100; it is not clear, however, how fluid flow and sediment dynamics on exposed fringing reefs might change in response to this rapid sea-level rise. Coupled hydrodynamic and sediment-transport numerical modeling is consistent with recent published results that suggest that an increase in water depth on the order of 0.5–1.0 m on a 1–2 m deep exposed fringing reef flat would result in larger significant wave heights and setup, further elevating water depths on the reef flat. Larger waves would generate higher near-bed shear stresses, which, in turn, would result in an increase in both the size and the quantity of sediment that can be resuspended from the seabed or eroded from adjacent coastal plain deposits. Greater wave- and wind-driven currents would develop with increasing water depth, increasing the alongshore and offshore flux of water and sediment from the inner reef flat to the outer reef flat and fore reef where coral growth is typically greatest. Sediment residence time on the fringing reef flat was modeled to decrease exponentially with increasing sea-level rise as the magnitude of sea-level rise approached the mean water depth over the reef flat. The model results presented here suggest that a 0.5–1.0 m rise in sea level will likely increase coastal erosion, mixing and circulation, the amount of sediment resuspended, and the duration of high turbidity on exposed reef flats, resulting in decreased light availability for photosynthesis, increased sediment-induced stress on the reef ecosystem, and potentially affecting a number of other ecological processes.     

Sedimentation modified by wind induced resuspension in a shallow tropical lagoon (Cote d'Ivoire)

In shallow environments, under certain conditions of fetch, wind velocity, bathymetry and bottom characteristics, resuspension can be generated by wind induced waves. In the tropical Ebrié lagoon, austral trade winds are dominant almost all year long, and their velocity shows a marked diel pattern with maximum speed between noon and midnight. Only austral trade winds with a speed >3 m s⁻¹ allow particle resuspension which is effective for depths<1.5 m. In these areas, significantly higher values of chlorophyll biomass and mineral seston are noted during the windy sequences. Granulometric and mineralogical analyses showed that only the surficial sediment (0–3 cm) was involved in resuspension. This process induces several effects: 1) an increase of the suspended matter concentration in the water and thus a light attenuation due to a higher turbidity, 2) a redistribution in the whole water column of nutrients from the pore water and 3) a removal of the finer fractions from the superficial sediment. On the contrary, for depths>1.5 m, particle sinking is permanent in depressions which are spontaneously transformed into anoxic systems. At the lagoon scale, sedimentation is significantly modified by wind induced resuspension. According to the bathymetry and the distance from a river, three sedimentary facies are recognized. Their grain size distributions are parabolic in areas where resuspension occurs, logarithmic in areas where no resuspension is possible and hyperbolic in the hollows and the main channels. Finally, a large part of the allochthonous inputs (from drainage and rivers) and autochthonous pelagic production is trapped into the Ebrié lagoon and less than 10% of the particles entering the lagoon are exported toward the Atlantic Ocean.     

Reduced Diversity and High Sponge Abundance on a Sedimented Indo-Pacific Reef System: Implications for Future Changes in Environmental Quality

Although coral reef health across the globe is declining as a result of anthropogenic impacts, relatively little is known of how environmental variability influences reef organisms other than corals and fish. Sponges are an important component of coral reef fauna that perform many important functional roles and changes in their abundance and diversity as a result of environmental change has the potential to affect overall reef ecosystem functioning. In this study, we examined patterns of sponge biodiversity and abundance across a range of environments to assess the potential key drivers of differences in benthic community structure. We found that sponge assemblages were significantly different across the study sites, but were dominated by one species Lamellodysidea herbacea (42% of all sponges patches recorded) and that the differential rate of sediment deposition was the most important variable driving differences in abundance patterns. Lamellodysidea herbacea abundance was positively associated with sedimentation rates, while total sponge abundance excluding Lamellodysidea herbacea was negatively associated with rates of sedimentation. Overall variation in sponge assemblage composition was correlated with a number of variables although each variable explained only a small amount of the overall variation. Although sponge abundance remained similar across environments, diversity was negatively affected by sedimentation, with the most sedimented sites being dominated by a single sponge species. Our study shows how some sponge species are able to tolerate high levels of sediment and that any transition of coral reefs to more sedimented states may result in a shift to a low diversity sponge dominated system, which is likely to have subsequent effects on ecosystem functioning.     

Environmental control of phytoplankton productivity in turbulent turbid systems

Factors affecting phytoplankton productivity are analysed in turbid systems, such as shallow lakes and rivers. When resuspension from the sediment or loading from the catchment significantly increases inorganic (non-algal) turbidity and hence light attenuation potentials for high production are not realised. Energy available for phytoplankton growth is strongly regulated by underwater light availability which depends on the critical mixing depth, fluctuating light intensities and algal circulation patterns. Higher production rates in shallow waters are often compensated by greater algal respiration due to higher water temperatures when compared to deeper lakes.Total daily integral production of turbulent, turbid environments can be predicted from a combination of easily measured variables such as maximum photosynthetic rates, algal biomass, surface irradiance and some measure of underwater light attenuation.     

Sedimentation on three caribbean atolls: Glovers reef,lighthouse reef and turneffe Islands,belize

Summary The chief mode of carbonate sedimentation on the Belizean atolls Glovers Reef, Lighthouse Reef and Turneffe Islands is the accumulation of organically-derived particles. Variations in the distribution of the composition and grain-sizes of surface sediments, collected along transects across the atolls, are environmentally controlled. Two major sediment types may be distinguished. (1) Reef and fore reef sediments are dominated by fragments of coral, coralline algae andHalimeda. Mean grain-sizes range from 1–2 mm. (2) Back reef sediments contain more mollusk fragments, more fine-grained sediment (<125 μm) and appear to have fewerHalimeda fragments. In addition, sediments from inner platforms and shallow lagoonal parts of Glovers and Lighthouse Reefs comprise non-skeletal grains, namely fecal pellets. Sediments from lagoonal patch reefs may contain up to 20% coral fragments. Mean grain-sizes range from 0.1–1 mm and are finest on the inner platform and lagoon floor of the back reef environment. Within the reef and fore reef environments, it is not possible to distinguish sub-environments on the basis of textural and compositional differences of the sediments. Sediments from patch reefs contrast with those from back reef lagoons and inner platforms and are similar in terms of grain-sizes and compositions to reef and fore reef surface sediments. Non-skeletal grains forming in shallow parts of the back reef in Glovers and Lighthouse Reefs are interpreted to be indurated by interstitial precipitation of calcium carbonate from warm, supersaturated water flushing the sediment. The lack of hardened non-skeletal particles in the back reef sediments of Turneffe Islands is most probably due to the abundance of muddy, organic-rich sediment in the well-protected lagoon. Fine sediment is less permeable and organic films prevent cement overgrowth on particles.     

Adaptation to reef habitats through selection on the coral animal and its associated microbiome

Spatially adjacent habitats on coral reefs can represent highly distinct environments, often harbouring different coral communities. Yet, certain coral species thrive across divergent environments. It is unknown whether the forces of selection are sufficiently strong to overcome the counteracting effects of the typically high gene flow over short distances, and for local adaptation to occur. We screened the coral genome (using restriction site‐associated sequencing) and characterized both the dinoflagellate photosymbiont‐ and tissue‐associated prokaryote microbiomes (using metabarcoding) of a reef flat and slope population of the reef‐building coral, Pocillopora damicornis, at two locations on Heron Island in the southern Great Barrier Reef. Reef flat and slope populations were separated by <100 m horizontally and ~5 m vertically, and the two study locations were separated by ~1 km. For the coral host, genetic divergence between habitats was much greater than between locations, suggesting limited gene flow between the flat and slope populations. Consistent with environmental selection, outlier loci primarily belonged to the conserved, minimal cellular stress response, likely reflecting adaptation to the different temperature and irradiance regimes on the reef flat and slope. The prokaryote community differed across both habitat and, to a lesser extent, location, whereas the dinoflagellate photosymbionts differed by habitat but not location. The observed intraspecific diversity associated with divergent habitats supports that environmental adaptation involves multiple members of the coral holobiont. Adaptive alleles or microbial associations present in coral populations from the environmentally variable reef flat may provide a source of adaptive variation for assisted evolution approaches, through assisted gene flow, artificial cross‐breeding or probiotic inoculations, with the aim to increase climate resilience in the slope populations.     

Conventional tagging and acoustic telemetry of a small surgeonfish, <Emphasis Type="Italic">Zebrasoma flavescens</Emphasis>, in a structurally complex coral reef environment

Passive acoustic telemetry and conventional tag/re-sight techniques were used to study daily movement patterns of adult yellow tang, Zebrasoma flavescens, over a period of months. Range testing and visual observations revealed the limitations of using small acoustic transmitters to monitor movements of small coral reef fish in a topographically complex and noisy coral reef environment. Visual observations of conventionally tagged and albino fish suggest individuals return each day to forage over the same few hundred m² of shallow, turf algae dominated boulder and reef flat habitat for periods of at least weeks to months. Acoustic telemetry data suggest lower frequency of repeated use of daytime foraging, nighttime refuge and sunset spawning sites. However, integration of observation and acoustic telemetry data revealed that many fish were not detected while they were within the empirically tested range of the receivers. These observations indicate that data from passive acoustic telemetry can underestimate the frequency and duration of repeated use of specific areas. Yellow tang adults made daily crepuscular migrations of up to 600 m between foraging and spawning or sheltering sites at consistent times relative to sunset and sunrise. While there was high individual variability in migration distance, almost all individuals moved in the same direction (from south to north) at sunset. This study provided valuable information for evaluating ongoing fishery management efforts using marine protected areas in Hawaii.     

Long-term coral community records from Lugger Shoal on the terrigenous inner-shelf of the central Great Barrier Reef,Australia

Long-term (millennial timescale) records of coral community structure can be developed from the analysis of corals preserved in radiometrically dated reef cores. Here, we present such a record (based on six cores) from Lugger Shoal, a turbid zone, nearshore reef on the inner-shelf of the central Great Barrier Reef. Lugger Shoal initiated growth ~800 cal yBP. It is constructed of large in situ Porites bommies, between which a framework of coral rubble (dominated by Acropora pulchra, Montipora mollis, Galaxea fascicularis and Cyphastrea serailia) has accumulated. Reef accretion occurred under conditions of net long-term fine-grained, terrigenous sediment accumulation, and with a coral community dominated throughout by a consistent, but low diversity, suite of coral taxa. This dataset supports recent suggestions that nearshore coral communities that establish themselves under conditions that are already close to the thresholds for coral survival may be resilient to water quality deteriorations associated with human activities.     

Spatial pattern of coral diversity in Luhuitou fringing reef, Sanya, China

84 quadrats from 5 vertical transects of Luhuitou fringing reef are investigated in detail by using video-quadrat and indoor-interpretation methods. The results show that (1) the reef consists of 69 species of hermatypic corals belonging to 24 genera and 13 families which are unevenly distributed in abundance. (2) Among all the corals, Porites lutea is the most dominant species with importance value percentage up to 36.62%; Porites and Acropora are dominant genera with importance value percentages 43.85% and 22.88%, respectively. (3) There exist distinct spatial differences in coral communities. Both the coral covers and coral diversity indices on the northeastern transects are higher than those on the central and southern transects. (4) Coral communities also show remarkable zonal characteristics with less coral species occurring on reef flat than on reef slope. The importance value percentage of the sole dominant coral genus, Porites, is over 50%, while on the reef slope, the importance value percentages are 28.33% for the first dominant genus Acropora and 26.71% for the second dominant genus Porites. Our further analysis suggests that the spatial and zonal differences of coral diversity pattern are correlated with both natural environmental changes and human activities. The shallow water reef flat is frequently exposed at low tide and it receives more anthropogenic influences (including dredging and trampling) than the deep water reef slope. Thus, the coral community on the reef flat is not as well developed as that on reef slope. The relatively poor coral covers and coral diversity indices on the central and southern transects are closely related to heavy human activities around these sites such as aquaculture, fishing and coastal sewage drainage. Therefore, the impact of human activities must be taken into account in developing strategies for the protection of this coral reef.     

Spatial pattern of coral diversity in Luhuitou fringing reef, Sanya, China

84 quadrats from 5 vertical transects of Luhuitou fringing reef are investigated in detail by using video-quadrat and indoor-interpretation methods. The results show that (1) the reef consists of 69 species of hermatypic corals belonging to 24 genera and 13 families which are unevenly distributed in abundance. (2) Among all the corals, Porites lutea is the most dominant species with importance value percentage up to 36.62%; Porites and Acropora are dominant genera with importance value percentages 43.85% and 22.88%, respectively. (3) There exist distinct spatial differences in coral communities. Both the coral covers and coral diversity indices on the northeastern transects are higher than those on the central and southern transects. (4) Coral communities also show remarkable zonal characteristics with less coral species occurring on reef flat than on reef slope. The importance value percentage of the sole dominant coral genus, Porites, is over 50%, while on the reef slope, the importance value percentages are 28.33% for the first dominant genus Acropora and 26.71% for the second dominant genus Porites. Our further analysis suggests that the spatial and zonal differences of coral diversity pattern are correlated with both natural environmental changes and human activities. The shallow water reef flat is frequently exposed at low tide and it receives more anthropogenic influences (including dredging and trampling) than the deep water reef slope. Thus, the coral community on the reef flat is not as well developed as that on reef slope. The relatively poor coral covers and coral diversity indices on the central and southern transects are closely related to heavy human activities around these sites such as aquaculture, fishing and coastal sewage drainage. Therefore, the impact of human activities must be taken into account in developing strategies for the protection of this coral reef.