Relative abundance and size of coastal sharks derived from commercial shark longline catch and effort data

In the north-west Atlantic Ocean, stock assessments conducted for some commercially harvested coastal sharks indicate declines from 64 to 80% with respect to virgin population levels. While the status of commercially important species is available, abundance trend information for other coastal shark species in the north-west Atlantic Ocean are unavailable. Using a generalized linear modelling (GLM) approach, a relative abundance index was derived from 1994 to 2009 using observer data collected in a commercial bottom longline fishery. Trends in abundance and average size were estimated for bull shark Carcharhinus leucas, spinner shark Carcharhinus brevipinna, tiger shark Galeocerdo cuvier and lemon shark Negaprion brevirostris. Increases in relative abundance for all shark species ranged from 14% for C. brevipinna, 12% for C. leucas, 6% for N. brevirostris and 3% for G. cuvier. There was no significant change in the size at capture over the time period considered for all species. While the status of shark populations should not be based exclusively on abundance trend information, but ultimately on stock assessment models, results from this study provide some cause for optimism on the status of these coastal shark species.     

Seasonal changes in the abundance of Microcrustacea in a small pond

Sampling methods, and methods used in extracting, identifying and counting the Microcrustacea in samples are outlined. Numbers of parthenogenetic females and young stages of Daphnia obtusa were highest from March/June to Sept./Nov., with a trough in July. Ephippial females were recorded during some or all of the months from March to Nov. with two numerical maxima, one in early summer and one in autumn. Males were present during the same period as ephippial females. Naupliar, copepodid and adult stages of Cyclops strenuus strenuus were recorded in every month; numbers of all three stages tended to be high from March to Nov. and low from Dec. to Feb. Females were present in smaller sumber than males. Females with eggs sacs occurred every month with two peaks of abundance in April–July and Oct. Adult Canthocamptus staphylinus were absent during the summer/early autumn from June/July/Aug. to Sept./Oct. Numbers were highest from Nov. to May/June with a peak in spring. Females carrying an egg sac were recorded each month with the highest proportion occurring sometime in the period Feb. to May. Possibly two peaks, one in early summer and one in autumn, of total numbers of Cyclocypris ovum were recorded. Comparisons with other available information on the life-cycle of the species are made. The effects on the species of a six-week period of drought in the autumn of 1969 are considered.     

Spiral valve parasites of blue and common thresher sharks as indicators of shark feeding behaviour and ecology

This study documented the parasite faunas of the spiral valves of blue sharks Prionace glauca (L. 1758) and common thresher sharks Alopias vulpinus (Bonnaterre, 1788) caught in the California Current Large Marine Ecosystem (CCLME) north of the Mexican border. The spiral valves of 18 blue and 19 thresher sharks caught in the CCLME from 2009 to 2013 were examined for parasites. Seven parasite taxa were found in blue sharks and nine in threshers. The tetraphyllidean cestode Anthobothrium sp. (78% prevalence) was the most common parasite in blue sharks, and the phyllobothriid cestode Paraorygmatobothrium sp. (90% prevalence) was the most common in threshers. An adult nematode of the genus Piscicapillaria was found in threshers for the first time and may be a new species. Adult individuals of Hysterothylacium sp. were found in both shark species. The adult acanthocephalan Rhadinorhynchus cololabis and remains of the parasitic copepod Pennella sp. – both parasites of Pacific saury, Cololabis saira – were found in the intestines of threshers, indicating recent feeding on saury. This study paves the way for a more comprehensive examination, including more samples and a wider variety of shark species, to provide a greater understanding of shark feeding behaviour and possibly provide information on shark population biology.     

Reef sharks exhibit site-fidelity and higher relative abundance in marine reserves on the Mesoamerican Barrier Reef

Carcharhinid sharks can make up a large fraction of the top predators inhabiting tropical marine ecosystems and have declined in many regions due to intense fishing pressure. There is some support for the hypothesis that carcharhinid species that complete their life-cycle within coral reef ecosystems, hereafter referred to as “reef sharks”, are more abundant inside no-take marine reserves due to a reduction in fishing pressure (i.e., they benefit from marine reserves). Key predictions of this hypothesis are that (a) individual reef sharks exhibit high site-fidelity to these protected areas and (b) their relative abundance will generally be higher in these areas compared to fished reefs. To test this hypothesis for the first time in Caribbean coral reef ecosystems we combined acoustic monitoring and baited remote underwater video (BRUV) surveys to measure reef shark site-fidelity and relative abundance, respectively. We focused on the Caribbean reef shark (Carcharhinus perezi), the most common reef shark in the Western Atlantic, at Glover''s Reef Marine Reserve (GRMR), Belize. Acoustically tagged sharks (N = 34) were detected throughout the year at this location and exhibited strong site-fidelity. Shark presence or absence on 200 BRUVs deployed at GRMR and three other sites (another reserve site and two fished reefs) showed that the factor “marine reserve” had a significant positive effect on reef shark presence. We rejected environmental factors or site-environment interactions as predominant drivers of this pattern. These results are consistent with the hypothesis that marine reserves can benefit reef shark populations and we suggest new hypotheses to determine the underlying mechanism(s) involved: reduced fishing mortality or enhanced prey availability.     

桃园节肢动物群落相对丰盛度的季节动态研究

以合肥市杏花林果科技示范园为例,研究了桃园节肢动物群落物种的组成和数量,对植食类、捕食类、寄生类和其它类4种功能类群的相对丰盛度作了详尽的阐述。捕食类同植食类的相对丰盛度变化趋势一致,说明捕食类节肢动物是桃树生长期植食类害虫的重要天敌。     

Habitat factors affecting site occupancy and relative abundance of four-horned antelope

The four-horned antelope is endemic to the Indian sub-continent. It was formerly distributed widely in deciduous forests throughout its range, but the current distributional patterns of this low-density species are largely unknown and conservation efforts are hampered by the lack of information on species–habitat relationships. We investigated the habitat factors influencing four-horned antelope occurrence and abundance in Bandipur National Park, an important four-horned antelope conservation site in India. Detection/non-detection data, collected under a systematic sampling framework, were used to test a priori hypotheses incorporating covariates believed to influence occurrence and abundance. The best fitting models for four-horned antelope occurrence and relative abundance reveal that the tree-savanna deciduous habitat sub-type, characterized by relatively open habitats with a lower tree density and a high degree of deciduousness, is most preferred by the species. Four-horned antelope conservation efforts in Bandipur National Park and other reserves should be focused on areas typified by tree-savanna habitats. Four-horned antelope occurrence was negatively related to the alien weed Lantana camara . The prolific spread of this weed in Indian deciduous forests is a likely threat.     

Characterization of microsatellite loci isolated from the blacktip shark and their utility in requiem and hammerhead sharks

We isolated and characterized 16 microsatellite loci from the blacktip shark, Carcharhinus limbatus, and tested cross‐species amplification in 11 Carcharhinus species and five additional shark genera. Thirty‐six (1.6%) and 180 (48%) colonies were positive for dinucleotide repeat motifs from unenriched and enriched libraries, respectively. Heterozygosities of polymorphic loci ranged from 0.04 to 0.96 with two to 22 alleles per locus. Amplification products were observed at nine to 13 loci (five to 11 of which where polymorphic) in 10 Carcharhinus species. Several loci were also polymorphic in each of the additional genera examined.     

Seasonal changes in the abundance and distribution of submerged aquatic vegetation in a highly managed coastal lagoon

The inflow of fresh water into coastal lagoons is a key factor influencing the structure and function of these ecosystems. Biscayne Bay, a coastal lagoon adjacent to the city of Miami, is located downstream of the Everglades ecosystem where the extensive water management system now in place has modified the historical hydrology, replacing groundwater and overland flows with pulsed releases from canals. In areas where canals discharge directly into littoral habitats, an environment with low-mean salinity and high-salinity variability is created. In this study, we characterize the salinity patterns of nearshore habitats (<500 m from shore) and document patterns of seasonal abundance and distribution of submerged aquatic vegetation (SAV) to evaluate the impacts of water management practices. Seagrasses were the principal component of the SAV community during the 2005 dry season (mean cover = 25.5%), while macroalgae dominated during the wet season (mean cover = 33.4%). The distribution and abundance of SAV were directly related to the tolerance of each taxon to salinity patterns. Seagrass species with high tolerance to low and variable salinity such as Halodule wrightii and Ruppia maritima were found only in canal-influenced areas and increased in abundance and spatial distribution in the wet season when freshwater inflow is highest. The dominance of rhizophytic macroalgae during the wet season was determined by the appearance and high abundance of Chara, a taxon commonly associated with freshwater environments. Thalassia testudinum, the most abundant seagrass species, was found throughout the study region, but decreased in abundance in the canal-influenced areas during the wet season when lower, more variable salinity resulted in lowered productivity. The data presented here showed a significant relationship between salinity patterns and the seasonal abundance and distribution of SAV. These findings support the use of SAV as appropriate indicators of changes in water quality resulting from future restoration projects associated with the Everglades Restoration Plan, which will once again modify the delivery of fresh water into littoral habitats with unknown ecological consequences. Handling editor: S. M. Thomaz     

The feeding ecology and relative abundance of mullet (Mugilidae) in Natal and Pondoland estuaries

An investigation of the feeding ecology of Mugilidae in Natal and Pondoland estuaries showed that although the diet of the eleven species is similar it varies from one estuary to another and is determined largely by the occurrence of particular food items on substrates of the preferred particle size of each species. The findings of this study support the conclusions reached by Blaber (1976) with regard to the partitioning of the food resource according to inorganic particle size. Particle sizes consumed by each species do not remain the same but vary according to locality. Within any one estuary the mullet species avoid interspecific competition by selecting particles of different sizes. The fish are always graded in the same order with regard to particle size. The relative abundance of the various species of mullet in Natal and Pondoland estuaries is probably not controlled by food or substrate requirements because most species are sufficiently flexible in their feeding ecology to cope with a wide variety of estuarine substrates.     

Discovery of a multispecies shark aggregation and parturition area in the Ba Estuary,Fiji Islands

Population declines in shark species have been reported on local and global scales, with overfishing, habitat destruction and climate change posing severe threats. The lack of species‐specific baseline data on ecology and distribution of many sharks, however, makes conservation measures challenging. Here, we present a fisheries‐independent shark survey from the Fiji Islands, where scientific knowledge on locally occurring elasmobranchs is largely still lacking despite the location's role as a shark hotspot in the Pacific. Juvenile shark abundance in the fishing grounds of the Ba Estuary (north‐western Viti Levu) was assessed with a gillnet‐ and longline‐based survey from December 2015 to April 2016. A total of 103 juvenile sharks identified as blacktip Carcharhinus limbatus (n = 57), scalloped hammerhead Sphyrna lewini (n = 35), and great hammerhead Sphyrna mokarran (n = 11) sharks were captured, tagged, and released. The condition of umbilical scars (68% open or semihealed), mean sizes of individuals (±SD) (C. limbatus: 66.5 ± 3.8 cm, S. lewini: 51.8 ± 4.8 cm, S. mokarran 77.4 ± 2.8 cm), and the presence of these species over recent years (based on fishermen interviews), suggest that the Ba Estuary area is a critical habitat for multiple species that are classified as “Near Threatened” or “Endangered.” Specifically, the area likely acts as a parturition ground over the studied period, and potentially as a subsequent nursery area. We identified subareas of high abundance and found that temperature, salinity and depth acted as small‐scale environmental drivers of shark abundance. The data suggests a tendency for species‐specific spatial use, both horizontally (i.e., between sampling areas) and vertically (i.e., across the water column). These results enhance the understanding of shark ecology in Fiji and provide a scientific basis for the implementation of local conservation strategies that contribute to the protection of these threatened species.     

Influence of teleost abundance on the distribution and abundance of sharks in Florida Bay, USA

Understanding the factors that influence the distribution and abundance of predators, including sharks, is important for predicting the impacts of human changes to the environment. Such studies are particularly important in Florida Bay, USA where there are planned large-scale changes to patterns of freshwater input from the Everglades ecosystem. Studies of many marine predators suggest that links between predator and prey habitat use may vary with spatial scale, but there have been few studies of the role of prey distribution in shaping habitat use and abundance of sharks. We used longline catches of sharks and trawls for potential teleost prey to determine the influence of teleost abundance on shark abundance at the scale of regions and habitats in Florida Bay. We found that shark catch per unit effort (CPUE) was not linked to CPUE ofteleosts at the scale of sampling sites, but shark CPUE was positively correlated with the mean CPUE for teleosts within a region. Although there does not appear to be a strong match between the abundance of teleosts and sharks at small spatial scales, regional shark abundance is likely driven, at least partially, by the availability of prey. Management strategies that influence teleost abundance will have cascading effects to higher trophic levels in Florida Bay. Electronic Supplementary Material is available for this article at     

Phylogeography and conservation of the bull shark (Carcharhinus leucas) inferred from mitochondrial and microsatellite DNA

The bull shark (Carcharhinus leucas) is a widely distributed, large coastal shark species known to travel long distances. These characteristics, coupled with the species?? long life span and late age of maturity, would lead one to predict significant global genetic exchange among bull shark populations. By contrast, data show localized depletion in some areas of large coastal shark fisheries, indicating some geographic isolation may exist. We examined genetic variation in the control region of mitochondrial DNA and at five nuclear microsatellite loci in bull sharks sampled from the western Atlantic to investigate the degree of population subdivision. The average per sample haplotype and nucleotide diversity in the mtDNA (0.51 ± 0.26 and 0.12% ± 0.12, respectively) and expected heterozygosity (0.84) in the microsatellite loci contrast sharply in having lower and higher values (respectively) relative to many other shark species. Significant structure exists between the Brazilian and all northern populations at the mtDNA control region (pairwise ??_ST > 0.8, P < 0.001), but not at the nuclear microsatellite loci. Adjacent northern populations show weak to no genetic differentiation for both markers. These results are congruent with restricted maternal gene flow between populations caused by female site fidelity to nursery areas. We estimate the current effective population size to be around 160,000 and 221,000 individuals for the southern and northern Atlantic populations, respectively. The philopatric habits and the relatively low levels of mtDNA genetic diversity observed in bull sharks must be considered in the conservation of this species. Our results indicate that effective bull shark management strategies will require local, regional, and international attention and cooperation.     

Seasonal changes in the abundance of autotrophic picoplankton and some environmental factors in hypereutrophic Furuike Pond

Seasonal change in the abundance of autotrophic picoplankton (APP) was investigated once or twice a week in relation to some environmental variables in a hypereutrophic pond, from July 1999 to June 2000. Cell density of APP ranged between 0.3×10⁵ and 10.1×10⁵ cells ml^–1, overlapping the lower range of APP abundances given in the literature for hypereutrophic systems. The pattern of seasonal change in concentration of dissolved inorganic phosphorus (0.3–20.3 mol P l^–1) was similar to that of cell density of APP, suggesting that phosphorus limitation on APP abundance. By contrast, nitrogen limitation seemed unlikely since the pattern of seasonal change in concentration of dissolved inorganic nitrogen was different from that of APP cell density. We could not find any coupled oscillations between APP abundance and heterotrophic nanoflagellates, or between that of APP and ciliates. The dominant ciliate taxa, based on their cell densities, were Cinetochilum margaritaceum, Cyclidium glaucoma, Halteria grandinella, Strobilidium sp. and Urotricha spp. The relative contribution of the <2 m fraction to total chlorophyll concentration was seasonally high (up to 16.2%), indicating seasonal importance of APP abundance as food for heterotrophs.     

Maneuvering in juvenile carcharhinid and sphyrnid sharks: the role of the hammerhead shark cephalofoil

The peculiar head morphology of hammerhead sharks has spawned a variety of untested functional hypotheses. One of the most intuitively appealing ideas is that the anterior foil acts, as in canard-winged aircraft, to increase maneuverability. We tested this hypothesis by determining whether juveniles of two hammerhead species (Sphyrna tiburo and S. lewini) turn more sharply, more often, and with greater velocity than a juvenile carcharhinid shark (Carcharhinus plumbeus). Although the hammerheads were more maneuverable, further investigation revealed that they do not roll their body during turns, suggesting that the cephalofoil does not act as a steering wing. We also show that hammerhead sharks demonstrate greater lateral flexure in a turn than carcharhinids, and that this flexibility may be due to cross sectional shape rather than number of vertebrae.     

Seasonal fluctuations of resource abundance and avian feeding guilds across forest–farmland boundaries in tropical Africa

Seasonal fluctuations in climatic factors are expected to increase in future decades. However, little is known about the response of tropical species communities to seasonal fluctuations in climate and resource availability, particularly across different habitat types. We examined the relationship between spatio‐temporal fluctuations in the abundance of fruits and invertebrates and two avian feeding guilds, i.e. frugivores and insectivores, in forest and farmland habitats in western Kenya. Fruits and invertebrates fluctuated substantially throughout the year, but seasonal fluctuations were asynchronous between the two habitat types. Species richness and total abundance of frugivores and insectivores also fluctuated strongly and were closely related to the abundance of their respective resources. Frugivore species richness fluctuated anti‐cyclical in forest and farmland habitats, suggesting that several frugivorous species tracked fruit resources across habitat boundaries. In contrast, insectivorous bird richness fluctuated synchronously in the two habitat types, suggesting a lack of local‐scale movements across habitat boundaries. We conclude that bird communities strongly respond to seasonal fluctuations in resource availability, but responses differ between feeding guilds. While frugivores seem to respond flexibly to seasonal fluctuations, for instance by tracking fruit resources across habitat boundaries, insectivorous birds appear to be more susceptible to the expected increase in seasonal fluctuations in resource availability.     

Climate change causes rapid changes in the distribution and site abundance of birds in winter

Detecting coherent signals of climate change is best achieved by conducting expansive, long‐term studies. Here, using counts of waders (Charadrii) collected from ca. 3500 sites over 30 years and covering a major portion of western Europe, we present the largest‐scale study to show that faunal abundance is influenced by climate in winter. We demonstrate that the ‘weighted centroids’ of populations of seven species of wader occurring in internationally important numbers have undergone substantial shifts of up to 115 km, generally in a northeasterly direction. To our knowledge, this shift is greater than that recorded in any other study, but closer to what would be expected as a result of the spatial distribution of ecological zones. We establish that year‐to‐year changes in site abundance have been positively correlated with concurrent changes in temperature, but that this relationship is most marked towards the colder extremities of the birds' range, suggesting that shifts have occurred as a result of range expansion and that responses to climate change are temperature dependent. Many attempts to model the future impacts of climate change on the distribution of organisms, assume uniform responses or shifts throughout a species' range or with temperature, but our results suggest that this may not be a valid approach. We propose that, with warming temperatures, hitherto unsuitable sites in northeastern Europe will host increasingly important wader numbers, but that this may not be matched by declines elsewhere within the study area. The need to establish that such changes are occurring is accentuated by the statutory importance of this taxon in the designation of protected areas.     

Annual changes in structural complexity of understory vegetation and relative abundance ofPeromyscus leucopus in fragmented habitats

Greater structural complexity of understory vegetation may be one factor that contributes to the negative relation ship between density of generalist rodents (eg,Peromyscus leucopus Rafinesque, 1818) and forest patch area; however, this hypothesis is difficult to test. We removed the problem of multicollinearity among variables by analyzing changes in structural complexity and relative abundance ofP. leucopus in 15 forest patches (1.3–200 ha) over a 3-yr period. We found that an in crease in the relative abundance ofP. leucopus was associated with an increase in structural complexity of understory vegetation in the same patches between years. Structural complexity of the understory was greater in smaller forest patches which we speculate may be influenced by moisture. It is possible that understory vegetation provides greater food availability and/or cover from some predators in small patches, but the specific mechanism(s) remains unclear. Multiple factors can potentially influence populations ofP. leucopus, but our results provide strong evidence that structural complexity of understory vegetation positively in fluences relative abundance ofP. leucopus in fragmented habitats.     

Estimating changes in species abundance from occupancy and aggregation

Predicting the change in abundance is pivotal for evaluating species’ current conservation status and population viability. Empirical works have suggested that species with an increasing abundance have a more aggregated distribution than those with a declining abundance (namely, the change-aggregation hypothesis, CAH). Here we introduced an improved negative binomial distribution model of the occupancy-abundance relationship (OAR) to estimate the change in abundance from changes in occupancy or aggregation. Analysis of the model suggests that (i) in general the change in abundance is synchronized with the change in occupancy when the level of environmental heterogeneity remains constant, and (ii) there could exist a threshold of the population density above which the CAH is no longer valid. Tests using data of epigaeic ants in Fynbos of South Africa collected from different seasons and macro-invertebrates from different localities in streams of central Spain verified these model propositions and thus support the use of this model as a monitoring method for assessing species persistence. Results suggest that the change in abundance can be estimated from the change in occupancy often obtained from cost-efficient presence-absence records, and a revision of the traditional CAH is necessary to capture the threshold phenomenon in the change-aggregation relationship. This work thus signifies the use of the three distinct but related concepts of population structure (i.e. occupancy, abundance and aggregation) in conservation biology.