Nitrate assimilation in Candida nitratophila and other yeasts

Nitrate assimilation has been studied in four species of yeasts; Candida nitratophila, Candida utilis, Hansenula anomala and Rhodotorula glutinis. Ammonium-grown cultures of these organisms did not assimilate nitrate but acquired the capacity to do so after a 3 h period of nitrogenstarvation. Ammonium inhibited nitrate assimilation completely in nitrate-grown cultures of R. glutinis. With Candida spp. ammonium and nitrate were assimilated simultaneously but each was assimilated at a lower rate than when either was supplied alone. Nitrogen-starved cultures of C. nitratophila contained enough nitrate reductase activity to sustain high rates of nitrate assimilation. Results indicate that the high levels of nitrate reductase in nitrate-grown cultures of C. nitratophila do not limit nitrate assimilation. Nitrate assimilation appears to be limited by nitrate uptake and/or the supply of reducing equivalents for nitrate reduction in these cultures.     

NITROGEN ASSIMILATION OF AN OCEANIC DIATOM IN NITROGEN-LIMITED CONTINUOUS CULTURE1

The oceanic diatom Thalassiosira pseudonana Hasle and Heimdal (formerly Cyclotella nana) was grown with 12L:12D illumination cycles in nitrogen-limited continuous culture with a mixture of ammonium and nitrate as the N source. Measurements included, at 3 different growth rates (degrees of N limitation), cell concentration, cell carbon, nitrogen, and chlorophyll a contents, cell volume, photosynthetic carbon assimilation vs. irradiance, short-term uptake of ammonium and nitrate vs. their ambient concentrations, and in vitro activities of the assimilatory enzymes nitrate reductase and glutamic dehydrogenase. The various parameters showed either an increase (pattern a) or a decrease (pattern b) with increasing N limitation. Those following pattern a were nitrate reductase activity and the capacity to assimilate nitrate and ammonium. Those following pattern b were glutamic dehydrogenase activity, photosynthetic rate, nitrogen:carbon and chlorophyll a:carbon composition ratios. Results are discussed in terms of the interpretation such measurement for natural phytoplankton and effects of circadian periodicity.     

INFLUENCE OF LOW LIGHT AND A LIGHT: DARK CYCLE ON NO3– UPTAKE,INTRACELLULAR NO3–, AND NITROGEN ISOTOPE FRACTIONATION BY MARINE PHYTOPLANKTON1

The nitrogen isotope enrichment factor (ɛ) of four species of marine phytoplankton grown in batch cultures was determined during growth in continuous saturating light, continuous low light, and a 12:12‐h light:dark cycle, with nitrate as a nitrogen source. The low growth rate that resulted from low irradiance caused an increased accumulation of the intracellular nitrate pool and/or a reduction in cell volume and was correlated to a species‐specific increase in the measured ɛ value, compared with the saturating light conditions. The largest response was in the diatom Thalassiosira weissflogii (Grun.) Fryxell et Hasle, which showed a nearly 3‐fold increase between high and low light conditions (6.2–15.2‰). The smallest response was in T. pseudonana (Hustedt) Hasle et Heimdal, which showed no change in the ɛ value of approximately 5‰ in both high and low light conditions. There was significant but smaller increases in the ɛ value for the diatom T. rotula Meunier (2.7–5.6‰) and the prymnesiophyte Emiliania huxleyi (Lohm.) Hay et Mohler (4.5–9.4‰) between high and low light levels. In the light:dark experiments, all three diatoms but not the prymnesiophyte exhibited an increase in ɛ. This increase was linked to the ability of diatoms to assimilate nitrate at night. The results of the these experiments suggest that the light regime influences the relative uptake, assimilation, and efflux rates of nitrate and results in differences in the expression of the isotope effect by the enzyme nitrate reductase. Therefore, variations in nitrate isotope fractionation in nature can be more accurately interpreted when the light regime and species composition are taken into consideration.     

CARBON SKELETON SOURCES FOR AMMONIUM ASSIMILATION IN N-SUFFICIENT AND N-LIMITED CELLS OF CYANIDIUM CALDARIUM (RHODOPHYTA)1

The possible origin of carbon skeletons for ammonium assimilation in Cyanidium caldarium (Tilden) Geitler was investigated. N-sufficient cells assimilated ammonium at a rate of 182 ± 18 μmol·mL packed cell volume (pcv)^-1· h^-1. Removal of CO₂ or darkening almost immediately prevented ammonium assimilation. N-limited cells in light assimilated ammonium at a rate of 493 ± 45 μmol · mL pcv^-1· h^-1 in the presence of CO₂ and at a lower rate of 168 ± 17 μmol · mL pcv^-1· h^-1 in the absence of CO₂. In darkness they assimilated ammonium at a rate of 293 ± 29 μmol · mL pcv^-1 h^-1 in the presence of CO₂, only 60% of the assimilation rate in light. In the absence of CO₂, ammonium was assimilated at a similar rate of 325 ± 14 μmol · mL pcv^-1· h^-1. Under the latter conditions, however, assimilation was inhibited after 40 min and ceased after 70 min; it resumed upon resupply of CO₂. We suggest that N-sufficient cells of C. caldarium obtain carbon skeletons for ammonium assimilation exclusively by photosynthetic reactions. Upon N-limitation they develop the ability, apparently through derepression or activation of regulatory enzyme system(s), to obtain a consistent quantity of additional carbon skeletons and ATP from mobilization of carbon reserves. This enables the N-limited cell to assimilate ammonium not only in light but also in darkness, and at a higher rate than N-sufficient cells. The fact that ammonium assimilation in light occurs at a higher rate than in darkness suggests that ammonium assimilation in light is the sum of both light and dark ammonium assimilation, which implies separate metabolic reactions for the two processes. These results suggest the existence of two distinct and differently controlled pathways in N-limited cells, but not in N-sufficient cells, through which carbon skeletons for ammonium assimilation originate. An important role for dark CO₂ fixation in dark or light ammonium assimilation is also indicated.     

INTERSPECIFIC VARIATION IN DARK NITROGEN UPTAKE BY DINOFLAGELLATES1

Seven species of marine dinoflagellates were grown in nitrogen-sufficient media under a 12:12 h L:D cycle, and then tested for their ability to take up nitrate and ammonium in the light and in the dark in short-term experiments with ¹⁵N-labelled substrate. The effect of the N substrate chosen, and the effect of sampling time in the L:D cycle, on the relative nitrogen content (the C:N ratio) was investigated at the same time. The physiological extremes in the material were represented by Prorocentrum minimum (Pav.) J. Schiller, which took up and presumably assimilated nitrate equally fast in the light and in the dark, and Gyrodinium aureolum Hulburt, which did not take up nitrate in the dark when in a state of nitrogen sufficiency. A strong coupling between nitrate assimilation and photosynthetic carbon assimilation in the latter species was suggested by the close similarity of the light saturation curves of ¹⁵NO₃^? and ¹⁴CO₂ incorporation, and by a complete blocking of ¹⁵NO₃^? incorporation by 3-(3,4-dichlorophenyl)-1,1-dimethylurea (DCMU). Nitrogen starvation for 24 h induced a capacity in G. aureolum for taking up nitrate in the dark, or in the light in the presence of DCMU, a phenomenon that might be useful for identifying nitrogen limitation in this species in the field. Our study emphasizes the variability of dinoflagellate nitrogen nutrition and illustrates the difficulty of associating mass occurrences of dinoflagellates in nature with any particular nutritional mode.     

Assimilatory nitrate uptake in Pseudomonas fluorescens studied using nitrogen-13

The mechanism of nitrate uptake for assimilation in procaryotes is not known. We used the radioactive isotope, ¹³N as NO₃ ^-, to study this process in a prevalent soil bacterium, Pseudomonas fluorescens. Cultures grown on ammonium sulfate or ammonium nitrate failed to take up labeled nitrate, indicating ammonium repressed synthesis of the assimilatory enzymes. Cultures grown on nitrite or under ammonium limitation had measurable nitrate reductase activity, indicating that the assimilatory enzymes need not be induced by nitrate. In cultures with an active nitrate reductase, the form of ¹³N internally was ammonium and amino acids; the amino acid labeling pattern indicated that ¹³NO₃ ^- was assimilated via glutamine synthetase and glutamate synthase. Cultures grown on tungstate to inactivate the reductase concentrated NO₃ ^- at least sixfold. Chlorate had no effect on nitrate transport or assimilation, nor on reduction in cell-free extracts. Ammonium inhibited nitrate uptake in cells with and without active nitrate reductases, but had no effect on cell-free nitrate reduction, indicating the site of inhibition was nitrate transport into the cytoplasm. Nitrate assimilation in cells grown on nitrate and nitrate uptake into cells grown with tungstate on nitrite both followed Michaelis-Menten kinetics with similar K _mvalues, 7 M. Both azide and cyanide inhibited nitrate assimilation. Our findings suggest that Pseudomonas fluorescens can take up nitrate via active transport and that nitrate assimilation is both inhibited and repressed by ammonium.     

THE DETERMINATION OF THE FAR-RED EFFECT IN MARINE PHYTOPLANKTON1,2

A far-red effect exists in 4 marine phytoplankton species: the diatom Ditylum brightwelli, the coccolithophorid Coccolithus huxleyi, the green flagellate Dunaliella tertiolecta, and the dinoflagellate Pyrocystis lunula. The effect is reversible and is manifested through a change in cell division rate. Cultures of algae which received 30-min far-red (FR) light (750 nm) prior to the dark period were compared to controls which received, no FR. Reversal of the FR effect was studied by exposing experimental cultures to 30 min FR followed by 5-min red (R) light (650 nm) prior to the dark period. Controls received only FR. Cultures were exposed to light at 6 different enumerated wavelengths between 460 and 750 nm. A decrease in division rate runs evident only with light at 750 nm. These results give evidence for the presence of the phytochrome system in these phytoplankton species.     

Growth, uptake, and assimilation of ammonium, nitrate, and urea, by three strains of Karenia brevis grown under low light

Observations of near-bottom populations of Karenia brevis suggest that these cells may derive nutrients from the sediment–water interface. Cells undergoing a metabolic-mediated migration may be in close proximity to enhanced concentrations of nutrients associated with the sediment during at least a fraction of their diel cycle. In this study, the growth, uptake and assimilation rates of ammonium, nitrate, and urea by K. brevis were examined on a diel basis to better understand the potential role of these nutrients in the near-bottom ecology of this species. Three strains of K. brevis, C6, C3, and CCMP 2229, were grown under 12:12 light dark cycle under 30 μmol photons m⁻² s⁻¹ delivered to the surface plain of batch cultures. Nitrogen uptake was evaluated using ¹⁵N tracer techniques and trichloroacetic acid extraction was used to evaluate the quantity of nitrogen (N) assimilated into cell protein. Growth rates ranged from a low of 0.12 divisions day⁻¹ for C6 and C3 grown on nitrate to a high of 0.18 divisions day⁻¹ for C3 grown on urea. Diurnal maximum uptake rates, ρ_max, varied from 0.41 pmol-N cell⁻¹ h⁻¹ for CCMP 2229 grown on nitrate, to 1.29 pmol-N cell⁻¹ h⁻¹ for CCMP 2229 grown on urea. Average nocturnal uptake rates were 29% of diurnal rates for nitrate, 103% of diurnal uptake rates for ammonium and 56% of diurnal uptake rates for urea. Uptake kinetic parameters varied between substrates, between strains and between day and night measurements. Highest maximum uptake rates were found for urea for strains CCMP2229 and C3 and for ammonium for strain C6. Rates of asmilation into protein also varied day and night, but overall were highest for urea. The comparison of maximal uptake rates as well as assimilation efficiencies indicate that ammonium and urea are utilized (taken up and assimilated) more than twice was fast as nitrate on a diel basis.     

Diurnal changes in nitrogen assimilation of tobacco roots.

To gain an insight into the diurnal changes of nitrogen assimilation in roots the in vitro activities of cytosolic and plasma membrane-bound nitrate reductase (EC 1.6.6.1), nitrite reductase (EC 1.7.7.1) and cytosolic and plastidic glutamine synthetase (EC 6.3.1.2) were studied. Simultaneously, changes in the contents of total protein, nitrate, nitrite, and ammonium were followed. Roots of intact tobacco plants (Nicotiana tabacum cv. Samsun) were extracted every 3 h during a diurnal cycle. Nitrate reductase, nitrite reductase and glutamine synthetase were active throughout the day-night cycle. Two temporarily distinct peaks of nitrate reductase were detected: during the day a peak of soluble nitrate reductase in the cytosol, in the dark phase a peak of plasma membrane-bound nitrate reductase in the apoplast. The total activities of nitrate reduction were similar by day and night. High activities of nitrite reductase prevented the accumulation of toxic amounts of nitrite throughout the entire diurnal cycle. The resulting ammonium was assimilated by cytosolic glutamine synthetase whose two activity peaks, one in the light period and one in the dark, closely followed those of nitrate reductase. The contribution of plastidic glutamine synthetase was negligible. These results strongly indicate that nitrate assimilation in roots takes place at similar rates day and night and is thus differently regulated from that in leaves.     

Diurnal variations of intracellular nitrate storage by marine diatoms: effects of nutritional state

Nitrate uptake and accumulation were measured in N-sufficient, N-limited, and 24 h N-starved cells of Phaeodactylum tricornutum Bohlin and Skeletonema costatum Grev., growing under a light-dark cycle. In N-sufficient cells the uptakerate was reduced at night and showed possible variation during the light period. In N-limited and N-starved cells such diurnal changes in uptake were absent, except extremely rapid, but short-lived nitrate uptake was observed early in the morning in N-limited cells. The nitrate accumulation inside the cells reflects a transient uncoupling between uptake and reduction mostly due to the light-dark cycle and strongly influenced by the physiological state of the cells. This accumulation is high during the night and at the beginning of the day, but decreases during the light period in N-sufficient cells. On the other hand, nitrate storage in N-sufficient and N-limited cultures shows a strong diurnal pattern, with maximum accumulation, suggesting the greatest uncoupling between uptake and assimilation, in the morning. In N-starved cells, accumulation is high and constant during the entire light period. Consequently, the uncoupling between nitrate uptake and reduction decreases during the light period but increases with N deficiency. These results indicate the importance of light periodicity and nutritional state of the cells on the nitrate utilization. They reveal the need for more systematic studies on N dynamics in relation to nutrient-light regimes.     

Nitrate reductase and glutamine synthetase activities,nitrate and ammonia assimilation,in the unicellular alga Cyanidium caldarium

Nitrogen-limited continuous cultures of Cyanidium caldarium contained induced levels of glutamine synthetase and nitrate reductase when either nitrate or ammonia was the sole nitrogen source. Nitrate reductase occurred in a catalytically active form. In the presence of excess ammonia, glutamine synthetase and nitrate reductase were repressed, the latter enzyme completely. In the presence of excess nitrate, intermediate levels of glutamine synthetase activity occurred. Nitrate reductase was derepressed but occurred up to 60% in a catalytically inactive form.Cell suspensions of C. caldarium from nitrate- or ammonialimited cultures assimilated either ammonia or nitrate immediately when provided with these nutrients. In these types of cells, as well as in cells grown with excess nitrate, the rate of ammonia assimilation was 2.5-fold higher than the rate of nitrate assimilation. It is proposed that the reduced rate at which nitrate was assimilated as compared to ammonia might be due to regulatory mechanisms which operate at the level of nitrate reductase activity.     

OLISTHODISCUS LUTEUS (CHRYSOPHYCEAE). III. UPTAKE AND UTILIZATION OF NITROGEN AND PHOSPHORUS1

Uptake and assimilation of nitrogen and phosphorus were studied in Olisthodiscus luteus Carter. A diel periodicity in nitrate reductase activity was observed in log and stationary phase cultures; there was a 10-fold difference in magnitude between maximum and minimum rates, but other cellular features such as chlorophyll a, carbon, nitrogen, C:N ratio (atoms) · cell^?1 were less variable. K_s values (~2 μM) for uptake of nitrate-N and ammonium-N were observed. Phosphorus assimilated · cell^?1· day^?1 varied with declining external phosphorus concentrations; growth rates <0.5 divisions · day^?1 were common at <0.5 μM PO_4-P. Phosphate uptake rates (K_s= 1.0–1.98 μM) varied with culture age and showed multiphasic kinetic features. Alkaline phosphatase activity was not detected. Comparisons of the nutrient dynamics of O. luteus to other phytoplankton species and the ecological implications as related to the phytoplankton community of Narragansett Bay (Rhode Island) are discussed.     

Growth, production and losses of phytoplankton in the lowland River Spree: carbon balance

1. Phytoplankton carbon assimilation and losses (exudation, dark carbon losses) as well as oxygen release and dark community respiration were measured regularly for 2 years at four stations along the lower Spree (Germany). Carbon balance of river phytoplankton was estimated using measured assimilation, metabolic losses and variations in algal carbon along a stretch of river. 2. The light/dark bottle method was modified to simulate vertical mixing. 3. Waxing and waning of phytoplankton populations dominated the load of particulate organic carbon as well as the oxygen budget of the river. 4. Phytoplankton assimilated 310–358 g C m^?2 yr^?1. A mean value of 586 mg C m^?3 day^?1 was fixed in photosynthesis, with 16.7 mg C being exuded during the day and 20.1 mg lost at night. The measured dark respiration was equivalent to only 28% of the daily gross oxygen production of the plankton community. Phytoplankton washed from upstream lakes and reservoirs was not measurably damaged by turbulent transport. 5. In spring, 18–22% of assimilated carbon was used for net biosynthesis of phytoplankton along the river course. At this time, the carbon balance of this part of the Spree was dominated by autochthonous net production. During summer, however, total carbon losses exceeded the intensive carbon assimilation. The decline of algal biomass along the river course in summer was not explicable by measurable physiological losses. The importance of sedimentation and grazing losses is discussed.     

Estudio de algunas propiedades biológicas de varias cepas de Coccidioides immitis Stiles, 1896

Summary The assimilation of sugars and nitrogenous compound by the speciesCoccidioides immitis has been studied and also some others biological propierties: proteolytic and amilolytic activity.Three strains namedCoccidioides immitis (one of then isolated in Bolivia by Dr. Veintemillas) and the strain namedTrichosporon proteolyticum were studied. The four cultures showed the same properties. Urea, asparagine and peptone are well utilized, ammonium sulphate is also utilized but potassium nitrate is not assimilated. Glucose is utilized but maltose, sucrose, galactose and lactose are not assimilated. All the strains showed proteolytic activity on the milk and gelatine but the proteolysis of the cogulated serum was not evident.