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1.
Questions: Can probability of occurrence and dominance be accurately estimated for six important conifer species with varying range sizes? Does range size impact the accuracy of species probability of occurrence models? Is species predicted probability of occurrence significantly related to observed dominance? Location: Pacific Northwest region, North America (60°–40°N, 140°–110°W). Methods: This study develops near range‐wide predictive distribution maps for six important conifer species (Pseudotsuga menziesii, Tsuga heterophylla, Pinus contorta, Thuja plicata, Larix occidentalis, and Picea glauca) using forest inventory data collected across the United States and Canada. Species model accuracies are compared with range size using a rank scoring system. A suite of climate and topographic predictor variables are used to investigate environmental constraints that limit species range and quantify relationships between species predicted probability of occurrence and dominance at both plot and landscape scales. Results: Evaluation statistics revealed significant and accurate probability of occurrence models were developed for all six species. Based on ranked evaluation statistics, Tsuga heterophylla had highest overall model accuracy (statistic rank score=5) and Pinus contorta the lowest (statistic rank score=17). Across species, ranked evaluation statistics also revealed a pattern of decreasing model accuracy with increasing range size. At plot level, correlations between dominance and probability of occurrence were weakly positive for all species with only half of the species having statistically significant correlations. Pseudotsuga menziesii had the highest correlation (r=0.36, P<0.001) and Thuja plicata lowest (r=0.038, P=0.799). At the 50‐km scale, correlations between dominance and probability of occurrence improved for all species except Pinus contorta. Pseudotsuga menziesii displayed the highest correlation (r=0.68, P<0.001) and Thuja plicata the lowest (r=0.07, P>0.709). Conclusions: Species probability of occurrence model accuracy decreased with increasing range size. The strength and significance of correlations between probability of occurrence and dominance varied considerably by species and across spatial scales. Apart from Pseudotsuga menziesii and L. occidentalis, the results suggest that probability of occurrence is not a consistently reliable surrogate for species dominance in Pacific Northwest forests. We demonstrate how the degree of correlation between species occurrence and dominance can be used as an indicator of how well predictions of occurrence characterize the optimal niche of a species.  相似文献   

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Patterns of moss and liverwort species diversity — species richness and species turnover (β‐diversity) — in three conifer‐dominated boreal forest stands of northern Alberta, Canada are described. We examined the relationship between bryophyte species diversity and micro‐environment at two sample grains, the microsite — substrate types for moss colonization: logs, stumps, tree bases, undisturbed patches of forest floor (dominated by feather moss species), and disturbed patches of forest floor — and the mesosite (25 m × 25 m plots). Microsite type and properties (e.g. decay class, hardwood vs softwood, pH) were the principal predictors of bryophyte species diversity and not micro‐environment variation among mesosites. Microsite type was the strongest predictor of microsite species richness and β‐diversity was higher among microsites and types and within microsites than among mesosites or stands. Microsite properties were significant predictors of species richness for all microsite types. Log and stump decay classes, influenced also by hardwood vs softwood predicted species richness of woody microsite types and soil pH and moisture predicted species richness of forest floor microsites. β‐diversity was highest for tree bases and disturbed patches of forest floor and lowest for logs. Mesosite β‐diversity was lower than that among microsites, and mesosite species richness was not well explained by measured environmental parameters. Results suggest that in conifer‐dominated boreal stands, species richness of microsites is only negligibly influenced by within‐stand variation at the mesosite grain and that substrate characteristics are the most important predictors of bryophyte species diversity in this ecosystem.  相似文献   

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Axioms developed from island biogeography theory (i.e. species–area relationships, effects of fragmentation and isolation) are central to the development of conservation strategy. Within this context, the 'extinction debt' hypothesis brings into question an often assumed relationship between species richness and present-day spatial habitat structure (i.e. extent, fragmentation), suggesting instead that the richness and composition of biological communities may lag behind spatial changes in habitat. We examined evidence for an extinction debt among epiphytic lichens, a highly diverse biological group of significant conservation concern. Using sites in Scotland, we compared epiphyte species richness in smaller-scale habitat units (aspen stands) to larger-scale woodland structure (extent and fragmentation) measured at two spatial scales (1 km2 and 4 km2) and for two timeframes, modern (1990s to 2000s) and historic (1860s to 1880s). Species richness was positively related to woodland extent and negatively related to woodland fragmentation; however, richness was explained better by historic woodland structure at a 1-km2 scale, than by modern woodland structure. The results indicate: (1) a coupling of stand-scale epiphyte assembly and dynamics of the wider woodland ecosystem, and (2) a significant lag in the response of epiphyte species richness to habitat spatial structure. However, the effect of spatial habitat structure is different between species groups with contrasting traits. The effect of decreasing woodland extent on epiphyte richness is generally more severe for microlichens (comprising a greater number of rare and specialist species) than the more generalist macrolichens.  相似文献   

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Ecological studies aim to analyse the variation of disease risk in relation to exposure variables that are measured at an area unit level. In practice it is rarely possible to use the exposure variables themselves, either because the corresponding data are not available or because the causes of the disease are not fully understood. It is therefore quite common to use crude proxies of the real exposure to the disease in question. These proxies are rarely able to explain the disease variation and hence additional area level random effects are introduced to account for the residual variation. In this paper we investigate the possibility to model the effect of ecological covariates non‐parametrically, with and without additional random effects for the residual spatial variation. We illustrate the issues arising through analyses of simulated and real data on larynx cancer mortality in Germany, during the years of 1986 to 1990, where we use the corresponding lung cancer rates as a proxy for smoking consumption.  相似文献   

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Questions: Can a statistical model be designed to represent more directly the nature of organismal response to multiple interacting factors? Can multiplicative kernel smoothers be used for this purpose? What advantages does this approach have over more traditional habitat modelling methods? Methods: Non‐parametric multiplicative regression (NPMR) was developed from the premises that: the response variable has a minimum of zero and a physiologically‐determined maximum, species respond simultaneously to multiple ecological factors, the response to any one factor is conditioned by the values of other factors, and that if any of the factors is intolerable then the response is zero. Key features of NPMR are interactive effects of predictors, no need to specify an overall model form in advance, and built‐in controls on overfitting. The effectiveness of the method is demonstrated with simulated and real data sets. Results: Empirical and theoretical relationships of species response to multiple interacting predictors can be represented effectively by multiplicative kernel smoothers. NPMR allows us to abandon simplistic assumptions about overall model form, while embracing the ecological truism that habitat factors interact.  相似文献   

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  总被引:2,自引:0,他引:2  
Aim Lichen epiphytes are important for biodiversity conservation and are also widely applied as environmental indicators. However, biogeographical and ecological knowledge underpinning lichen epiphyte conservation, and the use of lichens as indicators, is based primarily on a limited range of ‘macrolichen’ species. Wider trends in epiphyte biodiversity remain largely unexplored. This paper examines the community structure of lichen epiphytes on aspen (Populus tremula L.) in Scotland, including species across all functional groups and comprising, therefore, taxonomically difficult ‘microlichens’. Location Northern Britain (Scotland). Methods Epiphytes were sampled from 12 sites throughout Scotland and examined at two scales: between and within aspen stands. Species were classified into contrasting functional groups and ordination by detrended correspondence analysis was used to summarize community structure. Results Within aspen stands (between trees) epiphyte communities showed successional patterns related to tree age. These successional patterns changed predictably for stands aligned along a climatic gradient (between stands). Main conclusions A dual climatic–successional trend in epiphyte community structure is presented. Large‐scale trends in epiphyte diversity are explained as the local response of species with contrasting functional traits to climate and autogenic succession. Turnover of functional groups between stands is positively related to β‐diversity, and ecological limits to the frequency of contrasting functional groups are presented. Accordingly, the study and application of lichen species with similar functional traits may inadequately represent patterns of biodiversity. This prompts criticism of the currently accepted conservation strategy, i.e. (1) an emphasis in the conservation literature on ‘macrolichen’ species with similar ecologies and (2) the application of lichen indices over climatically variable geographical areas.  相似文献   

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Aim To quantify the interaction between climate and woodland continuity in determining the bioclimatic response of lichen epiphytes. Location Northern Britain (Scotland). Methods Indicator‐species analysis was used to pre‐select lichen epiphytes along parallel gradients in climate and the extent of old‐growth woodland. Nonparametric multiplicative regression was used to describe in a predictive model the individualistic response of selected species, which were projected based on climate‐change scenarios and contrasting patterns of simulated woodland loss or gain. Species with a similar response were grouped using a novel application of cluster analysis to summarize the potentially huge number of projected outcomes. Projected patterns of occurrence under climate‐change scenarios were examined for different levels of old‐growth woodland extent. Results Forty‐two lichen species were statistically significant indicator species in oceanic woodlands, and old‐growth indicators under suboptimal climatic conditions. Responses to climate‐change scenarios were contrasting, with one group comprising species projected to increase in extent in response to climate warming, and other response groups projected to decrease in occurrence, possibly in response to shifting rainfall patterns. The occurrence of all response groups had a positive relationship with old‐growth woodland extent. Main conclusions An ‘oceanic’ biogeographical group of epiphytes identified using the baseline climatic and present‐day woodland setting comprised species with a cyanobacterial photobiont or tropical phytogeographical affinities. However, within this group the individual species responses to climate‐change scenarios were contrasting. Additionally, group responses may be poorly matched with simple ecological traits. However, the studied interaction between climate and habitat continuity suggests that the impact of climate change might be offset for certain lichen epiphytes by appropriate management of woodland resources, for example, expansion of native woodland around remnant old‐growth stands.  相似文献   

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We consider lifetime data involving pairs of study individuals with more than one possible cause of failure for each individual. Non-parametric estimation of cause-specific distribution functions is considered under independent censoring. Properties of the estimators are discussed and an illustration of their application is given.  相似文献   

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The ROC (receiver operating characteristic) curve is the most commonly used statistical tool for describing the discriminatory accuracy of a diagnostic test. Classical estimation of the ROC curve relies on data from a simple random sample from the target population. In practice, estimation is often complicated due to not all subjects undergoing a definitive assessment of disease status (verification). Estimation of the ROC curve based on data only from subjects with verified disease status may be badly biased. In this work we investigate the properties of the doubly robust (DR) method for estimating the ROC curve under verification bias originally developed by Rotnitzky, Faraggi and Schisterman (2006) for estimating the area under the ROC curve. The DR method can be applied for continuous scaled tests and allows for a non‐ignorable process of selection to verification. We develop the estimator's asymptotic distribution and examine its finite sample properties via a simulation study. We exemplify the DR procedure for estimation of ROC curves with data collected on patients undergoing electron beam computer tomography, a diagnostic test for calcification of the arteries.  相似文献   

11.
Question: Could we better estimate plot species richness by asking several botanists to survey the same plots and using non‐parametric estimators of richness? Location: Two French deciduous forests. Methods: Using replicated, independent censuses made by 11 professional botanists on the same eight 100‐m2 forest plots, the relative performance of different richness estimators (Lincoln‐Petersen, Jackknife 1&2, Chao 1&2, Bootstrap, Chao Mth, Darroch) and the variation in their performance with the number of botanists involved (teams with two to eight botanists) were investigated. The sensitivity of these estimators to the presence of misidentifications in the data was also assessed. Results: When misidentifications are removed, Chao Mth estimators converged fastest to true richness, but none of the tested estimators correctly accounted for differences in exhaustiveness between the teams. Finally, all estimators were highly sensitive to misidentifications. Conclusions: Richness estimators are of little help in the presence of misidentifications and are ineffective at removing between‐team discrepancies, thus strongly limiting their usefulness in practice. Methods are presented to show how surveys can be designed to remove misidentifications and limit between‐team discrepancies. A sensible sampling design for 100‐m2 plots in temperate forests would involve triplets of botanists and correcting data with the Chao N1. Pairs of botanists would already significantly improve the richness estimates, but such estimates would still be biased low. However, further research is needed to design new richness estimators that are more robust to observer effects.  相似文献   

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Andrew C. Titman 《Biometrics》2015,71(4):1034-1041
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14.
The study aimed to determine the influence of repeated natural dawn and dusk twilight pulses in entraining the circadian flight activity rhythm of the microchiropteran bat, Hipposideros speoris, free‐running in constant darkness in a natural cave. The bats were exposed to repeated dawn or dusk twilight pulses at eight circadian phases. All bats exposed to dawn twilight pulses were entrained by advancing transients, and the stable entrainment was reached when the onset of activity occurred about 12 h before the lights‐on of the pulses, irrespective of the initial phase at which the bats were exposed to twilight. All bats exposed to dusk twilight pulses, however, were entrained by delaying transients, and the stable entrainment was reached when the onset of activity occurred about 1.6 h after the lights‐on of the pulses. The entrainment caused by dawn and dusk twilight pulses is discussed in the context of the postulated two photoreceptors: the short wavelength sensitive (S) photoreceptors mediating entrainment via dusk twilight, and the medium wavelength sensitive (M) photoreceptors mediating entrainment via dawn twilight.  相似文献   

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In the context of randomized clinical trials, multiplicity arises in many forms. One prominent example is when a key endpoint is measured and analyzed both at baseline and after treatment. It is common to analyze each separately, but more efficient to adjust the post‐treatment comparisons for the baseline values. Adjustment techniques generally treat the covariate (baseline value, in this case) as either nominal or continuous. Either is problematic when applied to an ordinal covariate, the former because it fails to exploit the natural ordering and the latter because it relies on an artifical notion of linear prediction and differences between values. We propose new methods for adjusting for ordinal covariates without having to treat them as nominal or continuous. Specifically, the information‐preserving composite endpoint consists of the pair of values for each patient, one at baseline and one after treatment. Some of these patterns will indicate more improvement than others, yet some pairs of patterns are not comparable. Hence, the ordering is only partial. We develop an approach to testing and deriving estimators of magnitudes of the treatment effect based on comparing each observation in one group to each observation in the other group to which it is comparable. (© 2004 WILEY‐VCH Verlag GmbH & Co. KGaA, Weinheim)  相似文献   

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A conceptually simple two‐dimensional conditional reference curve is described. The curve gives a decision basis for determining whether a bivariate response from an individual is “normal” or “abnormal” when taking into account that a third (conditioning) variable may influence the bivariate response. The reference curve is not only characterized analytically but also by geometric properties that are easily communicated to medical doctors – the users of such curves. The reference curve estimator is completely non‐parametric, so no distributional assumptions are needed about the two‐dimensional response. An example that will serve to motivate and illustrate the reference is the study of the height/weight distribution of 7–8‐year‐old Danish school girls born in 1930, 1950, or 1970.  相似文献   

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Ranking multivariate ordinal data and applying a non‐parametric test is an analytical approach commonly employed to compare treatments. We study three types of ranking and demonstrate how to combine them. The ranking methods rest upon partial orders of the multidimensional measurements or upon the sum of ranks. Since their usage is simple as regards statistical assumptions and technical realization, they are also adapted for health professionals without deep statistical knowledge. Our goal is discussing differences between the approaches and disclosing possible statistical consequences of their usage (© 2009 WILEY‐VCH Verlag GmbH & Co. KGaA, Weinheim)  相似文献   

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