Development and characterization of microsatellite markers for a fig‐pollinating wasp (Ceratosolen sp. 1) of Ficus septica

For an undescribed fig‐pollinating wasp (Ceratosolen sp. 1) of Ficus septica, we isolated 15 polymorphic microsatellite markers from a genomic library partially enriched for GATA and CAG repeats. Polymorphism of these loci was evaluated by genotyping 40 female individuals collected from different fruits of host trees in southern Taiwan. The number of alleles per locus ranged from three to 15 and the observed heterozygosity of each locus ranged from 0.100 to 0.775. These loci would be suitable for further studies concerning population genetics, hybridization and sex ratio adjustment of the coexisting fig‐pollinating wasps.     

Development of 17 microsatellite markers for Ceratosolen constrictus, the pollinating fig wasp of Ficus fistulosa

The obligate mutualism between figs (Ficus) and fig pollinating wasps (Agaonidae) is regarded as a classic example of mutualism. Seventeen polymorphic microsatellite loci were developed for Ceratosolen constrictus, the pollinating wasp of the dioecious fig Ficus fistulosa. The number of alleles per locus ranged from two to 15 and the observed and expected heterozygosities ranged from 0.040 to 0.846 and from 0.040 to 0.916, respectively. These microsatellite loci offer a powerful tool for evolutionary and population genetic studies in C. constrictus, and gene flow of F. fistulosa.     

Characterization of microsatellite loci in the African fig Ficus sycomorus L. (Moraceae)

Microsatellite loci were characterized in the African fig tree Ficus sycomorus in order to investigate patterns of pollination and gene flow in this species. The loci characterized included new loci isolated from F. sycomorus and a single locus originally developed in Ficus carica. In total 12 loci were polymorphic when tested in between eight and 79 Namibian F. sycomorus individuals. Three of the new F. sycomorus loci were found to be polymorphic in cultivars of the edible fig F. carica suggesting a selection of these loci will be useful for population studies in other fig species.     

Disturbance effects on community structure of Ficus tinctoria fig wasps in Xishuangbanna, China: Implications for the fig/fig wasp mutualism

Abstract  Fig trees are important components of tropical forests, because their fruits are eaten by so many vertebrates, but they depend on pollinating fig wasps to produce mature fruits. Disturbance to habitat structure can have a major impact on insect diversity and composition, potentially reducing fruit yields. We investigated the impact of habitat disturbance on the fig wasp community associated with male figs of Ficus tinctoria in Xishuangbanna, China. The community comprised one pollinator species Liporrhopalum gibbosae and six non-pollinating wasp species: Sycoscapter sp.1, Philotrypesis ravii , Philotrypesis sp.1, Neosycophila omeomorpha , Sycophila sp.1, and Walkerella sp.1. More disturbed areas were characterized by higher temperatures, less shade, and more vehicle noise. The response of the fig wasp community was complex, with no simple relationship between intensity of disturbance and pollinator abundance. However, the sex ratios (proportion of male progeny) of pollinators increased significantly in more disturbed areas. We conclude that potential changes in fig wasp community composition brought about by disturbance, are unpredictable, with unclear consequences for tropical rainforest biodiversity.     

Isolation and characterization of microsatellite primers for Ceratosolen fusciceps, the fig-pollinating wasp of Ficus racemosa, and amplification in two populations

Ten microsatellite loci were isolated and characterized for Ceratosolen fusciceps, the pollinating wasp of Ficus racemosa, based on individuals from Xishuangbanna (China) and Chiangmai (Thailand). High levels of variation were found among loci for both populations; allelic number varied from two to 18 (respectively from two to 22), expected heterozygosities ranged from 0.362 to 0.890 (respectively from 0.430 to 0.930).     

Isolation of six microsatellite loci in the pollinating fig wasp,Platyscapa awekei

Platyscapa awekei DNA was enriched for several repeat motifs. Sequencing of 48 transformed colonies showed that 22 contained microsatellite loci. Eleven of these loci were tested and six of them proved to be reliable and variable. As expected from these wasps’ biology, F_IS was high (= 0.423), indicating frequent sibmating. Notwithstanding, we estimate that dispersing males may secure as much as 8% of all matings.     

Pollinating fig wasp Ceratosolen solmsi adjusts the offspring sex ratio to other foundresses

Abstract Local mate competition theory predicts that offspring sex ratio in pollinating fig wasps is female‐biased when there is only one foundress, and increased foundress density results in increased offspring sex ratio. Information of other foundresses and clutch size have been suggested to be the main proximate explanations for sex ratio adjustment under local mate competition. Our focus was to show the mechanism of sex ratio adjustment in a pollinating fig wasp, Ceratosolen solmsi Mayr, an obligate pollinator of the functionally dioecious fig, Ficus hispida Linn., with controlled experiments in the field. First, we obtained offspring from one pollinator and offspring at different oviposition sequences, and found that offspring sex ratio decreased with clutch size, and pollinators produced most of their male offspring at the start of bouts, followed by mostly females. Second, we found that offspring sex ratio increased with foundress density, and pollinators did adjust their offspring sex ratio to other females in the oviposition patches. We suggest that when oviposition sites are not limited, pollinators will mainly adjust their offspring sex ratio to other foundresses independent of clutch size changes, whereas adjusting clutch size may be used to adjust sex ratio when oviposition sites are limited.     

对叶榕传粉榕小蜂在时间格局上的种群动态

在西双版纳热带地区,研究了不同时间里对叶榕传粉榕小蜂的自然种群数量变化规律,并结合控制性放蜂实验获得了实验种群的变化规律。结果表明,在不同年的同月份和同年不同月份,对叶榕传粉榕小蜂自然种群数量变化主要受气候因素的影响,低温的1月和干热的4月对传粉榕小蜂种群繁殖和生长均不利,导致种群数量最低。在人为控制情况下放蜂,不同月放蜂对后代产生雌蜂数量影响非常明显,而对雄蜂数量则无明显差异。在同月相近的不同日放蜂时,对叶榕传粉榕小蜂繁殖的后代种群数量无显著差异。     

Isolation and characterisation of 26 polymorphic microsatellite markers for the parasitoid wasp Trichogramma dendrolimi (Hymenoptera: Trichogrammatidae)

Polymorphic microsatellite markers were developed for the parasitoid wasp Trichogramma dendrolimi. Forty-four microsatellites were isolated from a (TCG)₈-enriched genomic library and characterised. Twenty-six of these loci were polymorphic and could be used for evaluation of the genetic variation of T. dendrolimi.     

New insights into the fungal community from the raw genomic sequence data of fig wasp Ceratosolen solmsi

Background

To date, biologists have discovered a large amount of valuable information from assembled genomes, but the abundant microbial data that is hidden in the raw genomic sequence data of plants and animals is usually ignored. In this study, the richness and composition of fungal community were determined in the raw genomic sequence data of Ceratosolen solmsi (RGSD-CS).

Results

To avoid the interference from sequences of C. solmsi, the unmapped raw data (about 17.1%) was obtained by excluding the assembled genome of C. solmsi from RGSD-CS. Comparing two fungal reference datasets, internal transcribed spacer (ITS) and large ribosomal subunit (LSU) of rRNA, the ITS dataset discovered a more diverse fungal community and was therefore selected as the reference dataset for evaluating the fungal community based on the unmapped raw data. The threshold of 95% sequence identity revealed many more matched fungal reads and fungal richness in the unmapped raw data than those by identities above 95%. Based on the threshold of 95% sequence identity, the fungal community of RGSD-CS was primarily composed of Saccharomycetes (88.4%) and two other classes (Agaricomycetes and Sordariomycetes, 8.3% in total). Compared with the fungal community of other reported fig wasps, Agaricomycetes and Eurotiomycetes were found to be unique to C. solmsi. In addition, the ratio of total fungal reads to RGSD-CS was estimated to be at least 4.8 × 10⁻³, which indicated that a large amount of fungal data was contained in RGSD-CS. However, rarefaction measure indicated that a deeper sequencing coverage with RGSD-CS was required to discover the entire fungal community of C. solmsi.

Conclusion

This study investigated the richness and composition of fungal community in RGSD-CS and provided new insights into the efficient study of microbial diversity using raw genomic sequence data.

Electronic supplementary material

The online version of this article (doi:10.1186/s12866-015-0370-3) contains supplementary material, which is available to authorized users.     

Effects of within-tree flowering asynchrony on the dynamics of seed and wasp production in an Australian fig species

Abstract. Within-tree flowering asynchrony in figs, which may allow pollinating wasps to avoid the risks of dispersal in inclement conditions, has been predicted as a trait to be favoured in highly seasonal environments. Comparisons of such asynchronous figs with better-known species that exhibit within-tree synchrony might also be expected to reveal differences in the outcome of the conflict between pollinator wasp and fig seed production, and the dynamics of non-pollinating wasps. This paper presents data on wasp and seed production in Ficus rubiginosa Desf. ex Vent., an asynchronous species that occurs in the highly seasonal environment of south-eastern Australia. In contrast to recent studies of figs showing within-tree flowering synchrony, syconium size was the main determinant of wasp and seed production in F. rubiginosa . Non-pollinating wasps were highly prevalent but occurred in low numbers and appeared to have relatively little impact on pollinator wasp or fig seed production. Data on flower positions revealed that non-pollinating wasps occurred almost exclusively in the outer layer of flowers, while pollinators were more abundant in the inner flower layer, which may represent an area of enemy-free space. The ratio of seeds to female pollinator wasps, an index of fig sex allocation, was more seed-biased than in several New World fig species that exhibit within-tree synchrony. This last result supports the idea that within-tree fruiting asynchrony permits a degree of self-pollination in F. rubiginosa .     

垂叶榕果内寄生瘿蚊的发生规律

在云南西双版纳热带地区,一种还未被描述属和种的瘿蚊寄生于垂叶榕果内的雌花子房里,并膨大形成虫瘿,靠取食花胚组织完成发育.通过2010年定时定点的系统观察和研究瘿蚊的发生规律,结果发现:该种瘿蚊在垂叶榕上发生频率较高,抽样的18批果有17批被瘿蚊寄生,其中有13批果的寄生比率超过了60％,部分甚至达到100％.瘿蚊寄生雌花的平均比率不超过6％,平均每个榕果内有瘿蚊1～40只不等.瘿蚊寄生不仅降低了垂叶榕的种子数,还致命性地影响着传粉榕小蜂的繁殖.在对瘿蚊的羽化、交配行为及其成虫的活动规律观察中,结果显示:寄生在一个榕果里瘿蚊需要5～7d才能羽化完,其羽化高峰期出现在第2～3天;一天内羽化的高峰出现在上午8:00-10:00及晚上20:00-0:00;而羽化后瘿蚊活动高峰期出现在上午8:00-11:00.雄蚊会帮助雌蚊离开榕果并优先获得交配权,雌蚊交配后飞离繁殖自身的榕树,去寻找适合产卵的榕果繁殖后代,雄蚊不离开羽化树,而死在繁殖自身的榕树附近.这些结果为深入研究瘿蚊的防治技术提供了科学依据.     

鸡嗉子榕内传粉小蜂与非传粉小蜂的繁殖稳定共存机制研究

【目的】榕-蜂系统是自然界协同进化和互利共生的典型模型,榕-蜂之间如何实现繁殖分配从而实现稳定共存一直是倍受研究者关注的问题,但对传粉小蜂和非传粉小蜂的繁殖稳定共存研究较少。【方法】本文选取分布在西双版纳地区的雌雄异株榕树鸡嗉子榕Ficus semicordata的雄果,通过对榕果内唯一的传粉小蜂Ceratosolen gravelyi Grandi以及4种非传粉小蜂Philotrypesis dunia Joseph,Apocrypta sp.,Platyneura sp.,Sycoscapter trifemmensis Joseph的产卵时序进行了观察,并对5种小蜂的种群数量进行统计,以及对每种小蜂产卵小花的空间分布、瘿花体积等特征进行了研究。【结果】发现:5种小蜂在产卵时间上存在分离,且传粉小蜂的种群数量远大于其他4种非传粉小蜂的种群数量之和。5种小蜂的瘿花特征也存在差异:瘿花的子房大小不同,且花梗长度即分布空间也有差异,传粉小蜂最接近果腔而非传粉小蜂则更多地利用中层和内层的小花。【结论】结果说明在鸡嗉子榕有限的空间内,5种小蜂通过产卵时间和生长空间的分离,实现了减少竞争以及长期共存的特征,维持了榕-蜂系统的稳定性。     

Longevity, early emergence and body size in a pollinating fig wasp--implications for stability in a fig-pollinator mutualism

1. Fig trees (Ficus) are pollinated only by agaonid wasps, whose larvae also gall fig ovules. Each ovule develops into either a seed (when pollinated) or a wasp (when an egg is also laid inside) but not both. 2. Ovipositing wasps (foundresses) favour ovules near the centre of the enclosed inflorescence (syconium or 'fig'), leaving ovules near the outer wall to develop into seeds. This spatial stratification of wasps and seeds ensures reproduction in both partners, and thereby enables mutualism persistence. However, the mechanism(s) responsible remain(s) unknown. 3. Theory shows that foundresses will search for increasingly rare inner ovules and ignore outer ovules, as long as ovipositing in outer ovules is sufficiently slow and/or if inner ovules confer greater fitness to wasps. The fig-pollinator mutualism can therefore be stabilized by strong time constraints on foundresses and by offspring fitness gradients over variation in ovule position. 4. Female fig wasps cannot leave their galls without male assistance. We found that females in outer ovules were unlikely to be released. Inner ovules thus have added value to foundresses, because their female offspring are more likely to mate and disperse. 5. For those offspring that did emerge, gall position (inner/outer) and body size did not influence the order in which female pollinators exited syconia, nor did early emerging wasps enjoy increased life spans. 6. We also found that the life spans of female wasps nearly doubled when given access to moisture. We suggest that conflict resolution in the fig-pollinator mutualism may thus be influenced by tropical seasonality, because wasps may be less able to over-exploit ovules in dry periods due to time constraints.     

Isolation and characterization of nine polymorphic microsatellite loci in the rock carp, Procypris rabaudi (Tchang)

Nine highly polymorphic microsatellite loci were isolated from AC- and GATA-repeat microsatellite enrichment DNA libraries in the rock carp, Procypris rabaudi (Tchang). The number of alleles for these loci ranged from eight to 18 in tested individuals. Polymorphism information content ranged from 0.712 to 0.908 with an average of 0.837. Average observed and expected heterozygosities were 0.719 and 0.870, respectively. These molecular markers will be useful for the assessment of genetic diversity and analysis of population structure in wild rock carp.     

Drastic post‐LGM expansion and lack of historical genetic structure of a subtropical fig‐pollinating wasp (Ceratosolen sp. 1) of Ficus septica in Taiwan

The climatic oscillations of the last glacial period have had profound influences on the demography and levels of genetic diversity of extant species. Molecular evidence of glacial effects on temperate species has been well documented, whereas little is known regarding that on subtropical species. Here we present analyses based on partial sequences of the mitochondrial cytochrome c oxidase subunit I (COI) gene (1052 bp) and genotypes at 15 microsatellite loci to investigate the historical demography, population structure and ongoing gene flow of an undescribed fig‐pollinating wasp (Ceratosolen sp. 1) of Ficus septica in subtropical Taiwan. Reconstructed historical demography based on the coalescent tree of COI sequences suggests that C. sp. 1 has undergone a drastic population expansion which was tightly coupled with climatic changes since the last glacial maximum (LGM). The magnitude of the population size change was approximately 500‐fold, indicating that the population of this wasp and its host was likely highly compressed during the last glacial period. The lack of significant population differentiation (F_ST < 0.02, for all pairwise F_ST values) may be due to rapid postglacial expansion facilitated by long‐distance dispersal, although a low frequency of first‐generation migrants was detected. Our results clearly demonstrate how recent climatic changes since the LGM and dispersal ability have jointly shaped the genetic composition of a subtropical fig‐pollinating wasp.     

Characterization of microsatellite loci isolated from the wasp, Microstigmus nigrophthalmus (Hymenoptera)

Fifty‐two microsatellite loci were characterized in 22–31 unrelated females of the wasp (Microstigmus nigrophthalmus) collected from the Mata do Paraiso, Viçosa, M.G., Brazil. Fifty‐one of these loci were developed from a microsatellite‐enriched genomic library derived from M. nigrophthalmus and one was derived from the wasp, Ormyrus nitidulus. The genus Microstigmus represents an independent origin of social behaviour in the Hymenoptera and is thus of great potential in the study of social evolution.     

Figs (Ficus spp.) and fig wasps (Chalcidoidea, Agaonidae): hypotheses for an ancient symbiosis

Figs and their pollinating fig wasps are dependent on one another for propagation of their own kinds. The wasps reproduce by ovipositing through the styles of female flowers within the closed fig receptacles (syconia). About half of the female flowers within the syconia of monoecious figs have styles which are longer than the ovipositors of the wasp, and they will therefore produce seeds rather than wasp larvae. Since a longer ovipositor would enable a wasp to reach more ovules and deposit more eggs, the question arises at to why longer ovipositors have not evolved.
In an attempt to answer this question, four seemingly plausible hypotheses are examined but each is shown to be problematical in some way. Consideration is then given to a fifth hypothesis which proposes that ovipositor length is constrained by abortion of syconia with relatively few seed embryos and many agaonid larvae. It is argued first that this pattern of abortion will be selected during a sustained period of heavy wasp infestation because seeds will then become scarce relative to pollen-carrying wasps. Increased expenditure by the fig on seed production would therefore be favoured by natural selection. A greater expenditure on seeds would occur if young syconia with exceptionally heavy wasp infestations were dropped and the saved nutrients invested in syconia of a subsequent crop containing average levels of wasp larvae and seeds. Provided that the energy and nutrient cost of dropping young syconia is small, the selective advantage to the wasp of longer ovipositors is eliminated in this way. A stable coexistence of figs and wasps is therefore possible. The paper concludes by discussing two general predictions of the abortion hypothesis, and how these may be tested.     

Development and characterization of microsatellite markers for a monoecious Ficus species,Ficus insipida,and cross‐species amplification among different sections of Ficus

The animal‐mediated pollination and seed‐dispersal mutualisms of Ficus species give them key roles in tropical ecosystems, but may make them vulnerable to habitat fragmentation. The development of highly polymorphic markers is needed to analyse their genetic diversity and investigate the effects of fragmentation on gene flow. Of thirteen microsatellite loci isolated from Ficus insipida, a monoecious species in French Guiana, eleven were polymorphic (two to six alleles each). High levels of variation were found among loci; expected heterozygosities ranged from 0.151 to 0.715. All markers revealed a broad cross‐species affinity when tested in 23 other Ficus species.     

Characterization of microsatellite loci in fulvous fruit bat Rousettus leschenaulti

Rousettus leschenaulti is an abundant species in many countries of South‐East Asia, including south China. We isolated seven microsatellite loci in R. leschenaulti from genomic DNA enriched for CA repeats with the enriched library method. A total of 56 samples from a population in the Guangxi Province of China were tested with these microsatellite markers. The polymorphism ranged from seven to 16 alleles, and the observed heterozygosity was 84–94%. It is the first time microsatellite markers were characterized from R. leschenaulti, and these markers can be an important tool for analysing population structure and genotypic diversity.