Occurrence and distribution of zoosporic organisms in water bodies from Brazilian Cerrado

Zoosporic organisms are commonly found in different aquatic ecosystems; however little is known about the influence of environmental factors and seasonal fluctuations on their occurrence and distribution. This study investigated patterns of abundance, frequency and diversity of these organisms and their relationship with some abiotic factors and seasonality in a cerrado remnant in Sao Paulo, Brazil. Water samples were collected at four dates in two areas of this remnant during the rainy and dry seasons, and 13 abiotic factors were analyzed. From 48 samples collected, 32 taxa were isolated with the multiple baiting technique. The community structure of the zoosporic organisms showed some changes in response to different spatial distribution and seasonal fluctuations, probably influenced by distinct abiotic characteristics of each area or climatic period. Still, the similarity between areas and seasons indicated by S?rensen index and diversity (richness, evenness, Shannon and Simpson indices) were high.     

Diversity,role in decomposition,and succession of zoosporic fungi and straminipiles on submerged decaying leaves in a woodland stream

Leaf litter is a very important primary source of energy in woodland streams. Decomposition of leaf litter is a process mediated by many groups of microorganisms which release extracellular enzymes for the degradation of complex macromolecules. In this process, true fungi and straminipiles are considered to be among the most active groups, more active than the bacteria, at least during the early stages of the process. Colonization increases the quality of the leaves as a food resource for detritivores. In this way, matter and energy enter detritus-based food chains. Previously, aquatic hyphomycetes were considered to be the major fungal group responsible for leaf litter decomposition. Although zoosporic fungi and straminipiles are known to colonize and decompose plant tissues in various environments, there is scant information on their roles in leaf decomposition. This study focuses on the communities of zoosporic fungi and straminipiles in a stream which are involved in the decomposition of leaves of two plant species, Ligustrum lucidum and Pouteria salicifolia, in the presence of other groups of fungi. A characteristic community dominated by Nowakowskiella elegans, Phytophthora sp., and Pythium sp. was found. Changes in the fungal community structure over time (succession) was observed: terrestrial mitosporic fungi appeared during the early stages, zoosporic fungi, straminipiles, and aquatic Hyphomycetes in early-to-intermediate stages, while representatives of the phylum Zygomycota were found at early and latest stages of the decomposition. These observations highlight the importance of zoosporic fungi and straminipiles in aquatic ecosystems.     

Spatio-temporal,environmental factors,and host identity shape culturable-epibiotic fungi of seaweeds in the Red Sea,Egypt

The study of fungal species diversity from marine algae is in its infancy; as now no studies have been carried out on the distribution and diversity of fungi on the surfaces of marine macroalgae where all fungal–algal interactions tend to begin. The aim of this study was to isolate and describe the culturable part of mycobiota associated with the surface of benthic marine macroalgae (epiphytic or epibiotic fungi). This is an important step in understanding their abundance, diversity and factors influencing their variability and composition. The fungal community was dominated by Ascomycetes (89%) with Eurotiales as the most abundant fungal order followed by Capnodiales, Pleosporales, and Hypocreales, while Zygomycetes was less frequent. The nature of occurrence of fungal genera on different macroalgal hosts suggests that a mix of generalists’ framework applies to fungal epiphytes of seaweeds, but the abundance of fungal taxa varied among ecological functional groups of algae, as well as macroalgal taxonomic groups, which imply host filtering. The fungal assemblages were also characterized by temporal variation with variation in temperature, pH, and salinity as the most important abiotic factors. The structure of fungal assemblages showed high beta diversity and low similarity between hosts.     

Zoosporic fungi in freshwater ecosystems

A review of the modern state of knowledge of zoosporic fungi in freshwater plankton and benthos is given. The effects of abiotic factors upon the distribution and development of these fungi are discussed, along with the problem of the role zoosporic fungi play in lake ecosystems.     

What has happened to the “aquatic phycomycetes” (sensu Sparrow)? Part II: Shared properties of zoosporic true fungi and fungus-like microorganisms

Many species of zoosporic heterotrophic parasites, saprotrophs and mutualists in the Phyla Perkinsozoa (dinoflagellates), Oomycota, Hyphochytriomycota, Labyrinthulomycota and Phyomyxea share morphological characteristics with zoosporic true fungi especially with some of the Chytridiomycota and with fungus-like organisms in the Phyla Mesomycetozoea, Chytridiomycota and Aphelidae. These characteristics include chemotactic motile zoospores, zoosporangia which produce zoospores, thick walled resistant cysts, rhizoid-like structures, hyphal-like structures and cell walls surrounding the cells in several phases of their life cycle. These assemblages also inhabit both marine and freshwater ecosystems in which aquatic fungi and fungus-like organisms are found, have similar life cycles, grow on similar substrates, use similar infection strategies and infect some of the same host plants and animals. Many of these species were once included in the aquatic phycomycetes, an ecological assemblage of microorganisms but not a valid taxonomic group. Some of the shared characteristics are discussed in this review.     

Factors influencing macroinvertebrate assemblages in artificial subtropical ponds of Taiwan

Macroinvertebrate assemblages and its association with environmental factors at the 11 artificial subtropical ponds of Taiwan were examined using the multivariate analysis software STATICO. The aims of the study were to determine whether spatial and seasonal variation of macroinvertebrate assemblages changed seasonally, to examine which environmental factors determined the spatial and temporal structure of maroinvertebrate assemblages, and to compare between-pond variations in the taxon composition of macroinvertebrates. Macroinvertebrates were collected seasonally by a corer and a sweep net in 2007, and 13 physical and chemical factors were measured at the same time. A total of 31 macroinvertebrate taxa were collected during the sampling period, and the most dominant taxa were Chironomidae (31.7% of total animal abundance) and Tubificidae (22.4%). STATICO identified pond size, pond depth, sediment depth, and altitude as the major abiotic factors and Bufo melanostictus (Amphibia) as the major biotic factor to influence macroinvertebrate assemblages at these ponds. These factors changed with seasonality. For example, the abundance of B. melanostictus was the most important factor during the spring but became much less important in other seasons. According to the spatial distribution patterns of macroinvertebrate assemblages, macroinvertebrates could be split into two groups based on their dispersal. The active dispersers, such as insect taxa, were strongly associated with pond size and the passive dispersers, such as non-insect taxa, were strongly associated with the pond depth and/or sediment depth. The results of this study suggested that pond size might influence macroinvertebrate assemblages through their dispersal mechanisms and that the environmental factors which influenced the macroinvertebrate assemblages most changed with seasons in this study area.     

Phytoplankton diversity (alpha,beta, and gamma) from the Araguaia River tropical floodplain lakes (central Brazil)

Alpha, beta and gamma are three components of species diversity. Knowing these attributes in floodplain lake phytoplankton communities is vital when selecting conservation areas. Species diversity is commonly used with other taxonomic groups, but rarely with phytoplankton. We compared the number of phytoplankton species (alpha diversity) from 21 Middle Araguaia River floodplain lakes in the 2000 and 2001 rainy and dry seasons. From these samples we estimated complete survey species richness (gamma diversity), quantified differences in species composition between lakes (beta diversity) and assessed the influence of abiotic variables on beta diversity. We recorded a total of 577 taxa. The Sjack1 estimator indicated that 62.31% of taxa were sampled in the 2000 rainy and 67.65% dry seasons, and 68.36% in the 2001 rainy and 73.5% dry seasons. In almost all seasons, alpha diversity negatively correlated with latitude. Beta diversity (β-1) was higher in high water periods, especially in 2000. This may have been caused by isolated heavy rainfall, which would have increased environmental heterogeneity and raised beta diversity. DCA showed differences in phytoplankton composition between rainy and dry seasons in 2000 and 2001, reflecting the influence of flood pulses on phytoplankton composition. The Mantel test indicated spatial distribution patterns where geographically more distant lakes had less-similar phytoplankton communities. Handling editor: J. Padisak     

Macrofauna biodiversity of mussel bed assemblages in Thermaikos Gulf (northern Aegean Sea)

Biomonitoring of mussel bed assemblages can provide valuable information about the impact of pollution on hard substrate assemblages. This study of Mytilus galloprovincialis mussel beds in Thermaikos Gulf (northern Aegean Sea) deals with the spatial and temporal structure of the associated fauna. Samples were collected and abiotic factors were measured in two successive years. Common biocoenotic methods were employed to analyze the data. The samples could be separated into three groups, with summer and winter samples being clearly different. A total of 100 species were found: polychaetes and crustaceans were the most dominant taxa. The assemblage shows high diversity with respect to species abundance. Biotic interactions within the assemblage appear to influence its composition, although the total evenness remains unaffected in space and time. The M. galloprovincialis assemblages can be found in clean as well as in polluted waters and, therefore, are of great interest in biomonitoring studies.Communicated by H.-D. Franke     

Ontogenetic allometry of the bluemouth, <Emphasis Type="Italic">Helicolenus dactylopterus dactylopterus</Emphasis> (Teleostei: Scorpaenidae), in the Northeast Atlantic and Mediterranean based on geometric morphometrics

Since the emergence of the ‘microbial loop’ concept, heterotrophic flagellates have received particular attention as grazers in aquatic ecosystems. These microbes have historically been regarded incorrectly as a homogeneous group of bacterivorous protists in aquatic systems. More recently, environmental rDNA surveys of small heterotrophic flagellates in the pelagic zone of freshwater ecosystems have provided new insights. (i) The dominant phyla found by molecular studies differed significantly from those known from morphological studies with the light microscope, (ii) the retrieved phylotypes generally belong to well-established eukaryotic clades, but there is a very large diversity within these clades and (iii) a substantial part of the retrieved sequences cannot be assigned to bacterivorous but can be assigned instead to parasitic and saprophytic organisms, such as zoosporic true fungi (chytrids), fungus-like organisms (stramenopiles), or virulent alveolate parasites (Perkinsozoa and Amoebophrya sp.). All these microorganisms are able to produce small zoospores to assure dispersal in water during their life-cycles. Based on the existing literature on true fungi and fungus-like organisms, and on the more recently published eukaryotic rDNA environmental studies and morphological observations, we conclude that previously overlooked microbial diversity and related ecological potentials require intensive investigation (i) for an improved understanding of the roles of heterotrophic flagellates in pelagic ecosystems and (ii) to properly integrate the concept of ‘the microbial loop’ into modern pelagic microbial ecology.     

Are diatom diversity indices reliable monitoring metrics?

A biological survey was carried out in 640 stations spread over the Loire-Bretagne National Network (France) between 1996 and 2000. Epilithic diatom inventories were obtained following standard methods. A total of 934 diatom taxa were identified. Common diversity indices (species richness, Shannon’s diversity, equitability, dominance, etc.) were calculated and compared against abiotic factors verify their reliability as biomonitoring metrics. Sampling stations were classified according to their trophic status (TP concentration). Several theoretical predictions about the relationship between community structural parameters and limnological variables were tested. In general, diversity indices exhibited poor linear correlations with environmental factors indicating ecological status. No clear patterns were found concerning species accumulation curves, occurrence-abundance, frequency-abundance and frequency distribution of diatom taxa between different trophic levels, although assemblages from stations with lower TP levels were characterized by relatively high dominances of certain taxa, mainly Achnanthidium minutissimum. In the light of these findings, the use of diatom diversity indices in biological quality surveillance protocols in continental waters is discouraged. Results are compared and discussed with similar studies.     

皖大别山区虫生真菌群落多样性研究

选用物种丰富度(S)、Shannon-Wiener多样性指数(H')、Pielou均匀度(E)和优势度曲线(K—dominance)等指标,对安徽大别山区虫生真菌群落多样性进行了测定．结果表明,群落的多样性指标能较客观地反映群落的结构状态,揭示各群落间的关系．利用极点排序和系统聚类,可将安徽大别山区虫生真菌区系划分为3个垂直生态类群：温湿低山气候类型(海拔900m以下)、凉湿中山气候类型(海拔900～1200m)和寒湿山顶气候类型(海拔1200m以上)．     

Large-subunit rRNA sequence of the chytridiomyceteBlastocladiella emersonii,and implications for the evolution of zoosporic fungi

The 5.8S and 28S ribosomal RNA sequences of the chytridiomyceteBlastocladiella emersonii were determined. These data were combined with 18S rRNA sequences in order to carry out a phylogenetic analysis based on distance matrix, parsimony, and maximum likelihood methods. The new data confirmed that chytridiomycetes are true fungi and not protists, as was already suggested on the basis of biochemical, ultrastructural, and 18S rRNA data. Within the fungal clade,B. emersonii formed the first line of divergence. The position of the fungi within the eukaryotic “crown” taxa was also reassessed, and the alveolate-stramenopile cluster appeared as their sister group. The stramenopiles also comprise a number of zoosporic fungi, which resemble chytridiomycetes in so many respects, e.g., production of motile spores, thallus morphology, and absorptive nutrition, that they have been classified together with them in the past. This suggests that the possible common ancestor of the fungi, stramenopiles, and alveolates may have been a zoosporic fungus, which would mean that zoosporic fungi are paraphyletic instead of polyphyletic as previously suggested. Correspondence to: R. De Wachter     

Biodiversity amongst filamentous fungi

Diversities in fungi are manifold. Fungi themselves are heterogeneous and constitute at least three unrelated major taxa. Structural diversity reflects, in most cases, adaptive and functional strategies. Diversity in nucleic acids and chemical compounds is very high in several fungal taxa. Fungi play an essential role in the function of ecosystems. The diversity of plant parasites is extremely high and species-dependent associations exist. Saprobic fungi are most important in wood and litter decay and diverse taxa comprise the main decomposers in specific successional niches. Two dominating symbiotic systems have evolved convergently in various fungal groups, notably lichens and mycorrhizas, both remarkably diverse in their heterotrophic partners.     

Diversity and habitat relationships of hypogeous fungi. II. Factors influencing the occurrence and number of taxa

Fruit-bodies of hypogeous fungi were sampled over two seasons across 136 forested study sites representing a stratified sample of the climatic, geological and topographic features of far south-eastern mainland Australia. Two hundred and nine species, over three-quarters being undescribed, were recorded. Statistical models based on various environmental attributes measured for each site were developed for the occurrence of several common taxa. At a landscape scale, climatic factors such as mean minimum temperature of the coldest month and annual mean moisture index were important explanatory variables for most taxa examined, but the type of response varied. More locally, topographic position, soil fertility, time since last fire and micro-habitat structures such as the leaf litter layer and number of large fallen trees also influenced the distribution of taxa in different ways. A model was then developed for the number of fungal species occurring at each site. Important explanatory variables were type of substrate, topography and diversity of potential host eucalypt species. The utility of each model constructed needs evaluation by further sampling of hypogeous fungi. Possible implications of our findings for forest management are discussed. Further analyses of our existing data are also identified.     

Invertebrate drift along a longitudinal gradient in a Neotropical stream in Serra do Cipó National Park,Brazil

The diversity and composition of drift invertebrate assemblages were evaluated along a longitudinal gradient of an altitudinal stream in southeastern Brazil. The main goal of this study was to evaluate the influence of seasonality, stream order, and some abiotic factors on invertebrate drift and the use of drifting invertebrate assemblages to assess aquatic invertebrate diversity. Drift samples were collected over a 24 h period using nets (open area of 0.08 m²; mesh 0.250 mm), partially submerged (60%) in the water column. Taxonomic richness, Pielou evenness (J), Shannon–Wiener diversity (H), and total density of drift invertebrate assemblages were used in unpaired t-tests, Kruskal–Wallis and stepwise multiple regression analysis. The results showed a high taxonomic richness of aquatic invertebrates, with 91 taxa found. Chironomidae and Ephemeroptera represented together c. 80% of the total density of drift organisms. The drift approach allowed the collection of new and rare taxa, besides the knowledge of pupae stage of several chironomid genera. Significant differences in the taxonomic richness and diversity of drift invertebrate assemblages were found between the rainy and dry periods, indicating a significant influence of seasonality. An increase in water flow and electrical conductivity were associated with the increase in the taxonomic richness and diversity in the rainy period. No significant differences were found among the other abiotic variables among the stream orders.     

Shrub range expansion alters diversity and distribution of soil fungal communities across an alpine elevation gradient

Global climate and land use change are altering plant and soil microbial communities worldwide, particularly in arctic and alpine biomes where warming is accelerated. The widespread expansion of woody shrubs into historically herbaceous alpine plant zones is likely to interact with climate to affect soil microbial community structure and function; however, our understanding of alpine soil ecology remains limited. This study aimed to (i) determine whether the diversity and community composition of soil fungi vary across elevation gradients and to (ii) assess the impact of woody shrub expansion on these patterns. In the White Mountains of California, sagebrush (Artemisia rothrockii) shrubs have been expanding upwards into alpine areas since 1960. In this study, we combined observational field data with a manipulative shrub removal experiment along an elevation transect of alpine shrub expansion. We utilized next‐generation sequencing of the ITS1 region for fungi and joint distribution modelling to tease apart effects of the environment and intracommunity interactions on soil fungi. We found that soil fungal diversity declines and community composition changes with increasing elevation. Both abiotic factors (primarily soil moisture and soil organic C) and woody sagebrush range expansion had significant effects on these patterns. However, fungal diversity and relative abundance had high spatial variation, overwhelming the predictive power of vegetation type, elevation and abiotic soil conditions at the landscape scale. Finally, we observed positive and negative associations among fungal taxa which may be important in structuring community responses to global change.     

Ectomycorrhizal fungi in Mexican Alnus forests support the host co-migration hypothesis and continental-scale patterns in phylogeography

To examine the geographic patterns in Alnus-associated ectomycorrhizal (ECM) fungal assemblages and determine how they may relate to host plant biogeography, we studied ECM assemblages associated with two Alnus species (Alnus acuminata and Alnus jorullensis) in montane Mexico and compared them with Alnus-associated ECM assemblages located elsewhere in the Americas. ECM root samples were collected from four sites in Mexico (two per host species), identified with ITS and LSU rRNA gene sequences, and assessed using both taxon- (richness, diversity, evenness indices) and sequence divergence-based (UniFrac clustering and significance) analyses. Only 23 ECM taxa were encountered. Clavulina, an ECM lineage never before reported with Alnus, contained the dominant taxon overall. ECM assemblage structure varied between hosts, but UniFrac significance tests indicated that both associated with similar ECM lineage diversity. There was a strikingly high sequence similarity among a diverse array of the ECM taxa in Mexico and those in Alnus forests in Argentina, the United States, and Europe. The Mexican and United States assemblages had greater overlap than those present in Argentina, supporting the host–ECM fungi co-migration hypothesis from a common north temperate origin. Our results indicate that Alnus-associated ECM assemblages have clear patterns in richness and composition across a wide range of geographic locations. Additional data from boreal western North America as well as the eastern United States and Canada will be particularly informative in further understanding the co-biogeographic patterns of Alnus and ECM fungi in the Americas.     

Diversity and community composition of butterflies and odonates in an ENSO-induced fire affected habitat mosaic: a case study from East Kalimantan, Indonesia

Little is known about the diversity of tropical animal communities in recently fire‐affected environments. Here we assessed species richness, evenness, and community similarity of butterflies and odonates in landscapes located in unburned isolates and burned areas in a habitat mosaic that was severely affected by the 1997/98 ENSO (El Niño Southern Oscillation) event in east Kalimantan, Indonesian Borneo. In addition related community similarity to variation in geographic distance between sampling sites and the habitat/vegetation structure Species richness and evenness differed significantly among landscapes but there was no congruence between both taxa. The species richness of butterflies was, for example, highest in sites located in a very large unburned isolate whereas odonate species richness was highest in sites located in a small unburned isolate and once‐burned forest. We also found substantial variation in the habitat/vegetation structure among landscapes but this was mainly due to variation between unburned and burned landscapes and variation among burned landscapes. Both distance and environment (habitat/vegetation) contributed substantially to explaining variation in the community similarity (beta diversity) of both taxa. The contribution of the environment was, however, mainly due to variation between unburned and burned landscapes, which contained very different assemblages of both taxa. Sites located in the burned forest contained assemblages that were intermediate between assemblages from sites in unburned forest and sites from a highly degraded slash‐and‐burn area indicating that the burned forest was probably recolonised by species from these disparate environments. We, furthermore, note that in contrast to species richness (alpha diversity) the patterns of community similarity (beta diversity) were highly congruent between both taxa. These results indicate that community‐wide multivariate measures of beta diversity are more consistent among taxa and more reliable indicators of disturbance, such as ENSO‐induced burning, than univariate measures.     

Fluorescence in situ hybridization of uncultured zoosporic fungi: Testing with clone-FISH and application to freshwater samples using CARD-FISH

Recently, molecular environmental surveys of the eukaryotic microbial community in lakes have revealed a high diversity of sequences belonging to uncultured zoosporic fungi commonly known as chytrids. These microorganisms have two different stages in their life cycle and are known as algal parasites (i.e. host-attached infective sporangia) and as food sources for zooplankton (i.e. free-living zooflagellate propagules) in aquatic systems. However, because of their small size and their lack of distinctive morphological features, traditional microscopy does not allow the detection of chytrids, particularly of zoospores which have probably been misidentified as phagotrophic flagellates in previous studies. Hence, quantitative data on chytrids in natural environments is missing. We have adapted a clone-FISH approach known from prokaryotes to optimize the hybridization conditions of a designed oligonucleotidic probe specific to Chytridiales (i.e. the largest group of the true-fungal division of Chytridiomycota), before application to natural samples using the CARD-FISH approach. When these conditions were applied, the CARD-FISH assay demonstrated high specificity and sensitivity, and offers a promising tool for quantitative assessment of natural zoosporic fungi, primarily of zoospores which contributed up to 60% of the total abundance of heterotrophic flagellates. Although the field results from the CARD-FISH approach were considered preliminary and mainly as ‘proof of concept’, findings were consistent with ecological considerations known from pelagic habitats and host versus parasite populations, with recurrent ecological patterns in two contrasting lake ecosystems. We conclude that this approach will contribute to a better understanding of the ecological significance of zoosporic organisms in microbial food webs of pelagic ecosystems.     

Diversity of planktonic rotifer assemblages in the water bodies of the Gemenc floodplain (Duna-Dráva National Park,Hungary)

Gemenc floodplain lies between river kilometres km 1503 and 1469 of the Danube River; it is a part of the Danube-Dráva National Park in Hungary. The floodplain is one of the largest in Europe with an 18,000 hectares (Natura 2000) area, and various characteristic side arms and backwaters which lie completely in the floodplain. The area needs hydrological revitalization because of the sinking of the river bed caused by the regulation of the main arm at the end of the 19^th century. For this revitalization an exhaustive knowledge of the hydrobiological relationships among the different water bodies is required. The aims of this study were to explore connections among the hydrological events, physico-chemical parameters of the water bodies and the diversity of the planktonic rotifer assemblages. From 2002 to 2004, 56 planktonic and 15 tychoplanktonic rotifer taxa were found in the area. The diversity of rotifer assemblages was generally higher in the parapotamal water bodies than in the main arm and in the plesio/paleo-potamal water bodies, which could be explained by the intermediate disturbance hypothesis. The diversity, dominance, and evenness of the assemblages were correlated with water flow and water temperature. The most important factors influencing the diversity patterns were the occurrence of flow (retention time) as a disturbance, connectivity with the main arm, and habitat diversity of the given water body. Most of these factors are determined by the water level fluctuation of the main arm.