Using artificial selection to understand plastic plant phenotypes

The plasticity of any given trait, which has a genetic basisand which may or may not be adaptive, can intensify or attenuateevolved responses, and can itself evolve in response to selectiondepending on the scale of spatial or temporal heterogeneity.To investigate the complex function and evolution of plastictraits, an appealing yet challenging approach is assessing responsesto artificial selection. Here, I review how artificial selectionhas been employed to explore four botanical research themes:(1) relationships between plastic and evolved responses to multiplestresses, (2) integration of cellular, leaf-level, and whole-plantresponses to altered CO₂ concentrations, (3) photomorphogenicand photoperiodic development, both mediated by phytochromephotoreceptors, and (4) the evolution of the pest-induced myrosinase-glucosinolatesystem in cruciferous plants. These diverse topics are unifiednot only because they have been studied using artificial selectionexperiments, but also because they have considered variabilityin multiple traits affected by multiple factors in the externalenvironment. Limitations of such research include a dearth oflong-term studies; a surprising but often logistically necessaryomission of control or replicate lines; and numerous issuesrelating to assessing impacts of inbreeding and drift. In additionto discussing options for circumventing such limitations, Idraw attention to strategies for integrating the results ofartificial selection studies with progress in functional andevolutionary genomics.     

Integrating sensory ecology and predator-prey theory to understand animal responses to fire

Fire regimes are changing dramatically worldwide due to climate change, habitat conversion, and the suppression of Indigenous landscape management. Although there has been extensive work on plant responses to fire, including their adaptations to withstand fire and long-term effects of fire on plant communities, less is known about animal responses to fire. Ecologists lack a conceptual framework for understanding behavioural responses to fire, which can hinder wildlife conservation and management. Here, we integrate cue-response sensory ecology and predator-prey theory to predict and explain variation in if, when and how animals react to approaching fire. Inspired by the literature on prey responses to predation risk, this framework considers both fire-naïve and fire-adapted animals and follows three key steps: vigilance, cue detection and response. We draw from theory on vigilance tradeoffs, signal detection, speed-accuracy tradeoffs, fear generalization, neophobia and adaptive dispersal. We discuss how evolutionary history with fire, but also other selective pressures, such as predation risk, should influence animal behavioural responses to fire. We conclude by providing guidance for empiricists and outlining potential conservation applications.     

Embolism resistance as a key mechanism to understand adaptive plant strategies

Fine-scale interconduit pit modifications regulating drought-induced embolism.

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Highlights► The hydraulic pathway of plants is vulnerable to develop air bubbles. ► Air bubble formation in plants is caused by drought or freeze–thaw events. ► Various mechanical xylem properties are correlated with drought-induced embolisms. ► Angiosperms have a greater ability to repair stem embolisms than gymnosperms. ► Secondarily woody shrubs are more embolism resistant than herbaceous relatives.     

Olfactory orientation responses of the eucalyptus woodborer, Phoracantha semipunctata, to host plant in a wind tunnel

The eucalyptus woodborer, Phoracantha semipunctata Fabricius (Coleoptera: Cerambycidae), attacks mainly species of Eucalyptus (Myrtaceae). This study investigated walking and flight behaviour of P. semipunctata males and females exposed to an odour plume originating from a log of E. globulus placed vertically in the upwind end of a wind tunnel. In control experiments, beetles were exposed to a PVC drainpipe in the same position as the log, providing a visual stimulus without host‐tree odour. No statistical differences were found between behavioural responses of either sex when exposed to the log or PVC pipe. No beetles landed on the PVC pipe, whereas 49% of the beetles exposed to host‐tree odour plume landed on the log. Beetles aged over 24 days after emergence from the host tree were more responsive than beetles aged 20–24 days, and accounted vor 86% of the beetles that landed on the log. While walking, host‐tree odour affected the behaviour of the beetles that landed on the log as follows: upwind movement and path linearity increased, whereas turning rate, stopping frequency, mean stopping time and time to take‐off flight decreased. During flight, host‐tree odour affected the behaviour of the beetles that landed on the log as follows: increased upwind flight, turning rate, flight time, flight distance, and decreased flight speed. For beetles that never lost contact with the odour plume, flight progressed upwind with narrow zigzags, and showed higher directedness upwind, path linearity, faster flight speed and lower turning rate than for beetles that lost contact with the odour plume. After loosing contact with the plume, beetles tended to decrease their upwind progression, exhibiting a sharp turn or quick counterturns followed by crosswind or downwind excursions. This led to regaining contact with the odour plume and resumed upwind progression at higher speed provided they flew within the boundaries of the plume. The results showed that host‐tree odour affects both walking and flight behaviour of P. semipunctata beetles, inducing a more directed upwind movement and landing on the visual stimulus of a tree trunk.     

Ethylene and plant responses to stress

When plants are subject to a variety of stresses they often exhibit symptoms of exposure to ethylene. Although this relationship usually results from induction of ACC synthase thus raising the concentration of the precursor of ethylene, it is now apparent that there are numerous other ways that stresses produce ethylene-like symptoms. This complex relationship between stress and ethylene-like symptoms is here termed the stress ethylene syndrome. ACC synthase exists as a multi-gene family whose individual members are differentially regulated, many by various stresses. In addition, ACC oxidase. AdoMet synthetase, enzymes in the Yang methionine cycle, and enzymes that conjugate ACC are regulated by stress. In more unusual cases, ethylene production is not increased by stress or may be reduced. There is evidence for stress effects on perception of ethylene and the potential exists that some steps of the ethylene signal transduction pathway may be influenced by stress. Because of the variability possible in the stress ethylene syndrome, it continues to be studied for a number of stresses and species. In particular, attention is being given to wounding, mechanical stress, drought, heat and water deficit stress, chilling, air pollution, chemical and salt stress, and low O₂stress. It is becoming more apparent that a number of stress responses involve interactions with other hormones.     

Ethylene and plant responses to nutritional stress

Although ethylene is known to be involved in plant response to a number of biotic and abiotic stresses, relatively little is known concerning its role in nutritional stress arising from nutrient deficiency or mineral toxicity. There is clear evidence for involvement of ethylene in the symbiosis between Rhizobium and legumes, and in the 'Strategy 1' response to Fe deficiency. Ethylene may also be generated during tissue necrosis induced by severe toxicities and deficiencies. Metal toxicity may generate ethylene through oxidative stress. Evidence for a more general role for ethylene in regulating plant responses to macronutrient deficiency is suggestive but incomplete. Few studies have addressed this interaction, and most published reports are difficult to interpret because of the unrealistic way that nutrient treatments were imposed. Deficiency of N and P appear to interact with ethylene production and sensitivity. A role for ethylene in mediating adaptive responses to P stress is suggested by the fact that P stress can induce a variety of morphological changes in root systems that are also affected by ethylene, such as gravitropism, aerenchyma formation, and root hair development. Other adaptive responses include senescence or abscission of plant parts which cannot be supported by the plant. Ethylene and other plant hormones may be involved in mediating the stress signal to generate these responses. Although existing literature is inconclusive, we speculate that ethylene may play an important role in mediating the morphological and physiological plasticity of plant responses to nutrient patches in time and space, and especially root responses to P stress.     

Receptor kinases in plant responses to herbivory

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Revisiting the Holy Grail: using plant functional traits to understand ecological processes

One of ecology's grand challenges is developing general rules to explain and predict highly complex systems. Understanding and predicting ecological processes from species' traits has been considered a ‘Holy Grail’ in ecology. Plant functional traits are increasingly being used to develop mechanistic models that can predict how ecological communities will respond to abiotic and biotic perturbations and how species will affect ecosystem function and services in a rapidly changing world; however, significant challenges remain. In this review, we highlight recent work and outstanding questions in three areas: (i) selecting relevant traits; (ii) describing intraspecific trait variation and incorporating this variation into models; and (iii) scaling trait data to community‐ and ecosystem‐level processes. Over the past decade, there have been significant advances in the characterization of plant strategies based on traits and trait relationships, and the integration of traits into multivariate indices and models of community and ecosystem function. However, the utility of trait‐based approaches in ecology will benefit from efforts that demonstrate how these traits and indices influence organismal, community, and ecosystem processes across vegetation types, which may be achieved through meta‐analysis and enhancement of trait databases. Additionally, intraspecific trait variation and species interactions need to be incorporated into predictive models using tools such as Bayesian hierarchical modelling. Finally, existing models linking traits to community and ecosystem processes need to be empirically tested for their applicability to be realized.     

Molecular aspects of plant responses to pathogens

Plants respond to infection by accumulating many compounds some of which may function in disease resistance. These include: phytoalexins, antifungal proteins, chitinases, glucanases, esterases, proteaes, phospholipases, lipoxygenases, ribonucleases, peroxidases, phenoloxidases, lignin, callose, hydroxyproline and glycine-rich glycoproteins, phenolic cross-linked polysachcarides, melanin-like pigments, salicylic acid, jasmonic acid, ethylene, peptides, oligosaccharides, hydrogen peroxide and active oxygen species. Though specific avirulence genes, elicitors and elicitor receptors have been reported, the production of defense-related compounds is nonspecific and can be elicited by pathogens, pathogen products and many organics and inorganics. The molecular implications of this specificity/nonspecificity and their significance to disease resistance and practical disease control will be discussed.     

Using physiology and behaviour to understand the responses of fish early life stages to toxicants

The use of early life stages of fishes (embryos and larvae) in toxicity testing has been in existence for a long time, generally utilizing endpoints such as morphological defects and mortality. Behavioural endpoints, however, may represent a more insightful evaluation of the ecological effects of toxicants. Indeed, recent years have seen a considerable increase in the use of behavioural measurements in early life stages reflecting a substantial rise in zebrafish Danio rerio early life‐stage toxicity testing and the development of automated behavioural monitoring systems. Current behavioural endpoints identified for early life stages in response to toxicant exposure include spontaneous activity, predator avoidance, capture of live food, shoaling ability and interaction with other individuals. Less frequently used endpoints include measurement of anxiogenic behaviours and cognitive ability, both of which are suggested here as future indicators of toxicant disruption. For many simple behavioural endpoints, there is still a need to link behavioural effects with ecological relevance; currently, only a limited number of studies have addressed this issue. Understanding the physiological mechanisms that underlie toxicant effects on behaviour so early in life has received far less attention, perhaps because physiological measurements can be difficult to carry out on individuals of this size. The most commonly established physiological links with behavioural disruption in early life stages are similar to those seen in juveniles and adults including sensory deprivation (olfaction, lateral line and vision), altered neurogenesis and neurotransmitter concentrations. This review highlights the importance of understanding the integrated behavioural and physiological response of early life stages to toxicants and identifies knowledge gaps which present exciting areas for future research.     

Challenges in using geographic information systems (GIS) to understand and control malaria in Indonesia

Malaria is a mosquito-borne disease of global concern with 1.5 to 2.7 million people dying each year and many more suffering from it. In Indonesia, malaria is a major public health issue with around six million clinical cases and 700 deaths each year. Malaria is most prevalent in the developing countries of the world. Aid agencies have provided financial and technical assistance to malaria-prone countries in an effort to battle the disease. Over the past decade, the focus of some of this assistance has been in the provision of geographic information systems (GIS) hardware, software and training. In theory, GIS can be a very effective tool in combating malaria, however, in practice there have been a host of challenges to its successful use.This review is based, in part, on the literature but also on our experience working with the Indonesian Ministry of Health. The review identifies three broad problem areas. The first of these relates to data concerns. Without adequate data, GIS is not very useful. Specific problem areas include: accurate data on the disease and how it is reported; basic environmental data on vegetation, land uses, topography, rainfall, etc.; and demographic data on the movement of people. The second problem area involves technology - specifically computer hardware, GIS software and training. The third problem area concerns methods - assuming the previous data and technological problems have been resolved - how can GIS be used to improve our understanding of malaria? One of the main methodological tools is spatial statistical analysis, however, this is a newly developing field, is not easy to understand and suffers from the fact that there is no agreement on standard methods of analysis.The paper concludes with a discussion of strategies that can be used to overcome some of these problems. One of these strategies involves using ArcView GIS software in combination with ArcExplorer (a public domain program that can read ArcView files) to deal with the problem of needing multiple copies of GIS software. Another strategy involves the development of a self-paced training package that can be used to train individuals