基于光学相干检测的非接触全光学光声显微镜

报道了一种非接触、宽频带、联合微型激光器和低相干迈克尔逊干涉仪的全光学光声显微镜(BD-AOPAM)、光学相干层析系统(OCT)的硬件用于光声信号的检测。目前全光学光声显微镜可检测到的带宽为67 MHz,用碳纤维测得系统的横向分辨率可以达到10.8μm。进一步的,利用包埋头发丝的模拟样品和在体小鼠耳朵血管来验证系统的成像能力。实验结果表明,这种全光学光声显微镜可以在体的实现组织高分辨率的成像,有望成为一种便携式非接触的光声显微镜应用于生物医学当中。     

Double-Exposure Optical Sectioning Structured Illumination Microscopy Based on Hilbert Transform Reconstruction

Structured illumination microscopy (SIM) with axially optical sectioning capability has found widespread applications in three-dimensional live cell imaging in recent years, since it combines high sensitivity, short image acquisition time, and high spatial resolution. To obtain one sectioned slice, three raw images with a fixed phase-shift, normally 2π/3, are generally required. In this paper, we report a data processing algorithm based on the one-dimensional Hilbert transform, which needs only two raw images with arbitrary phase-shift for each single slice. The proposed algorithm is different from the previous two-dimensional Hilbert spiral transform algorithm in theory. The presented algorithm has the advantages of simpler data processing procedure, faster computation speed and better reconstructed image quality. The validity of the scheme is verified by imaging biological samples in our developed DMD-based LED-illumination SIM system.     

Scanning Electron Microscopy of Microbial Cells on Membrane Filters

Scanning electron micrographs of a Pseudomonas species, Staphylococcus aureus, and Bacillus subtilis on two membrane filtration systems are compared.     

High-Throughput Nonlinear Optical Microscopy

High-resolution microscopy methods based on different nonlinear optical (NLO) contrast mechanisms are finding numerous applications in biology and medicine. While the basic implementations of these microscopy methods are relatively mature, an important direction of continuing technological innovation lies in improving the throughput of these systems. Throughput improvement is expected to be important for studying fast kinetic processes, for enabling clinical diagnosis and treatment, and for extending the field of image informatics. This review will provide an overview of the fundamental limitations on NLO microscopy throughput. We will further cover several important classes of high-throughput NLO microscope designs with discussions on their strengths and weaknesses and their key biomedical applications. Finally, this review will close with a perspective of potential future technological improvements in this field.     

Correlative Stochastic Optical Reconstruction Microscopy and Electron Microscopy

Correlative fluorescence light microscopy and electron microscopy allows the imaging of spatial distributions of specific biomolecules in the context of cellular ultrastructure. Recent development of super-resolution fluorescence microscopy allows the location of molecules to be determined with nanometer-scale spatial resolution. However, correlative super-resolution fluorescence microscopy and electron microscopy (EM) still remains challenging because the optimal specimen preparation and imaging conditions for super-resolution fluorescence microscopy and EM are often not compatible. Here, we have developed several experiment protocols for correlative stochastic optical reconstruction microscopy (STORM) and EM methods, both for un-embedded samples by applying EM-specific sample preparations after STORM imaging and for embedded and sectioned samples by optimizing the fluorescence under EM fixation, staining and embedding conditions. We demonstrated these methods using a variety of cellular targets.     

Design of Optical Filters with Flat-on-Top Transmission Lineshapes Based on Two Side-Coupled Metallic Grooves

We investigate theoretically and numerically the resonant transmission through side-coupled metallic grooves. In the framework of coupled mode theory (CMT), a single metallic groove can be considered as a lossy optical resonator and two metallic grooves coupled via tunneling effect can be treated as a second-order cascade resonator. The relationship between the transmission lineshape of the coupled grooves and the cross-coupling between the grooves is analyzed by CMT. It is found that a flat-on-top lineshape can be obtained when the cross-coupling is equal to the total decay rate of the groove mode. Predictions based on the CMT analysis are in good agreement with the simulation results based on the finite-difference time-domain technique.     

Non-Linear Optical Microscopy Sheds Light on Cardiovascular Disease

Many cardiac diseases have been associated with increased fibrosis and changes in the organization of fibrillar collagen. The degree of fibrosis is routinely analyzed with invasive histological and immunohistochemical methods, giving a limited and qualitative understanding of the tissue''s morphological adaptation to disease. Our aim is to quantitatively evaluate the increase in fibrosis by three-dimensional imaging of the collagen network in the myocardium using the non-linear optical microscopy techniques Two-Photon Excitation microscopy (TPE) and Second Harmonic signal Generation (SHG). No sample staining is needed because numerous endogenous fluorophores are excited by a two-photon mechanism and highly non-centrosymmetric structures such as collagen generate strong second harmonic signals. We propose for the first time a 3D quantitative analysis to carefully evaluate the increased fibrosis in tissue from a rat model of heart failure post myocardial infarction. We show how to measure changes in fibrosis from the backward SHG (B_SHG) alone, as only backward-propagating SHG is accessible for true in vivo applications. A 5-fold increase in collagen I fibrosis is detected in the remote surviving myocardium measured 20 weeks after infarction. The spatial distribution is also shown to change markedly, providing insight into the morphology of disease progression.     

Improved-Throughput Traction Microscopy Based on Fluorescence Micropattern for Manual Microscopy

Traction force microscopy (TFM) is a quantitative technique for measuring cellular traction force, which is important in understanding cellular mechanotransduction processes. Traditional TFM has a significant limitation in that it has a low measurement throughput, commonly one per TFM dish, due to a lack of cell position information. To obtain enough cellular traction force data, an onerous workload is required including numerous TFM dish preparations and heavy cell-seeding activities, creating further difficulty in achieving identical experimental conditions among batches. In this paper, we present an improved-throughput TFM method using the well-developed microcontact printing technique and chemical modifications of linking microbeads to the gel surface to address these limitations. Chemically linking the microbeads to the gel surface has no significant influence on cell proliferation, morphology, cytoskeleton, and adhesion. Multiple pairs of force loaded and null force fluorescence images can be easily acquired by means of manual microscope with the aid of a fluorescence micropattern made by microcontact printing. Furthermore, keeping the micropattern separate from cells by using gels effectively eliminates the potential negative effect of the micropattern on the cells. This novel design greatly improves the analysis throughput of traditional TFM from one to at least twenty cells per petri dish without losing unique advantages, including a high spatial resolution of traction measurements. This newly developed method will boost the investigation of cell-matrix mechanical interactions.     

基于Gabor滤波器的皮肤纹理图像增强

在疗效化妆品中,常常需要对护肤品的性能和效果进行分析。皮肤纹理的检测是客观衡量疗效化妆品的有效手段。基于计算机视觉技术的皮肤纹理分析,对拍摄的皮肤图像要进行图像预处理,增强图像,为后续的分析提供有效的数据。采用经过微调的定向的Gabor滤波器进行增强图像,通过实验得出Gabor滤波器不仅抑制噪声的效果好,还保留了皮肤图像的整体和局部特征。     

A Minimal Optical Trapping and Imaging Microscopy System

We report the construction and testing of a simple and versatile optical trapping apparatus, suitable for visualizing individual microtubules (∼25 nm in diameter) and performing single-molecule studies, using a minimal set of components. This design is based on a conventional, inverted microscope, operating under plain bright field illumination. A single laser beam enables standard optical trapping and the measurement of molecular displacements and forces, whereas digital image processing affords real-time sample visualization with reduced noise and enhanced contrast. We have tested our trapping and imaging instrument by measuring the persistence length of individual double-stranded DNA molecules, and by following the stepping of single kinesin motor proteins along clearly imaged microtubules. The approach presented here provides a straightforward alternative for studies of biomaterials and individual biomolecules.     

Elastic Moduli of Collagen Gels Can Be Predicted from Two-Dimensional Confocal Microscopy

We quantitatively compare data obtained from imaging two-dimensional slices of three-dimensional unlabeled and fluorescently labeled collagen gels with confocal reflectance microscopy (CRM) and/or confocal fluorescence microscopy (CFM). Different network structures are obtained by assembling the gels over a range of concentrations at various temperatures. Comparison between CRM and CFM shows that the techniques are not equally sensitive to details of network structure, with CFM displaying higher fidelity in imaging fibers parallel to the optical axis. Comparison of CRM of plain and labeled collagen gels shows that labeling itself induces changes in gel structure, chiefly through inhibition of fibril bundling. Despite these differences, image analyses carried out on two-dimensional CFM and CRM slices of collagen gels reveal identical trends in structural parameters as a function of collagen concentration and gelation temperature. Fibril diameter approximated from either CRM or CFM is in good accord with that determined via electron microscopy. Two-dimensional CRM images are used to show that semiflexible polymer theory can relate network structural properties to elastic modulus successfully. For networks containing bundled fibrils, it is shown that average structural diameter, rather than fibril diameter, is the length scale that sets the magnitude of the gel elastic modulus.     

液晶空间光调制器在生物光学显微中的应用

利用液晶空间光调制器(LCSLM)对光学显微中的成像光进行实时的相位/振幅调制,不仅可以实现各种传统的生物样品相位显微,而且能够以更复杂的相位调制方式,如螺旋相位滤波,得到新的显微图像。该方式已经和荧光显微、光镊技术结合,丰富了生物显微技术。     

Evaluation of Restoration Practice Based on Environmental Filters

Environmental filter models have been proposed as conceptual organizing frameworks for comparing and contrasting restoration practices. I evaluate two such environmental filter models, one proposed by Fattorini and Halle (2004) and the other by Hobbs and Norton (2004) . These models were developed by abstracting restoration practice into what the authors viewed as the essential features restoration practitioners target for control or manipulation. In so doing, these conceptual frameworks hope to be able to transfer insights between different kinds of ecosystems. Here, I take the opposite approach: given an environmental filter model, I asked how well its filters could characterize restoration practices reported in the literature. I found that it was easier to characterize specific restoration practice using the more detailed filters described by Hobbs and Norton. I found that manipulation of biotic filters was most common in terrestrial ecosystems, whereas manipulation of abiotic filters was more common in wetland and stream ecosystems. Fattorini and Halle’s model appears most useful for evaluating the current status of degraded ecosystems compared to nondegraded ones, but Hobbs and Norton’s model is better for evaluating what particular restoration activities might be undertaken to move that system from a degraded to a nondegraded state.     

Angle-Insensitive Color Filters Based on Multilayer Ultrathin-Film Structures

Plasmonics - Color filters utilize optical resonance in thin-film nanostructures to obtain vivid reflective or transmissive colors, which has attracted a lot of attention recently. Here, we report...     

Fast Calcium Imaging with Optical Sectioning via HiLo Microscopy

Imaging intracellular calcium concentration via reporters that change their fluorescence properties upon binding of calcium, referred to as calcium imaging, has revolutionized our way to probe neuronal activity non-invasively. To reach neurons densely located deep in the tissue, optical sectioning at high rate of acquisition is necessary but difficult to achieve in a cost effective manner. Here we implement an accessible solution relying on HiLo microscopy to provide robust optical sectioning with a high frame rate in vivo. We show that large calcium signals can be recorded from dense neuronal populations at high acquisition rates. We quantify the optical sectioning capabilities and demonstrate the benefits of HiLo microscopy compared to wide-field microscopy for calcium imaging and 3D reconstruction. We apply HiLo microscopy to functional calcium imaging at 100 frames per second deep in biological tissues. This approach enables us to discriminate neuronal activity of motor neurons from different depths in the spinal cord of zebrafish embryos. We observe distinct time courses of calcium signals in somata and axons. We show that our method enables to remove large fluctuations of the background fluorescence. All together our setup can be implemented to provide efficient optical sectioning in vivo at low cost on a wide range of existing microscopes.     

Quantitative Optical Microscopy: Measurement of Cellular Biophysical Features with a Standard Optical Microscope

We describe the use of a standard optical microscope to perform quantitative measurements of mass, volume, and density on cellular specimens through a combination of bright field and differential interference contrast imagery. Two primary approaches are presented: noninterferometric quantitative phase microscopy (NIQPM), to perform measurements of total cell mass and subcellular density distribution, and Hilbert transform differential interference contrast microscopy (HTDIC) to determine volume. NIQPM is based on a simplified model of wave propagation, termed the paraxial approximation, with three underlying assumptions: low numerical aperture (NA) illumination, weak scattering, and weak absorption of light by the specimen. Fortunately, unstained cellular specimens satisfy these assumptions and low NA illumination is easily achieved on commercial microscopes. HTDIC is used to obtain volumetric information from through-focus DIC imagery under high NA illumination conditions. High NA illumination enables enhanced sectioning of the specimen along the optical axis. Hilbert transform processing on the DIC image stacks greatly enhances edge detection algorithms for localization of the specimen borders in three dimensions by separating the gray values of the specimen intensity from those of the background. The primary advantages of NIQPM and HTDIC lay in their technological accessibility using “off-the-shelf” microscopes. There are two basic limitations of these methods: slow z-stack acquisition time on commercial scopes currently abrogates the investigation of phenomena faster than 1 frame/minute, and secondly, diffraction effects restrict the utility of NIQPM and HTDIC to objects from 0.2 up to 10 (NIQPM) and 20 (HTDIC) μm in diameter, respectively. Hence, the specimen and its associated time dynamics of interest must meet certain size and temporal constraints to enable the use of these methods. Excitingly, most fixed cellular specimens are readily investigated with these methods.