State-of-the-Art Review of Biocementation by Microbially Induced Calcite Precipitation (MICP) for Soil Stabilization

Biocementation is a recently developed new branch in geotechnical engineering that deals with the application of microbiological activity to improve the engineering properties of soils. One of the most commonly adopted processes to achieve soil biocementation is through microbially induced calcite precipitation (MICP). This technique utilizes the metabolic pathways of bacteria to form calcite (CaCO₃) that binds the soil particles together, leading to increased soil strength and stiffness. This paper presents a review of the use of MICP for soil improvement and discusses the treatment process including the primary components involved and major affecting factors. Envisioned applications, potential advantages and limitations of MICP for soil improvement are also presented and discussed. Finally, the primary challenges that lay ahead for the future research (i.e. treatment optimization, upscaling for in situ implementation and self-healing of biotreated soils) are briefly discussed.     

Improvement of Coarse Sand Engineering Properties by Microbially Induced Calcite Precipitation

Abstract

This paper investigates the effectiveness of microbially induced calcite precipitation method in improving the strength and stiffness of coarse sands using treatments based on a four-phase percolation technique. An increase of biochemical treatment cycles was associated with increased deposition of calcium carbonate (CaCO₃) and consequently an increase in compressive strength. Furthermore, the bio-cemented coarse sand retained reasonable porosity and permeability, which should allow dissipation of pore water pressure if required. The results also establish a correlation between the strength gained and stiffness of the bio-cemented coarse sand with the increase in the amount of deposited CaCO₃, initial relative density and dry density. Scanning electron microscopy and electron dispersive spectroscopy analysis indicate that the inter-structure of the bio-cemented coarse sand tend to change in morphology based upon the number of biochemical treatments used.     

Upscaling Effects of Soil Improvement by Microbially Induced Calcite Precipitation by Surface Percolation

This study has contributed to the technology of soil stabilization via biocementation based on microbially induced calcite precipitation. The newly described method of in situ soil stabilization by surface percolation to dry soil under free draining environment is tested for its up-scaling potential. Then, 2-m columns of one-dimensional trials indicated that repeated treatments of fine sand (<0.3 mm) could lead to clogging closed at the injection end, resulting in limited cementation depth of less than 1 m. This clogging problem was not observed in 2 m coarse (>0.5 mm) sand columns, allowing strength varying between 850 to 2067 kPa along the entire 2 m depth. Three-dimensional fine sand cementation trials indicated that relatively homogenous cementation in the horizontal direction could be achieved with 80% of cemented sand cementing to a strength between 2 to 2.5 MPa and to a depth of 20 cm. A simple mathematical model elucidated that the cementation depth was dependent on the infiltration rate of the cementation solution and the in-situ urease activity. The model also correctly predicted that repeated treatments would enhance clogging close to the injection point. Both experimental and simulated results suggested that the surface percolation technology was more applicable for coarse sand.     

Factors Controlling Microbially Induced Desaturation and Precipitation (MIDP) via Denitrification during Continuous Flow

Three continuous-flow column experiments were conducted to investigate the effects of nitrate loading rate and input concentrations of acetate and calcium on the effectiveness of denitrification to promote microbially induced desaturation and precipitation (MIDP). MIDP differs from microbially induced carbonate precipitation (MICP) in that it relies upon desaturation by biogenic gas production, along with carbonate precipitation, to improve the behavior of saturated granular soil. Denitrification is a stepwise process that is susceptible to inhibition and accumulation of intermediates, like nitrite, due to unfavorable chemical conditions (e.g., low pH). Therefore, nitrate reduction, nitrite accumulation, calcite saturation, and formation of carbonate precipitates were monitored in the columns. Factors investigated in these experiments included the effects of nitrate loading rate and input concentrations of calcium and acetate. Low nitrate-loading rates (i.e., ≤0.7?mol/m²-day) generally led to favorable outcomes (i.e., less accumulation of intermediates and more efficient carbonate precipitation). However, faster precipitation rates associated with low nitrate-loading rates led to smaller carbonate crystals and a less uniform precipitation pattern (i.e., precipitation focused near the nutrient source). Input concentrations of calcium and acetate also affected MIDP, but to a lesser extent than nitrate loading rate. The most important stimulated denitrifying bacteria, identified via 16S rDNA sequencing of suspended and dissolved DNA in the soil columns, were Bacillus species, Pseudomonas species, Brevundimonas species, and members of the Rhizobiaceae family. The results support that lower nitrate loading rates can be beneficial for MIDP although higher nitrate loading rates might be useful for some soil improvement applications.     

Microbially Induced Calcium Carbonate Precipitation on Surface or in the Bulk of Soil

Microbial precipitation of calcium carbonate takes place in nature by different mechanisms. One of them is microbially induced carbonate precipitation (MICP), which is performed due to bacterial hydrolysis of urea in soil in the presence of calcium ions. The MICP process can be adopted to reduce the permeability and/or increase the shear strength of soil. In this paper, a study on the use of Bacillus sp., which was isolated from tropical beach sand, to perform MICP either on the surface or in the bulk of sand is presented. If the level of calcium salt solution was below the sand surface, MICP took place in the bulk of sand. On the other hand, if the level of calcium salt solution was above the sand surface, MICP was performed on the sand surface and formed a thin layer of crust of calcium carbonate. After six sequential batch treatments with suspension of urease-producing bacteria and solutions of urea and calcium salt, the permeability of sand was reduced to 14 mm/day (or 1.6×10^?7 m/s) in both cases of bulk and surface MICP. Quantities of precipitated calcium after six treatments were 0.15 and 0.60 g of Ca per cm² of treated sand surface for the cases of bulk or surface MICP, respectively. The stiffness of the MICP treated sand also increased considerably. The modulus of rupture of the thin layer of crust was 35.9 MPa which is comparable with limestone.     

Reducing Soil Permeability Using Microbial Induced Carbonate Precipitation (MICP) Method: A Case Study of Shiraz Landfill Soil

Abstract

Improvement of engineering properties of soils to meet project requirements has long been subject of interest to civil engineers. One of the environment-friendly methods that have recently been used for this purpose is the biological method. These methods that actually benefit from various sciences such as biology, biochemistry, and civil engineering, use biological products or organisms such as bacteria that are commonly found in soils. In this study, the reduction of permeability or hydraulic conductivity of Shiraz landfill base soil using microbial induced calcite precipitation (MICP) has been explored. B. sphaericus was used to treat the soil. Falling head permeability tests are conducted to measure soil samples’ permeability before and after biological treatment. The target variables were the curing time, bacterial density, optimal nutrient content, and soil unit weight. The test results demonstrated that the permeability of the samples treated with Bacillus sphaericus decreases by increasing curing time, the density of calcium chloride solution and bacterial density of samples. This study showed that the MICP can be utilized as a new environment-friendly method for reducing the soil permeability at the base and walls of the landfill to form a barrier between the waste and the groundwater and substrata.     

Evaluation of Shear Strength Parameters of Sandy Soils upon Microbial Treatment

A new method for soil stabilization known as microbial-induced calcite precipitation (MICP) has been the focus of research in this area during the last decade. In this method, the reaction of microorganisms in the presence of urea and calcium chloride is used to produce calcite. Despite the large numbers of bacteria in soil, Sporobacillus pasteurii (previously known as Bacillus pasteurii) has the most capability to create cementation between soil particles in the MICP method due to its high urease activity. In this paper, the effect of MICP treatment on the shear strength characteristics of a sandy soil was studied. The change in the shear strength of sandy soil upon MICP treatment was measured using a strain-controlled direct shear test before and after treatment of the soil samples. The results showed an increase of 44–86% in the shear strength of the sandy soil after 15 days of MICP treatment compared to the untreated soil. The enhanced shear strength was the result of an increase in both the cohesion intercept and angle of internal friction. The increase in the cohesion intercept was more significant than the increase in the angle of internal friction.     

Efficacy of Fe3O4/Starch Nanoparticles on Sporosarcina pasteurii Performance in MICP Process

The microbial induced calcite precipitation (MICP) has been explored using well-known urease producer bacterium Sporosarcina pasteurii for many applications including soil stabilization. Urease enzyme hydrolyzes urea and in the presence of calcium chloride causes calcium carbonate precipitation between sand particles increasing sand stiffness and strength. In this study, the liquefied soil samples from Anzali coast were positioned inside injection columns by standard positioning technique. The columns were treated by injecting S. pasteurii suspension and cementation solution (CaCl₂ and urea). The effect of different conditions consisting of number of injections, injection intervals, flow rate, and ratio of injection solution on unconfined compression strength (USC) of sands formed inside the columns were evaluated. The results indicated that soil strength was increased when ratio of reactant solutions and injection time were elevated. Moreover, the maximum Ca-precipitation in MICP reaction in liquid medium was obtained while Fe₃O₄/starch concentration and time of addition of nanoparticle to culture medium were 10.8?mg/L and 1.4?h, respectively. The USC results showed that the columns injected by bacterial suspension treated by Fe₃O₄/starch under optimized conditions improved the soil strength up to 1200?kPa in comparison to the control column as 220?kPa.     

Evidences for Bioprecipitation of Pedogenic Calcite by Calcifying Bacteria from Three Different Soils of L'Aquila Basin (Abruzzi,Central Italy)

To provide further evidences on the role of bacterial soil species in the development of calcium carbonate deposits in soil, we isolated 36 heterotrophic bacterial strains from three soils of L'Aquila basin characterized by different CaCO₃ content and tested their ability to precipitate CaCO₃ when cultured on a Ca-rich medium. We found that the majority (63.89%) of these isolates could precipitate CaCO₃ minerals at 27°C. The aptitude to calcification (time and crystal amount) of each calcifying strains, morphology (SEM) and mineralogy of the formed bioliths were also investigated. X-ray diffraction confirmed the production of calcite. Crystal formation was not observed in the controls. Organic matter, total N and assimilable P, cation exchange capacity and exchangeable Ca²⁺, Mg²⁺, K⁺, Na⁺, pH, total and active calcium carbonate content, electric conductivity, skeleton, sand, silt and clay fractions of each soil sample were determined and related with its microbiological parameters. We found that the CaCO₃ content of soil was significatively related, in particular, to the percentage of calcifying bacterial strains (r = 0.95) and to the heterotrophic bacterial density (r = 0.98), which was found significatively related also with Ca²⁺ content of soil (r = ?0.97) and its CEC (r = ?0.97).     

Assessment of the Parameters Influencing Microbial Calcite Precipitation in Injection Experiments Using Taguchi Methodology

Soil improvement is one of the major concerns in civil engineering. Therefore, a variety of approaches have been employed for different soil types. The loose granular soils and sediments have always imposed challenges due to their low strength and bearing capacity as well as presenting difficulties in drilling and excavation. Biomediated soil improvement, i.e., utilizing some bacteria to precipitate calcite on soil particles, has recently been introduced as a novel link of biotechnology and civil engineering to improve the problematic soils. Biogrout as a branch of biomediated soil improvement is based upon microbial calcium carbonate precipitation (MICP). In the present study, the Taguchi method with the aim of optimizing the process was utilized to design the experiments (DOE). A standard L9 orthogonal array with four parameters comprising bacterial cell concentration, molar concentration ratio of nutrient solution, curing time, and flow rate, each assigned to three levels, was selected. In this regard, soil samples were stabilized in sandy soil columns. Two-phase injections were conducted by injecting the bacterium Sporosarcina pasteurii PTCC 1642 in the first phase and nutrient in the second phase. Specimens were subjected to an unconfined compressive strength (UCS) test. ANOVA pointed out how effectual each parameter was. The most effective parameter was curing time, which accounted for 45.97% of the overall variance of the experimental data followed by bacterial cell concentration (22.01%), nutrient strength (19.98%), and flow rate (12.04%). Predicted UCS values for the optimum condition were validated in a confirmation test. Indeed, the UCS of the soil increased from 85 kPa in the control sample to 930 kPa for the optimally treated specimen. It was concluded that rather than curing time, the other parameters are almost equally influential in the applied injection procedure.     

Production of Active Oxygen Species from Taxus cuspidata Induced by Far-UV Radiation (in English)

In order to understand the role of active oxygen species in mediating plant injuries induced by far-UV radiation, seedlings of Taxus cuspidata Sieb. et Zucc. were irradiated by far-UV rays in laboratory for 4 weeks. The production of organic free-radicals in detached needles, and the production of O-·2 and 1O2 in isolated chloroplasts were detected weekly by electron spin resonance (ESR) to evaluate their relative importance. The results show that the cumulative effect of far-UV irradiation, is best indicated by the production of organic free radicals in the needles, O-·2 production in chloroplasts is the next. The enhancement of 1O2 production in chloroplasts by the cumulative far-UV irradiation seems to be not so important as O-·2 in mediating injuries induced by far-UV radiation because of its high background value.     

Modeling the Impact of Oxygen Reaeration on Natural Attenuation

Based on studies of leaking petroleum storage tank (LPST) sites in Texas and California, the average plume of benzene, toluene, ethylene, and xylenes (BTEX) is between 61 and 132 m (200 and 400 ft) long. Standard modeling of BTEX plumes produces plumes well in excess of observed plume lengths. The amount of oxygen carried into the plume zone with clean upgradient water often is insufficient to account for the levels of biodegradation observed in these studies. Traditional recharge of oxygen-containing water into an aquifer adds insufficient oxygen to the system and cannot account for the observed plume lengths. Research has shown that anaerobic processes can contribute to biodegradation in certain cases; however, anaerobic pathways are not included in this work. Reaeration of oxygen-depleted aquifers by diffusive transport of oxygen through the vadose zone has generally been neglected as a way to introduce oxygen into surficial aquifers. The observed plume lengths and preliminary laboratory results indicate that this source of oxygen should be accounted for in any natural attenuation model of BTEX contamination. This approach to modeling reaeration has been incorporated into the finite-element groundwater flow and contaminant transport code, FLOTRAN. Adding diffusion-driven reaeration to the modeling process produces BTEX plumes consistent with observed plume lengths.     

活性氧对外源IAA诱导的ACC合酶活性的影响(英)

本文试图从活性氧的角度阐明外源IAA诱导ACC合酶活性的机制。绿豆 (PhaseolusradiatusL .)幼苗的乙烯产生及ACC合酶活性从萌发的第 5天开始上升 ,到第 10天达到高峰 ,接着下降。 10 μmol/L的外源IAA能明显促进绿豆幼苗乙烯的产生及ACC合酶的活性 ,同时也促进了超氧阴离子自由基 (O-·2 )、过氧化氢 (H2 O2 )的产生。显示外源IAA诱导的ACC合酶的活性与其诱导的活性氧的产生具有某种相关性。外源O-·2 处理能明显提高绿豆幼苗的乙烯产生速率及ACC合酶的活性 ,而外源H2 O2 无论对乙烯产生或ACC合酶的活性均没有明显的作用。外加O-·2 的清除剂SOD对绿豆幼苗乙烯的产生及ACC合酶活性的提高有一定的抑制作用 ,而外源过氧化氢酶却没有明显的作用。为此我们可以得出结论 :外源IAA诱导的绿豆幼苗ACC合酶活性的提高可能是由于其诱导的O-·2 产生的升高引起的 ,这可能也是高等植物中调控乙烯生物合成的机制之一 ;而IAA诱导的H2 O2 产率的升高并不是其诱导ACC合酶活性升高的原因。     

活性氧对外源IAA诱导的ACC合酶活性的影响

本文试图从活性氧的角度阐明外源IAA诱导ACC合酶活性的机制.绿豆(Phaseolus radiatus L.)幼苗的乙烯产生及ACC合酶活性从萌发的第5天开始上升,到第10天达到高峰,接着下降.10 μmol/L的外源IAA能明显促进绿豆幼苗乙烯的产生及ACC合酶的活性,同时也促进了超氧阴离子自由基(O(-)/(*)2)、过氧化氢(H2O2)的产生.显示外源IAA诱导的ACC合酶的活性与其诱导的活性氧的产生具有某种相关性.外源O(-)/(*)2处理能明显提高绿豆幼苗的乙烯产生速率及ACC合酶的活性,而外源H2O2无论对乙烯产生或ACC合酶的活性均没有明显的作用.外加O(-)/(*)2的清除剂SOD对绿豆幼苗乙烯的产生及ACC合酶活性的提高有一定的抑制作用,而外源过氧化氢酶却没有明显的作用.为此我们可以得出结论:外源IAA诱导的绿豆幼苗ACC合酶活性的提高可能是由于其诱导的O(-)/(*)2产生的升高引起的,这可能也是高等植物中调控乙烯生物合成的机制之一;而IAA诱导的H2O2产率的升高并不是其诱导ACC合酶活性升高的原因.     

高压氧联合地塞米松治疗突发性耳聋的疗效及对血液流变学的影响

目的:研究高压氧联合地塞米松治疗突发性耳聋的疗效及对血液流变学的影响。方法:选择2012年6月至2015年1月在我院接受治疗的突发性耳聋患者90例(124耳)进行研究。根据数字法随机分成观察组(45例,60耳)及对照组(45例,64耳),两组均给予常规的改善内耳微循环及神经营养类制剂治疗,对照组另给予地塞米松治疗,观察组在对照组基础上另给予高压氧治疗,治疗1个疗程后对比两组疗效,听力改善程度以及血液流变学指标变化。结果:观察组的总有效率是98.33%,显著高于对照组的89.06%,差异有统计学意义(P0.05)。治疗后观察组的听力损失程度显著优于对照组,纯音听阈显著低于对照组,差异有统计学意义(P0.05)。治疗后观察组的高切粘度、中切粘度、低切粘度、红细胞聚集指数均分别显著低于对照组,红细胞变形指数显著高于对照组,差异均有统计学意义(均P0.05)。结论:高压氧联合地塞米松治疗突发性耳聋患者具有更为显著的疗效,且可有效改善患者的血液流变学指标,值得临床推荐。     

Oxygen uptake through water during early life of Anabas testudineus (Bloch)

The O₂ consumption (mg/hr) through water in case of Anabas testudineus during development and growth has been measured and its relationship to body weight or length studied.The logarithmic plot of 02 uptake through water either against body weight or length suggested a statistically significant (P > 3.53) two-component curve, the point of intersection being at 11 mg body weight and 1.78 cm body length. These are the theoretical values of weight or length at which the responsibility of supplementing nearly 40% of the total O₂ demand through the newly developed air breathing organ falls in the early life of the fish. One of the impelling causes forcing developing fry of Anabas to adopt a bimodal gas exchange machinery seems to be 4 fold increase in the diffusion distance at the gills.     

Effect of Oxygen Tension, Mn(II) Concentration, and Temperature on the Microbially Catalyzed Mn(II) Oxidation Rate in a Marine Fjord

We present evidence that the oxidation of Mn(II) in a zone above the O₂/H₂S interface in the water column of Saanich Inlet, British Columbia, Canada, is microbially catalyzed. We measured the uptake of ⁵⁴Mn(II) in water samples under in situ conditions of pH and temperature and in the presence and absence of oxygen. Experiments in the absence of oxygen provided a measure of the exchange of the tracer between the dissolved and solid pools of Mn(II); we interpret the difference between experiments in the presence and absence of oxygen to be a measure of Mn(II) oxidation. Using this method we examined the effect of oxygen tension, Mn(II) concentration, and temperature on the initial in situ Mn(II) oxidation rate (V₀). Mn(II) oxidation was almost twice as fast under conditions of 67% air saturation (V₀=5.5 nM h⁻¹) as with the in situ concentration of 15 μM (5% air saturation; V₀=3.1 nM h⁻¹). Additions of ca. 18 μM Mn(II) completely inhibited all Mn(II) oxidation at three different depths in the oxidizing zone, and there was a temperature optimum for Mn(II) oxidation of around 20°C. These results are consistent with biologically mediated Mn(II) oxidation and indicate that the rate is limited by both oxygen and the concentration of microbial binding sites in this environment.     

Oxygen profiles in intertidal sediments of Ria Formosa (S. Portugal)

Microelectrode oxygen profiles were measured in intertidal sediments from Ria Formosa (S. Portugal), a very productive shallow coastal lagoon. Four intertidal sampling sites were selected according to different sediment characteristics. Individual profiles revealed a high degree of lateral variability on a centimeter spatial scale. Nevertheless, consistent differences were observed between oxygen profiles measured in atmosphere-exposed and inundated intertidal sediments: in organically poor sand oxygen-penetration depth varied from 3 mm in inundated cores to more than 7 mm in exposed ones, while in organically rich muddy sand and mud it remained between 0.5–2.0 mm. The oxygen input from inundated to exposed conditions was estimated for each sampling site. Semi-diurnal tidal fluctuation, leading to periodical atmospheric exposure of sediments plays a major role in the oxygenation process of intertidal zones of Ria Formosa.     

Air Pollution: Involvement of Oxygen Radicals (A Mini Review)

In the past decades air pollution has increased worldwide. We also gained more insight into the complex interactions between different air pollutants in the atmosphere as well as their effects on living cells and organisms. It also has been unequivocally shown by several groups in different countries that oxy radicals play an outstanding role in the interconversion of air pollutants as well as during the manifestation of toxic effects. Not only living systems are affected by air pollutants, but also inorganic systems such as buildings and sculptures. In the following overview the most important reactions occuring in the atmosphere as well as effects of oxidative gaseous compounds and particles such as diesel soot and asbestos will be discussed.