The Effect of Categorization on a Simple Analysis of Variance Model

Many statistical procedures assume a continuous model in spite of the fact that observations are necessarily discrete. Here we consider a simple ANOVA model—one factor with fixed effects—and assess the effect of categorisation by simulating sizes and calculating asymptotic relative efficiencies. Even for severe categorisation the effects are small.     

The Probability of a Negative Linear Combination of Independent Mean Squares

SATTERTHWAITE'S (1941) approximation of the distribution of a linear combination, of independent mean squares is a commonly used technique in the analysis of variance. Confidence intervals and test statistics based on this approximation require that be positive. In this article, the probability that will be negative is considered in situations in which the mean squares are associated with a general balanced mixed model. Expressions are given for exact and approximate values of this probability in terms of the expected values and degrees of freedom of the mean squares. An example is presented to illustrate the implementation of the proposed methodology.     

Effect of amyloids on the vesicular machinery: implications for somatic neurotransmission

Certain neurodegenerative diseases are thought to be initiated by the aggregation of amyloidogenic proteins. However, the mechanism underlying toxicity remains obscure. Most of the suggested mechanisms are generic in nature and do not directly explain the neuron-type specific lesions observed in many of these diseases. Some recent reports suggest that the toxic aggregates impair the synaptic vesicular machinery. This may lead to an understanding of the neuron-type specificity observed in these diseases. A disruption of the vesicular machinery can also be deleterious for extra-synaptic, especially somatic, neurotransmission (common in serotonergic and dopaminergic systems which are specifically affected in Alzheimer''s disease (AD) and Parkinson''s disease (PD), respectively), though this relationship has remained unexplored. In this review, we discuss amyloid-induced damage to the neurotransmitter vesicular machinery, with an eye on the possible implications for somatic exocytosis. We argue that the larger size of the system, and the availability of multi-photon microscopy techniques for directly visualizing monoamines, make the somatic exocytosis machinery a more tractable model for understanding the effect of amyloids on all types of vesicular neurotransmission. Indeed, exploring this neglected connection may not just be important, it may be a more fruitful route for understanding AD and PD.     

Effect of natural exogenous antioxidants on aging and on neurodegenerative diseases

Abstract

Aging and neurodegenerative diseases share oxidative stress cell damage and depletion of endogenous antioxidants as mechanisms of injury, phenomena that are occurring at different rates in each process. Nevertheless, as the central nervous system (CNS) consists largely of lipids and has a poor catalase activity, a low amount of superoxide dismutase and is rich in iron, its cellular components are damaged easily by overproduction of free radicals in any of these physiological or pathological conditions. Thus, antioxidants are needed to prevent the formation and to oppose the free radicals damage to DNA, lipids, proteins, and other biomolecules. Due to endogenous antioxidant defenses are inadequate to prevent damage completely, different efforts have been undertaken in order to increase the use of natural antioxidants and to develop antioxidants that might ameliorate neural injury by oxidative stress. In this context, natural antioxidants like flavonoids (quercetin, curcumin, luteolin and catechins), magnolol and honokiol are showing to be the efficient inhibitors of the oxidative process and seem to be a better therapeutic option than the traditional ones (vitamins C and E, and β-carotene) in various models of aging and injury in vitro and in vivo conditions. Thus, the goal of the present review is to discuss the molecular basis, mechanisms of action, functions, and targets of flavonoids, magnolol, honokiol and traditional antioxidants with the aim of obtaining better results when they are prescribed on aging and neurodegenerative diseases.     

Stability and Characteristics of Spatial Description Parameters for Nematode Populations

The parameters of Taylor''s Power Law (s² = am^b) relating variance (s²) to mean population level (m) were acceptably stable in different fields with similar cropping systems. Values of both a and b parameters varied with nematode species. The value of a was a function of sample size (number of cores) and was characterized for each species. The value of b was stable across sample size and reflective of the life history strategy of the species. The relationship between the economic threshold and sampling intensity required to allow management decisions, with specified levels of risk, indicated the need for improved sampling technology.     

The neural and cognitive correlates of aimed throwing in chimpanzees: a magnetic resonance image and behavioural study on a unique form of social tool use

It has been hypothesized that neurological adaptations associated with evolutionary selection for throwing may have served as a precursor for the emergence of language and speech in early hominins. Although there are reports of individual differences in aimed throwing in wild and captive apes, to date there has not been a single study that has examined the potential neuroanatomical correlates of this very unique tool-use behaviour in non-human primates. In this study, we examined whether differences in the ratio of white (WM) to grey matter (GM) were evident in the homologue to Broca's area as well as the motor-hand area of the precentral gyrus (termed the KNOB) in chimpanzees that reliably throw compared with those that do not. We found that the proportion of WM in Broca's homologue and the KNOB was significantly higher in subjects that reliably throw compared with those that do not. We further found that asymmetries in WM within both brain regions were larger in the hemisphere contralateral to the chimpanzee's preferred throwing hand. We also found that chimpanzees that reliably throw show significantly better communication abilities than chimpanzees that do not. These results suggest that chimpanzees that have learned to throw have developed greater cortical connectivity between primary motor cortex and the Broca's area homologue. It is suggested that during hominin evolution, after the split between the lines leading to chimpanzees and humans, there was intense selection on increased motor skills associated with throwing and that this potentially formed the foundation for left hemisphere specialization associated with language and speech found in modern humans.     

Effect of Quadrat and Core Sizes on Determining the Spatial Pattern of Criconemella sphaerocephalus

An unmanaged pasture was sampled on four occasions (A, B, C, D) with five different quadrat sizes for Criconemella sphaerocephalus by removing a constant soil core volume of 75 cm³ (A) and 300 cm³ (C) from increasing quadrat areas of 0.5-8 m², and removing soil core volumes of increasing size - 75-1,200 cm³ (B) and 300-4,800 cm³ (D) - proportionally with an increase in quadrat area (0.5-8 m²). Frequency counts of C. sphaerocephalus were fitted to six probability distributions. The index of aggregation (b) for Taylor''s power law and Morisita''s index of dispersion were also calculated where appropriate. Twelve of nineteen of the sampling combinations were best described by negative binomial distribution (P = 0.05). Criconemella sphaerocephalus appeared more highly aggregated when sampled with constant soil core volumes (A and C) than from increasing soil core volumes (B and D) based on Taylor''s index of aggregation (b). Morisita''s index of dispersion indicated aggregation at the smallest quadrat area (0.5 m²) for all sampling occasions (A, B, C, D).     

The role of predation and competition in determining the distribution of common bream,roach and white bream in Dutch eutrophic lakes

Synopsis Most of the lakes in The Netherlands are turbid and without vegetation. This is regarded as the result of increasing eutrophication within the last decades. Under these conditions common bream, roach, and white bream are the most common cyprinids. In six shallow (1–3 m), wind exposed lakes the abundance of common bream and roach was linked to the abundance of pikeperch; bream dominated when pikeperch was abundant, but when the latter species was rare, roach was dominant and the biomass of bream was reduced. The biomass of white bream was always relatively low. In lake Tjeukemeer the distribution of roach < 20 cm fork length (FL) and bream was also related to the distribution of pikeperch. Only roach > 20 cm FL managed to coexist with pikeperch in the open water area, whereas roach < 20 cm was confined to the littoral zone where pikeperch was nearly absent. Bream occurred mainly in the open water and avoided the littoral zone where it competed with roach. White bream occupied an intermediate position, occurring in relatively low density both in the littoral zone and in open water. The importance of predation and competition in determining the distribution and abundance of roach and common bream in the eutrophic lakes of The Netherlands is discussed.     

The effect of buffers and chelators on the reaction of luminol with Fenton's reagent near neutral pH

The chemiluminescence of the system luminol +Fe²⁺ + H₂O₂ was measured in aqueous buffer at pH 7.2. In veronal (5,5-diethybarbiturate) buffer, the luminescence is strongly quenched by ethanol and mannitol, but only weakly by t-butanol, benzoate and superoxide dismutase (SOD); complexing Fe²⁺ with 1,10-phenanthroline or 2,2′-dipyridyl causes a decrease of light production that can be partially obviated by the simultaneous addition of SOD. In phosphate buffer, the luminescence is higher than in veronal and it is efficiently quenched by all four OH · quenchers and by SOD. In Tris buffer, no light production is observed as long as the Fe²⁺ is not complexed. When Fe²⁺ is complexed by pyrophosphate or phytate, there is a strong chemiluminescence in all three buffers, which is quenched by all four OH · quenchers and by SOD. When Fe²⁺ is complexed by EDTA or DTPA, very little luminescence is observed. The luminol analogue phthalhydrazide, which was suggested by Merényi and Lind as a reliable OH · detector, can replace luminol only in phosphate buffer, and thus turns out to be very specific indeed for free OH ·.     

The use of penrose's C for an intra- and inter-population analysis of quantitative dermatoglyphic traits

Results of a part of multidisciplinary studies in six villages on the island of Hvar (Yugoslavia) are presented. Six quantitative properties of dermatoglyphics were analysed (TRC, PII, a-b, b-c and c-d ridge counts, and atd angle). “Biological distances” among the surveyed couples from all six villages were analysed using Penrose's C²_H, and its components: C²_Q and (v-l/v)C²_Z with regard to sex and possibility of determining the direction of endogamy or exogamy. Significant correlation between “geographical distances” and (v-l/v)C²_Z is obtained for males, indicating that the social organisation in the examined rural population, from the point of view of demography, has some influence on the distribution of the dermatoglyphical characters.     

The impact of homologous and heterologous nurse cells on the division capability of sparsely plated cells

The growth-promoting effects of nurse cells of carrot, tomato, patato, maize, bean, carnation and two species of tobacco were studied on carrot, tomato, tobacco and potato cells plated at low densities. In an area immediately below the nurse cells the plating efficiency was very high and found to be independent of cell density. In an area outside the nurse cells, in some cases, the plating efficiency tended to be much higher in combinations with cells from a heterologous source as compared with those from a homologous source. Moreover, in the same area with some combinations the plating efficiency decreased when cell density was lowered, while with other combinations this phenomenon did not occur. This decrease was independent of the absolute value of plating efficiency. In experiments in which the concentration of conditioning factors was presumably changed, no significant difference in the plating efficiency was noticed. We therefore suggest that different plating efficiencies observed with heterologous nurse cells were not due to a higher level of conditioning factors, but rather to the production of different types of conditioning factors that are presumably degraded with different efficiency.     

Observations on in vitro development of bovine morulae in Ham's F-10 and Dulbecco's phosphate buffered saline supplemented with normal steer serum

This study was conducted to compare in vitro development of bovine morulae in Ham's F-10 and Dulbecco's phosphate buffered saline (D-PBS) media supplemented with 10% (v/v) normal steer serum. Fifty-three excellent and good embryos were obtained by superovulating 15 non-lactating Holstein cows. Embryos were placed randomly in culture with Ham's F-10 or D-PBS media and development was recorded at 12-h intervals for the duration of culture. All embryos reached early blastocyst, blastocyst and expanded blastocyst stage. Nineteen of 27 embryos (70.1%) cultured in Ham's F-10 developed to hatched blastocyst stage in contrast to three out of 26 in D-PBS (11.5%). The mean developmental scores at 24, 48, 72, 96 and 120 h of culture were significantly (P<0.001) higher for embryos cultured in Ham's F-10. Also, the mean times to reach early blastocyst (25.84 +/- 6.65 vs 46.67 +/- 9.99 h), blastocyst (44.57 +/- 11.45 vs 61.89 +/- 16.62 h) and expanded blastocyst stage (65.00 +/- 13.20 vs 73.41 +/- 15.80 h) were significantly (P<0.001) shorter for embryos cultured in Ham's F-10. No difference was observed in the mean time to reach hatching (90.00 +/- 10.85 vs 84.00 +/- 16.97 h) and hatched blastocyst stage (97.26 +/- 18.71 vs 96.00 +/- 0.00 h). The results obtained support the concept that Ham's F-10 and normal steer serum provide for optimal bovine embryo development and suggest that 10% normal steer serum could be used as a protein supplement with D-PBS for short term storage and culture of bovine embryos.     

The differential reaction of histamine and N tau-methylhistamine with Pauly's diazo reagent: application to assay of histamine N-methyltransferase activity

A simple nonradioisotopic fluorescent method for assay of histamine N-methyltransferase (HMT) activity was developed. After termination of the HMT reaction, the remaining excess substrate, histamine, was degraded by Pauly 's diazo reagent, whereas the product, N tau-methylhistamine (N- MeHA ), was not degraded by the reagent. Then the mixture was applied to high-performance liquid chromatography under conditions in which N- MeHA was not separated from histamine, and N- MeHA was measured fluorometrically by condensation with o-phthalaldehyde. The method would be convenient for measurement of HMT activity during enzyme purification.     

Influx流式仪分选肺腺癌A549细胞SP亚群的条件优化

目的：通过分选肺腺癌A549细胞的侧群细胞（side population cells,SP）,了解影响Influx分选SP的各种因素,为成功分选其他肿瘤细胞的SP亚群提供方法参考.方法：（1）细胞的制备：取对数生长期的细胞,制备单细胞悬液,用Hoechst33342及PI标记染色,同时设计维拉帕米对照组;（2）最佳分选喷嘴的确定：根据对数生长期的A549细胞处于不同的分裂时象的细胞大小,预实验确定最佳分选喷嘴;（3）光信号的调试：用RainbowBeads优化670/30[355]、460/50[355]荧光信号和FSC散射光信号,使光信号最强且变异系数（coefficient ofvariation,CV）最小.（4）最佳液滴延迟的确定：调节振荡频率（frequency）找出最佳液流断点位置,调节振幅（ampitude）优化侧液流信号直到两侧液流信号最稳定,Delay Calculator自动计算液滴延迟,根据Accudrop Beads的分选效果确定最佳液滴延迟;（5）其他指标的调整：调节液滴的充电电压（drop charge）和分选装置的X、Y轴坐标,使测试分选液滴准确达到分选装置中;设置分选参数,分选目的细胞群.结果：同一批次处理的A549肺腺癌细胞,100 μm的喷嘴为分选A549肺腺癌SP亚群的最佳喷嘴;CV值校正后SP比例为19.7％,提高了6％;液滴延迟校正后,其分选效率（efficiency）提高了15％,分选纯度（purity）提高了23％;10 μg/mL的Hoechst3342染色,其SP比例是5μg/mL染色的5倍以上;细胞浓度越稀,分选效率和分选纯度相应提高;活细胞比例越高,SP比例越高.结论：合适的喷嘴大小,是保证高分选效率和高分选纯度的基础;仪器较小的CV值和较精确的液滴延迟、合理的Hoechst33342染料浓度、较高的细胞存活率和适中的细胞浓度是保证高分选效率和高分选纯度的的关键;通过平衡上述影响分选的因素才可能得到最佳的分选效果.     

The importance of phylogenetic scale in tests of Bergmann's and Rapoport's rules: lessons from a clade of South American lizards

We tested for the occurrence of Bergmann's rule, the pattern of increasing body size with latitude, and Rapoport's rule, the positive relationship between geographical range size and latitude, in 34 lineages of Liolaemus lizards that occupy arid regions of the Andean foothills. We tested the climatic-variability hypothesis (CVH) by examining the relationship between thermal tolerance breadth and distribution. Each of these analyses was performed varying the level of phylogenetic inclusiveness. Bergmann's rule and the CVH were supported, but Rapoport's rule was not. More variance in the data for Bergmann's rule and the CVH was explained using species belonging to the L. boulengeri series rather than all species, and inclusion of multiple outgroups tended to obscure these macroecological patterns. Evidence for Bergmann's rule and the predicted patterns from the CVH remained after application of phylogenetic comparative methods, indicating a greater role of ecological processes rather than phylogeny in shaping the current species distributions of these lizards.     

Effect of initial size on subsequent growth and carcass characteristics of divergently selected channel catfish

Summary Two experiments were conducted simultaneously to determine (1) if fast-growing fingerlings of channel catfish, Ictalurus punctatus, could be identified by simple visual selection of body size and (2) if initial size advantages influenced subsequent growth and carcass traits of divergently selected channel catfish. Exp. 1 included large (L), medium (M), and small (S) fingerling sizes from each of the control (C), selected upward (+) and selected downward (–) lines for body weight. Exp. 2 included all fmgerlings of the same size (25±5 g) from the 3 lines. Catfish from the L size-class, within each full-sib family in each line, were consistently heavier and longer than M and S size-classes throughout the 53-week experimental period. Fingerlings from the M size-class were also superior in growth to those from the S size-class. Catfish from the + line exceeded those from the C and –lines in body weight and total length at the conclusion of Exp. 1 but not in Exp. 2. This was attributed to the selection of equal size fmgerlings in Exp. 2 which may have excluded fingerlings with the best growth potential from the + body weight line. Results of the two experiments combined indicated that one generation of divergent selection has created genetic differences among lines of channel catfish.Supported by State and Hatch funds allocated to the Georgia Agricultural Experiment Station     

The effect of reciprocal-space sampling and basis set quality on the calculated conductance of a molecular junction

We perform density functional theory and non-equilibrium Green's function calculations of the conductance of a gold wire and a 1,4-phenylenedimethanethiol (XYL) molecule adsorbed between Au(111) electrodes using the TranSIESTA software package. The effect of varying different computational parameters is investigated. We find that the conductance is more sensitive to the reciprocal-space sampling grid than the quality of the basis set employed. The conductance can vary up to a factor of five as a result of the choice of computational parameters. We report a set of computational parameters that yields a well-converged conductance value.     

The effect of scale-free topology on the robustness and evolvability of genetic regulatory networks

We investigate how scale-free (SF) and Erd?s-Rényi (ER) topologies affect the interplay between evolvability and robustness of model gene regulatory networks with Boolean threshold dynamics. In agreement with Oikonomou and Cluzel (2006) we find that networks with SF_in topologies, that is SF topology for incoming nodes and ER topology for outgoing nodes, are significantly more evolvable towards specific oscillatory targets than networks with ER topology for both incoming and outgoing nodes. Similar results are found for networks with SF_both and SF_out topologies. The functionality of the SF_out topology, which most closely resembles the structure of biological gene networks (Babu et al., 2004), is compared to the ER topology in further detail through an extension to multiple target outputs, with either an oscillatory or a non-oscillatory nature. For multiple oscillatory targets of the same length, the differences between SF_out and ER networks are enhanced, but for non-oscillatory targets both types of networks show fairly similar evolvability. We find that SF networks generate oscillations much more easily than ER networks do, and this may explain why SF networks are more evolvable than ER networks are for oscillatory phenotypes. In spite of their greater evolvability, we find that networks with SF_out topologies are also more robust to mutations (mutational robustness) than ER networks. Furthermore, the SF_out topologies are more robust to changes in initial conditions (environmental robustness). For both topologies, we find that once a population of networks has reached the target state, further neutral evolution can lead to an increase in both the mutational robustness and the environmental robustness to changes in initial conditions.     

The dental awareness and needs of a Parkinson's disease population

The dental awareness and needs of a population with Parkinson's disease were assessed by means of postal questionnaires sent to members of Parkinson's disease societies of Belfast and London. A total of 228 valid replies were received representing a response rate of 31%. Results showed that dental problems were reported often, xerostomia and burning sensation being at least twice that of the general population. Satisfaction with dental care was high although it was significantly reduced in those with loose dentures and burning sensation. The results of this study support a greater participation by dentists in the planning and provision of healthcare for sufferer of Parkinson's disease.