Impacts of naturally-occurring soil fungi on seeds of meadow plants

Although soil fungi may represent an ecologically important cause of mortality of buried seeds, few studies have provided direct evidence of the pathogenicity of fungi colonizing seeds in natural habitats. In response, we conducted a series of experiments to investigate the impacts of soil fungi from a range of habitats on seeds of meadow plants. We compared the survival of seeds of four grasses in five habitats, and isolated fungi from these seeds. We then tested the pathogenicity of selected isolates against two standard sets of plant species: the original four grasses and a broad range of old field species. We found that the soil community contained a large variety of seed-colonizing fungi. Some, but not all, examples of these fungi caused seed mortality; others may be harmless commensals. Some of these isolates negatively affected a broad range of plant species, but others had a more restricted host range; as a result, pathogenicity varied depending upon the particular plant-fungus combination. Few between-habitat differences in seed survival were detected. Our results demonstrate that fungal seed pathogens are common, ubiquitous, and potentially lethal, but that their effects depend on the particular combination of fungus and plant species considered. This revised version was published online in June 2006 with corrections to the Cover Date.     

Factors related to diversity of decomposer fungi in tropical forests

Recent studies suggest that host-preferences are common among certain groups of tropical fungal decomposers but rare in others, and sometimes occur where we least expect them. Host preferences among microfungi and ascomycetes that decompose leaf litter are common but usually involve differences in relative frequencies more than presence/absence, so their diversity may be loosely correlated with species richness of host trees. Strong host-specificity appears to be rare among wood decomposer fungi, whereas characteristics of their substrata and habitat are very important for this group. Anthropogenic disturbance predisposed a tropical forest to subsequent hurricane damage, and the resulting direct and indirect effects on host diversity and habitat heterogeneity were reflected in the decomposer fungal community more than sixty years after the original disturbance. While species richness of dictyostelid slime molds and functional diversity of their bacterial prey increased with disturbance, the more diverse microfungi and ascomycetes were apparently negatively affected by disturbance.     

Effects of stock grazing on the ground invertebrate fauna of woodland remnants

Habitat fragmentation can leave formerly widespread habitat types represented by only small habitat ‘islands’, and the conservation of these remnants is frequently compromised by ongoing disturbance. In northern Victoria, grazing of woodland remnants by sheep and cattle has profound effects on the vegetation structure of the woodland by removing understorey and ground vegetation. To investigate the effects of grazing pressure on remnant grey box Eucalyptus microcarpa woodland in northern Victoria, we surveyed the ground invertebrate fauna in ungrazed woodland remnants, grazed woodland remnants, and grazed pasture. The number of invertebrates caught increased from ungrazed woodland to grazed woodland to pasture, but this increase was due primarily to the most abundant orders (Hymenoptera, Coleoptera and Aranaea), and two abundant taxa characteristic of pasture (Orthoptera and Dermaptera). In contrast, most of the less abundant orders followed the opposite pattern, and were caught in higher numbers (and as a higher proportion of the total catch) in ungrazed woodland. Ungrazed woodland had a more diverse ground invertebrate fauna, most likely due to the greater diversity of food and habitat resources provided by the less disturbed vegetation. The differences in invertebrate communities corresponded to differences in vegetation and litter layers. The reduction in biodiversity of remnants due to grazing has implications for conservation management of remnant woodland in agricultural landscapes.     

Biomass and nutrient concentrations of sporocarps produced by mycorrhizal and decomposer fungi in Abies amabilis stands

Summary Sporocarps and sclerotia were collected for a one-year period in 23- and 180-year-old Abies amabilis stands in western Washington. All sporocarps were classified and chemically analyzed for N, P, K, Ca, Mg, Na and Fe. Lactarius sp. and Cortinarius sp. contributed the largest proportion of the total annual epigeous sporocarp production in both stands. Annual epigeous production was 34 kg/ha in the young stand and 27 kg/ha in the mature stand. Hypogeous sporocarp production increased from 1 kg ha^-1 yr^-1 to 380 kg ha^-1 yr^-1 with increasing stand age. High sclerotia biomass occurred in the young (2,300 kg/ha) and mature (3,000 kg/ha) stands. Peak sclerotia and epigeous sporocarp biomass in the young stand and epigeous and hypogeous sporocarp biomass in the mature stand coincided with the fall peak of mycorrhizal root biomass.In the young stand, sporocarps produced by decomposer fungi concentrated higher levels of Ca and Mn than those produced by mycorrhizal fungi. In the mature stand, sporocarps of decomposer fungi concentrated higher levels of N, P, Mn, Ca and Fe than sporocarps of mycorrhizal fungi. Epigeous and hypogeous sporocarps concentrated higher levels of N, P, and K than sclerotia or mycelium. The highest concentration of N (4.36%), P (0.76%), K (3.22%) and Na (1,678 ppm) occurred in epigeous sporocarps. Highest Mn (740 ppm) and Ca (20,600 ppm) concentrations occurred in mycelium, while highest Mg (1,929 ppm) concentrations were in hypogeous sporocarps and highest Fe (4,153 ppm) concentrations were in sclerotia.     

Tree diversity and species identity effects on soil fungi,protists and animals are context dependent

Plant species richness and the presence of certain influential species (sampling effect) drive the stability and functionality of ecosystems as well as primary production and biomass of consumers. However, little is known about these floristic effects on richness and community composition of soil biota in forest habitats owing to methodological constraints. We developed a DNA metabarcoding approach to identify the major eukaryote groups directly from soil with roughly species-level resolution. Using this method, we examined the effects of tree diversity and individual tree species on soil microbial biomass and taxonomic richness of soil biota in two experimental study systems in Finland and Estonia and accounted for edaphic variables and spatial autocorrelation. Our analyses revealed that the effects of tree diversity and individual species on soil biota are largely context dependent. Multiple regression and structural equation modelling suggested that biomass, soil pH, nutrients and tree species directly affect richness of different taxonomic groups. The community composition of most soil organisms was strongly correlated due to similar response to environmental predictors rather than causal relationships. On a local scale, soil resources and tree species have stronger effect on diversity of soil biota than tree species richness per se.     

Species-specific effects of soil fauna on fungal foraging and decomposition

Decomposer fungi are primary decomposing agents in terrestrial soils. Their mycelial networks play an important role in nutrient mineralisation and distribution, but are also nutritious resources for various soil invertebrates. Global climate change is predicted to alter the diversity and community composition of these soil fauna. To understand whether changes in invertebrate species diversity are likely to affect fungal-mediated decomposition, this study compared the grazing potentials of different invertebrate taxa and functional groups. Specifically, the grazing impacts of seven invertebrate taxa on the growth and spatial distribution of six basidiomycete fungi growing from beech wood blocks in soil microcosms were explored. Wood decay rates by fungi were also compared. The consequences of grazing were both taxon- and species-specific. Generally, macro-invertebrates caused the greatest damage, while meso- and micro-invertebrates often stimulated mycelial growth. Invertebrate size, preferences and population dynamics are likely to influence grazing potentials. Effects of grazing varied between fungi, with mycelial morphology and biochemistry possibly influencing susceptibility. Heavy grazing indirectly increased fungal-mediated wood decomposition. Changes in invertebrate community composition are predicted to have consequences for fungal growth, activity and community structure in woodland soils. Abiotic climate change factors including CO₂ and temperature affect mycelial productivity directly, but the indirect effects, mediated through changes in the soil invertebrate community, may be equally important in controlling ecosystem functioning.     

Arbuscular mycorrhizal fungi associated with vegetation and soil parameters under rest grazing management in a desert steppe ecosystem

The impact of rest grazing on arbuscular mycorrhizal fungi (AMF) and the interactions of AMF with vegetation and soil parameters under rest grazing condition were investigated between spring and late summer in a desert steppe ecosystem with different grazing managements (rest grazing with different lengths of resting period, banned or continuous grazing) in Inner Mongolia, China. AMF diversity and colonization, vegetation biomass, soil properties and soil phosphatase activity were examined. In rest grazing areas of 60 days, AMF spore number and diversity index at a 0–10 cm soil depth as well as vesicular and hyphal colonization rates were higher compared with other grazing treatments. In addition, soil organic matter and total N contents were highest and soil alkaline phosphatase was most active under 60-day rest grazing. In August and September, these areas also had the highest amount of aboveground vegetation. The results indicated that resting grazing for an appropriate period of time in spring has a positive effect on AMF sporulation, colonization and diversity, and that under rest grazing conditions, AMF parameters are positively correlated with some soil characteristics.     

Impacts of fly-ash on soil and plant responses

Coal combustion produces carbon dioxides, SOx, NOx and a variety of byproducts, including fly-ash, flue gas and scrubber sludge. Fly-ash consists of minute glass-like particles and its deposition on leaves inhibits the normal transpiration and photosynthesis of plants. Fly-ash also affects the physicochemical characteristics of soil because it is generally very basic, rich in various essential and non-essential elements, but poor in both nitrogen and available phosphorus. The massive fly-ash materials have been a potential resource for the agricultural activities as well as the other industrial purposes. Practical value of fly-ash in agriculture as an 'effective and safe' fertiliser or soil amendment can be established after repeated field experiments. Here remains to be disclosed the biological processes and interactions due to 'lack and excess' of the fly-ash exposures along with abiotic and biotic factors. These may involve the symbiotic fixation of nitrogen and the biological extraction of metals following immobilisation of toxic heavy metal ions, as well as other neutralisation and equilibration processes during weathering. Nitrogen-fixing plants with an apparent heavy metal-tolerance can be helpful as the early colonisers of fly-ash dumps and nearby areas. Electronic Publication     

Plant parasite control and soil fauna diversity

The use of pesticides to control plant parasites and diseases has generated serious problems of public health and environmental quality, leading to the promotion of alternative Integrated Pest Management strategies that tend to rely more on natural processes and the active participation of farmers as observers and experimenters in their own fields. We present three case studies that point at different options provided by locally available populations of soil organisms, the maintenance of diverse populations of pests or increased resistance of plants to pest attacks by their interactions with earthworms and other useful soil organisms. These examples demonstrate the diversity of options offered by the non-planned agro-ecosystem diversity in pest control and the need to identify management options that maintain this biodiversity.     

Impacts of cattle grazing on seed production in Rainwater Basin Wetlands

Wetlands Ecology and Management - The Rainwater Basin region of Nebraska is a critical stopover area for spring migrating waterfowl. Management concerns focus on producing sufficient wetland seed...     

Universal and species-specific bacterial 'fungiphiles' in the mycospheres of different basidiomycetous fungi

In previous work, several bacterial groups that show a response to fruiting bodies (the mycosphere) of the ectomycorrhizal fungus Laccaria proxima were identified. We here extend this work to a broader range of fungal fruiting bodies sampled at two occasions. PCR-DGGE analyses showed clear effects of the mycosphere of diverse fungi on the total bacterial and Pseudomonas communities in comparison with those in the corresponding bulk soil. The diversities of the Pseudomonas communities increased dramatically in most of the mycospheres tested, which contrasted with a decrease of the diversity of the total bacterial communities in these habitats. The data also indicated the existence of universal (i.e. Pseudomonas poae , P. lini , P. umsongensis , P. corrugata , P. antarctica and Rahnella aquatilis ) as well as specific (i.e. P. viridiflava and candidatus Xiphinematobacter americani) fungiphiles, defined as bacteria adapted to the mycospheres of, respectively, three or more or just one fungal species. The selection of such fungiphiles was shown to be strongly related to their capacities to use particular carbonaceous compounds, as evidenced using principal components analyses of BIOLOG-based substrate utilization tests. The differentiating compounds, i.e. l -arabinose, l -leucine, m-inositol, m-arabitol, d -mannitol and d -trehalose, were tentatively linked to compounds known to occur in mycosphere exudates.     

Effect of soil fungistasis on zoopathogenic fungi

The inhibiting action of west-Siberian soils on spore germination and the growth and development of zoopathogenic fungi such as Emmonsia (Chrysosporium) crescens, Trichophyton mentagrophytes, Beauveria bassiana, Metarrhizium anisopliae, Paecilomyces farinosus, P. fumoso-roseus and Chrysosporium keratinophilum have been studied by the authors. The influence of carbon sources and the root exudates of plants on fungistasis have also been studied.     

Impacts of logging on density-dependent predation of dipterocarp seeds in a South East Asian rainforest

Much of the forest remaining in South East Asia has been selectively logged. The processes promoting species coexistence may be the key to the recovery and maintenance of diversity in these forests. One such process is the Janzen-Connell mechanism, where specialized natural enemies such as seed predators maintain diversity by inhibiting regeneration near conspecifics. In Neotropical forests, anthropogenic disturbance can disrupt the Janzen-Connell mechanism, but similar data are unavailable for South East Asia. We investigated the effects of conspecific density (two spatial scales) and distance from fruiting trees on seed and seedling survival of the canopy tree Parashorea malaanonan in unlogged and logged forests in Sabah, Malaysia. The production of mature seeds was higher in unlogged forest, perhaps because high adult densities facilitate pollination or satiate pre-dispersal predators. In both forest types, post-dispersal survival was reduced by small-scale (1 m(2)) conspecific density, but not by proximity to the nearest fruiting tree. Large-scale conspecific density (seeds per fruiting tree) reduced predation, probably by satiating predators. Higher seed production in unlogged forest, in combination with slightly higher survival, meant that recruitment was almost entirely limited to unlogged forest. Thus, while logging might not affect the Janzen-Connell mechanism at this site, it may influence the recruitment of particular species.     

Effect of treatment of soil with keratinaceous material on soil fungi

In the early periods of soil storage, the total number of fungi almost regularly and significantly increased with the concentration of keratinaceous material (ground buffalo hooves) between 1% and 10%. A concentration of 20% was stimulative after 7 days and became toxic after 15 days and remained so through the end of the experiment. With increase in the storage period, the beneficial effect of all concentrations was lost and in the case of high concentrations (5-20%) toxic ammonia was produced. The occurrence of Scopulariopsis brevicaulis, Cephalosporium acremonium, Chrysosporium tropicum, C. indicum, and C. keratinophilum increased markedly, especially at the higher concentrations of the keratinaceous material and after long periods of incubation. With increase in the concentration of keratinaceous material, the rate of evolution of ammonia from the soil sharply increased during the second week after treatment and fell off sharply during the third and fourth weeks. In soil stored at 35 C, the rate of decline in total fungi after longer periods of incubation was sharper at 35 C than at 25 C. Also the amount of evolved ammonia during the first and the second weeks was almost always higher at 35 C than at 25 C. Fourteen species were tested for keratinolytic activity. Three of them were highly keratinolytic and five moderately so.     

Northward range extension of an endemic soil decomposer with a distinct trophic position

Ecological niche theory asserts that invading species become established only if introduced propagules survive stochastic mortality and can exploit resources unconsumed by resident species. Because their transportation is not controlled by plant health or biosecurity regulations, soil macrofauna decomposers, including earthworms are probably introduced frequently into non-native soils. Yet even with climatic change, exotic earthworm species from southern Europe have not been reported to become established in previously glaciated areas of northern Europe that already have trophically differentiated earthworm communities of ‘peregrine’ species. We discovered established populations of the earthworm Prosellodrilus amplisetosus (Lumbricidae), a member of a genus endemic to southern France, in six habitats of an urban farm in Dublin, Ireland, about 1000 km north of the genus''s endemic range. Not only was P. amplisetosus the dominant endogeic (geophagous) earthworm species in two habitats, it also occupied a significantly different trophic position from the resident species, as evinced by stable isotope ratio analysis. The suggested ability of this non-native species to feed on and assimilate isotopically more enriched soil carbon (C) and nitrogen fractions that are inaccessible to resident species portends potential implications of decomposer range expansions for soil functioning including C sequestration.     

Litter and soil fauna of two Australian subtropical forests

The abundances of litter and soil fauna and some related environmental measures are given for two Australian subtropical forests, a notophyll vine forest (or rainforest) and a wet sclerophyll forest. Animals were more abundant in the wet sclerophyll forest; peak abundances were recorded in summer in both forests. Mites and Collembola accounted for 79% of the rainforest fauna and for 85% of the wet sclerophyll forest fauna. Most mites in the wet sclerophyll forest were Crypto stigmata (68%); in the rainforest both Cryptostigmata and Mesostigmata were well represented (84%). Patterns of aggregations of individuals within major faunal groups differed for the two forests. Correlations are made between the numbers of individuals of Collembola, of mites and of each order of mite and the environmental measures. Significant correlations emerged for some environmental measures in some seasons. Results are compared with those of other studies and it is concluded that poor or no humus development restricts the numbers of individuals living on tropical or subtropical forest floors. Speculations are presented to account for the difference between the faunas in the two Australian subtropical forests.     

Impacts of alien invasive plants on soil nutrients are correlated with initial site conditions in NW Europe

Alien invasive plants are capable of modifying ecosystem function. However, it is difficult to make generalisations because impacts often appear to be species- and site-specific. In this study, we examined the impacts of seven highly invasive plant species in NW Europe (Fallopia japonica, Heracleum mantegazzianum, Impatiens glandulifera, Prunus serotina, Rosa rugosa, Senecio inaequidens, Solidago gigantea) on nutrient pools in the topsoil and the standing biomass. We tested if the impacts follow predictable patterns, across species and sites or, alternatively, if they are entirely idiosyncratic. To that end, we compared invaded and adjacent uninvaded plots in a total of 36 sites with widely divergent soil chemistry and vegetation composition. For all species, invaded plots had increased aboveground biomass and nutrient stocks in standing biomass compared to uninvaded vegetation. This suggests that enhanced nutrient uptake may be a key trait of highly invasive plant species. The magnitude and direction of the impact on topsoil chemical properties were strongly site-specific. A striking finding is that the direction of change in soil properties followed a predictable pattern. Thus, strong positive impacts (higher topsoil nutrient concentrations in invaded plots compared to uninvaded ones) were most often found in sites with initially low nutrient concentrations in the topsoil, while negative impacts were generally found under the opposite conditions. This pattern was significant for potassium, magnesium, phosphorus, manganese and nitrogen. The particular site-specific pattern in the impacts that we observed provides the first evidence that alien invasive species may contribute to a homogenisation of soil conditions in invaded landscapes.     

Species-specific effects of live roots and shoot litter on soil decomposer abundances do not forecast plant litter-nitrogen uptake

Plant species produce litter of varying quality and differ in the quality and quantity of compounds they release from live roots, which both can induce different decomposer growth in the soil. To test whether differences in decomposer growth can forecast the amount of N species acquire from plant litter, as suggested by theory, we grew individuals of three grassland plants—Holcus lanatus, Plantago lanceolata and Lotus corniculatus—in soils into which ¹⁵N-labelled litter of either Holcus, Plantago or Lotus was added. We measured the effects of live roots and litter of each species on soil microbes and their protozoan and nematode feeders, and to link decomposer growth and plant nutrient uptake, we measured the amount of N taken up by plants from the added litter. We hypothesised that those species that induce the highest growth of microbes, and especially that of microbial feeders, will also take up the highest amount of N from the litter. We found, however, that although numbers of bacterial-feeding Protozoa and nematodes were on average lower after addition of Holcus than Plantago or Lotus litter, N uptake was higher from Holcus litter. Further, although the effects on Protozoa and bacterial- and fungal-feeding nematodes did not differ between the live plants, litter-N uptake differed, with Holcus being the most efficient compared to Plantago and Lotus. Hence, although microbes and their feeders unquestionably control N mineralization in the soil, and their growth differs among plant species, these differences cannot predict differences in litter-N uptake among plant species. A likely reason is that for nutrient uptake, other species-specific plant traits, such as litter chemistry, root proliferation ability and competitiveness for soil N, override in significance the species-specific ability of plants to induce decomposer growth.