NOD2 mutation and mice: no Crohn's disease but many lessons to learn

Many patients with ileal Crohn's disease, a chronic intestinal inflammation, carry mutations in the gene encoding NOD2 (CARD15), but the mechanistic details of how this mutation leads to disease are not fully understood. NOD2 is expressed in antigen-presenting cells and Paneth cells, which are secretory epithelial cells of the small intestine. Two complementary studies using genetically engineered murine models help to explain the association of NOD2 malfunction and mucosal disease. One study observes a dysregulation of proinflammatory responses, suggesting that the most common NOD2 mutation in humans results in a gain of function. The other study determined that NOD2-null mutations impair the Paneth-cell antimicrobial response, which is consistent with recent findings in humans. Together, these studies fuel optimism that new therapeutic directions might emerge to better treat this severe mucosal disease.     

ESTimating plant phylogeny: lessons from partitioning

Background  

While Expressed Sequence Tags (ESTs) have proven a viable and efficient way to sample genomes, particularly those for which whole-genome sequencing is impractical, phylogenetic analysis using ESTs remains difficult. Sequencing errors and orthology determination are the major problems when using ESTs as a source of characters for systematics. Here we develop methods to incorporate EST sequence information in a simultaneous analysis framework to address controversial phylogenetic questions regarding the relationships among the major groups of seed plants. We use an automated, phylogenetically derived approach to orthology determination called OrthologID generate a phylogeny based on 43 process partitions, many of which are derived from ESTs, and examine several measures of support to assess the utility of EST data for phylogenies.     

The Global Environment Facility and biodiversity conservation: lessons to date and suggestions for future action

The last five years in particular have seen increasing attention paid to biodiversity. This culminated at the Earth Summit last June with the completion of Agenda 21 and a major international Convention on Biological Diversity, a document signed by some 165 nations. Concurrent with the Convention negotiations was the development of a global fund for biodiversity conservation and other environmental priorities, the Global Environment Facility (GEF). The GEF is the largest fund to data put forward by the international community to address biodiversity loss, but, so far, it has failed to set adequate priorities for biodiversity conservation. It has also yet to recognize the full range of biodiversity values and uses and, in general, GEF projects have not taken advantage of existing non-governmental capacity for biodiversity conservation. 1993 is a critical year for the GEF, one in which the GEF can become a critical element of global efforts to conserve biodiversity or remain an important initialive that realized only a fraction of its potential.     

Of flies,mice and neural control of food intake: lessons to learn from both models

In her book, A Room of One’s Own, the famous author Virginia Woolf writes “One cannot think well, love well, sleep well if one has not dined well”. This is true. All animals need to forage for food and consume specific nutrients to maintain their physiological homeostasis, maximize their fitness and their reproduction. After decades of research in humans and many model organisms, we now know that our brain is one of the key players that control what, when, and how much we eat. In this review, we discuss the recent literature on neural control of food intake behaviors in mice and flies with the view that these two model organisms complement one another in efforts to uncover conserved principles brains use to regulate energy metabolism and food ingestion.     

Exploring plant biodiversity: the Physcomitrella genome and beyond

For decades, plant molecular biology has focused on only a few angiosperm species. Recently, the approximately 500mega base pairs (Mb) of the haploid Physcomitrella patens genome were sequenced and annotated. Mosses such as P. patens occupy a key evolutionary position halfway between green algae and flowering plants. This draft genome, in comparison to existing genome data from other plants, allows evolutionary insights into the conquest of land by plants and the molecular biodiversity that land plants exhibit. As a model organism, P. patens provides a well-developed molecular toolbox, including efficient gene targeting in combination with the morphologically simple moss tissues. We describe current as well as future tools for P. patens research and the prospects they offer for plant research in general.     

生物防治利用生物多样性保护生物多样性

本文论述了生物防治与保护生物多样性的关系,提出生物多样性是生防作用物的必要来源,生物防治是保护生物多样性的重要措施。文中分析了自然界和农田生态系统中天敌的多样性和寄主专一性,并从外来种的治理、濒危物种和栖境的保护等几个方面探讨了生物防治对于保护生物多样性的作用。作者还强调应加强国际间天敌资源的交换,建立严格的天敌引种释放法规,以便开展更多的安全有效的生物防治项目。     

Environmental causes for plant biodiversity gradients

One of the most pervasive patterns observed in biodiversity studies is the tendency for species richness to decline towards the poles. One possible explanation is that high levels of environmental energy promote higher species richness nearer the equator. Energy input may set a limit to the number of species that can coexist in an area or alternatively may influence evolutionary rates. Within flowering plants (angiosperms), families exposed to a high energy load tend to be both more species rich and possess faster evolutionary rates, although there is no evidence that one drives the other. Specific environmental effects are likely to vary among lineages, reflecting the interaction between biological traits and environmental conditions in which they are found. One example of this is demonstrated by the high species richness of the iris family (Iridaceae) in the Cape of South Africa, a likely product of biological traits associated with reproductive isolation and the steep ecological and climatic gradients of the region. Within any set of conditions some lineages will tend to be favoured over others; however, the identity of these lineages will fluctuate with a changing environment, explaining the highly labile nature of diversification rates observed among major lineages of flowering plants.     

荒漠植被植物种多样性对空间尺度的依赖

物种多样性与空间尺度的关系是植物生态学的一个研究热点。传统植物生态学研究认为种面积曲线方程中 Z值是个近似常数 ,但近期对森林和草原群落的研究表明 Z是随尺度变化的。在荒漠带选择了 10个样地 ,每个样地包括 1m2 到 1km2 的 6个空间尺度样方 ,研究荒漠地区物种多样性与空间尺度的关系。结果表明 :荒漠植被物种多样性随空间尺度的增大空间依赖性减弱 ,Z也是随尺度变化的。对荒漠植被种面积曲线 Z的研究结果支持了 Z随尺度变化的结论 ,但 Z是随尺度增加而减小 ,斜率 z值从 0 .37降至 0 .0 35 ,与草原和森林群落 Z值随尺度增加而增加的结论是相反的。     

What plant ecologists can learn from zoology

Biology, like all sciences, is increasingly compartmentalized. This helps us to interact more easily with fellow specialists, but also tends to shield us from useful cross-fertilization with other fields. For example, plant and animal ecologists have established largely distinct research traditions over the years. Botanists studying population ecology, interspecific competition, and ecological and evolutionary aspects of sexual reproduction can benefit by importing more of the conceptual advances occurring in zoology (and vice versa). Botanists working on plant-animal interactions have a similar opportunity to shed light on their questions by learning more about the animals. For example, botanists studying pollination may be unaware of some modern advances in animal physiology and behaviour which undermine a typological view of pollination systems. Similarly, botanists studying loss of seeds to granivores may be unaware of details of animal behaviour that can cause granivores to benefit the plants in surprising ways. These examples illustrate how improved communication with zoology can enrich plant ecology. To remove barriers to communication we suggest some individual and collective actions that plant ecologists can take.     

All is not loss: plant biodiversity in the anthropocene

Anthropogenic global changes in biodiversity are generally portrayed in terms of massive native species losses or invasions caused by recent human disturbance. Yet these biodiversity changes and others caused directly by human populations and their use of land tend to co-occur as long-term biodiversity change processes in the Anthropocene. Here we explore contemporary anthropogenic global patterns in vascular plant species richness at regional landscape scales by combining spatially explicit models and estimates for native species loss together with gains in exotics caused by species invasions and the introduction of agricultural domesticates and ornamental exotic plants. The patterns thus derived confirm that while native losses are likely significant across at least half of Earth's ice-free land, model predictions indicate that plant species richness has increased overall in most regional landscapes, mostly because species invasions tend to exceed native losses. While global observing systems and models that integrate anthropogenic species loss, introduction and invasion at regional landscape scales remain at an early stage of development, integrating predictions from existing models within a single assessment confirms their vast global extent and significance while revealing novel patterns and their potential drivers. Effective global stewardship of plant biodiversity in the Anthropocene will require integrated frameworks for observing, modeling and forecasting the different forms of anthropogenic biodiversity change processes at regional landscape scales, towards conserving biodiversity within the novel plant communities created and sustained by human systems.     

不受欢迎的生物多样性：香港的外来植物物种

香港早在19世纪中叶开始就有外来植物入侵的记录,迄今为止,已发现多达238种已归化的外来或怀疑为外来的植物,其中又以薇甘菊（Mikania micrantha)、五爪金龙（Ipomoea cairica)、假臭草（Eupatorium catarium)、大黍（Panicum maximum)等最常见,外来植物最常见于受人为干扰的生境,例如荒废农田及路旁等,而较少在天然林地生境及贫瘠的灌草丛中发现,外来植物的对本地生态系统的影响主要局限于低地生境,它们常形成单优种群,减少了生境及贫瘠的灌草丛中发现,外来植物对本地生态系统的影响主要局限于低地生境,它们常形成单优种群,减少少了生境及动植物的多样性,外来动物对香港原生植物影响最大的是于20世纪70年代入侵的松树线虫（Bur-saphelenchus xylophilus)。外来的脊椎动物也有可能对香港的植物被演替产生影响,目前香港的外来植物当中,有些在大陆较少分布或没有记录,作为华南最大的港口,香港对外来物种的引入扮演着重要的角色,因此制定控制外来种在香港及华南地区的引入及传播的政策及措施非常重要。