酵母双杂合系统在丙型肝炎病毒NS5A研究中的应用

母双杂合系统是在酵母细胞中研究蛋白－蛋白相互作用的新技术。应用该技术,以丙型肝炎病毒（ＨＣＶ）非结构蛋白５Ａ（ＮＳ５Ａ）为“诱饵”,筛检了人中细胞ＨｅｐＧ２来源的ｃＤＮＡ文库,获得了７个ＮＳ５Ａ结合蛋白的基因克隆。报道了其中两个阳性克隆（＃２、＃１６）的结果,并对“人核小体组装蛋白相关蛋白”（Ｈｕｍａｎ ｎｕｃｌｅｏｓｏｍｅ ａｓｓｅｍｂｌｙ ｐｒｏｔｅｉｎ－ｒｅｌａｔｅｄ ｐｒｏｔｅｉｎ,ｈＮＲ     

大规模的酵母双杂交系统在蛋白质相互作用组图谱中的应用

蛋白质-蛋白质之间的相互作用是蛋白质发挥其功能的重要途径之一。通过研究蛋白质组中所有蛋白质之间的相互作用做出蛋白质相互作用对图谱是功能基因组时代许多科学家关注的问题,而大规模的酵母双杂交系统是蛋白质相互作用对图谱的研究中应用较为广泛的策略。近两年来该策略最具代表的实例是用它进行酵母中所有蛋白之间相互作用的检查。但是巨大的蛋白质网络比我们想象要大得多,单一的双杂交系统不能解决所有问题,需要同其它的方法有效地结合。     

用酵母双杂交体系确定病毒特异性蛋白与宿主蛋白的相互作用

用B型流行性感冒病毒BM2蛋白开放阅读框架片段,构建酵母双杂交体系中的"饵”载体,明确其在酵母细胞中的表达,排除自身激活作用,并用酵母双杂交法从人cDNA基因库中筛选出与BM2蛋白相互作用的蛋白.结果表明B型流感病毒BM2蛋白与宿主细胞的某一蛋白有相互作用.应用酵母双杂交体系,可以非常有效地从人cDNA基因库中确定与"饵”蛋白相互作用的蛋白基因.     

正常大鼠肾脏细胞溶酶体膜的构成蛋白

溶酶体是细胞内对其吞噬之物质溶解及消化之主要场所,同时也是细胞自噬作用的主要细胞器。为了进一步了解此细胞器的功能与结构,我们采用免疫荧光标记法,通过5种针对大鼠肝细胞溶酶体膜蛋白的特异性单克隆抗体,对大鼠正常肾脏细胞溶酶体膜蛋白进行了标记,并通过NH_4Cl溶液对溶酶体作了膜膨胀处理,结果显示:(1)细胞内溶酶体膜蛋白是由多种蛋白所构成,其各种蛋白的含量是不同的;(2)所有溶酶体膜蛋白均表达于该细胞器之表面;(3)NH_4Cl溶液能有效地使溶酶体扩张,这将有和于进一步研究溶酶体的结构。     

创伤弧菌外膜蛋白免疫刺激复合物对欧洲鳗鲡的免疫保护性分析

创伤弧菌(Vibrio vulnificus)是一种革兰氏染色阴性、多形性、运动性、有荚膜的嗜盐性细菌, 属于弧菌属第5群, 主要生长于海水中、鱼类及贝母类等体内1。根据寄主范围和生化反应类型的不同, 将创伤弧菌分为3 个生物型: 生物Ⅰ型(产吲哚)2、生物Ⅱ型(不产吲哚)3以及1999 年以色列的研究人员报道的创伤弧菌生物Ⅲ型。       

鱼类病原菌外膜蛋白及其免疫原性研究进展

细菌性疾病是水产养殖病害中最常见且危害甚为严重的一类疾病1。长期以来,一直用于鱼类细菌性疾病防治的西药类药物,由于会导致病原菌产生耐药性,在鱼体内产生药物残留危害人类健康等副作用而被限制使用2。因此,为了选择更加安全有效的防治方法,疫苗免疫逐步得到了人们的重视。       

慢性呼吸衰竭病人红细胞膜蛋白和红细胞变形能力的研究

目的：探讨红细胞膜蛋白在红细胞变形性改变中的作用。方法：参照Ｌｅａｍｍｌｉ和Ｐｅａｃｏｃｋ方法,测定了肺心病Ⅰ型呼吸衰竭（Ⅰ组）１８例、Ⅱ型呼吸衰竭（Ⅱ组）１８例和健康对照（ＣＧ）２０例的红细胞膜带３蛋白、膜收缩蛋白二聚体（ＳｐＤ）和四聚体（ＳｐＴ）的相对含量与红细胞变形能力。结果：Ⅰ、Ⅱ组带３蛋白、ＳｐＤ、ＳｐＴ相对含量和红细胞变形指数（ＤＩ）与对照组均有显著差异,且肺心病病人的ＤＩ与带３蛋白相对含量呈显著正相关,与ＳｐＤ／ＳｐＴ比值呈显著负相关。结论：带３蛋白和膜收缩蛋白的异常,可能是导致肺心病人红细胞变形能力降低的重要因素之一。     

一种快速提取禽源性大肠埃希氏菌外胰蛋白的方法

介绍一种快速提取禽源性大肠埃希氏菌外膜蛋白的方法。该法是对Ｋａｐｕｒ等发表的方法的改进。全过程只需超速离心一次,比Ｋａｐｕｒ等的方法缩短了４ｈ。所得样品可直接用于禽源性大肠埃希氏菌外膜蛋白模式的测定。     

玉米精细胞质膜特异蛋白的纯化

在获得6个品种的玉米(Zea mays L.)花粉精细胞后,采用N-hydroxysuccinimido-biotin(NHS-biotin)标记其外膜蛋白,并通过SDS-PAGE和Western blotting对比了其中主要标记蛋白,发现其主要蛋白带差异并不显著,主要标记蛋白分子量均集中于91、60、43、30和17kD。采用免疫亲和层析技术进一步纯化已获得的混杂少量其它细胞器成分的精细胞质膜制剂,即利用制备的体细胞主要细胞器:线粒体、内质网、高尔基体及质膜的膜蛋白,分别免疫豚鼠,从其抗血清中纯化获得IgG,并进一步制成各种膜蛋白的免疫亲和吸附制剂。利用此技术进一步纯化经NHS-biotin标记的精细胞质膜蛋白,获得精细胞质膜特异的蛋白质,其中最为显著的蛋白质分子量约为65、22kD。     

PROTEINS INVOLVED IN MEMBRANE TRANSPORT BETWEEN THE ER AND THE GOLGI APPARATUS: 21 PUTATIVE PLANT HOMOLOGUES REVEALED BY DBEST SEARCHING

Numerous proteins have been identified in yeast and mammalian cells which are involved in trafficking between the endoplasmic reticulum and the Golgi apparatus. A great number of partial cDNA sequences now available from the two major plant model species, Arabidopsis thaliana and Oryza sativa, makes it possible to identify putative plant homologues of known genes/proteins from non-plant species. The authors used this approach to screen the database of Expressed Sequence Tags (dbEST) in order to detect plant homologues of proteins involved in membrane transport between ER and Golgi. Availability of these partial sequences will facilitate the screening of cDNA and genomic libraries otherwise performed using heterologous probes derived from animal and yeast genes. As the plant Golgi complex differs in many respects from its mammalian and yeast counterparts, the dbEST clones found can be directly used for various functional assays (immunoprecipitation, two-hybrid analysis, transgenic plants etc.) to test the exact roles of the encoded proteins and identify their functional partners, some of which may be specific for plants.     

Affinity maturation of a computationally designed binding protein affords a functional but disordered polypeptide

Computational methods have been recently applied to the design of protein–protein interfaces. Using this approach, a 61 amino acid long protein called Spider Roll was engineered to recognize the kinase domain of the human p21-activated kinase 1 (PAK1) with good specificity but modest affinity (K_D = 100 μM). Here we show that this artificial protein can be optimized by yeast surface display and fluorescence-activated cell sorting. After three rounds of mutagenesis and screening, a diverse set of tighter binding variants was obtained. A representative binder, MSR7, has a >10²-fold higher affinity for PAK1 when displayed on yeast and a 6 to 11-fold advantage when produced free in solution. In contrast to the starting Spider Roll protein, however, MSR7 unexpectedly exhibits characteristics typical of partially disordered proteins, including lower α-helical content, non-cooperative thermal denaturation, and NMR data showing peak broadening and poor signal dispersion. Although conformational disorder is increasingly recognized as an important property of proteins involved in cellular signaling and regulation, it is poorly modeled by current computational methods. Explicit consideration of structural flexibility may improve future protein designs and provide deeper insight into molecular events at protein–protein interfaces.     

蚕豆保卫细胞原生质体质膜ABA结合蛋白与气孔对ABA敏感性的关系

在测定蚕豆(Vicia faba L.)保卫细胞原生质体质膜ABA结合蛋白的解离常数(Kd)和最大结合容量的基础上,进一步研究了几种因子(pH、光)对Kd和最大结合容量的影响。结果显示:pH并不改变结合蛋白的Kd值,而仅影响每个原生质体结合的分子数;光、暗处理的结果表明,光可使结合蛋白的Kd值增大,每个原生质体结合的ABA分子数减少,而暗处理可使结合蛋白的Kd值减小及每个原生质体结合的分子数增多,说明黑暗可提高气孔保卫细胞对ABA的敏感性,而光可以降低气孔保卫细胞对ABA的敏感性。因此,光、暗可以通过调节ABA结合蛋白的Kd值来调节气孔对ABA的敏感性。     

重组含有Epstein-Barr病毒潜伏膜蛋白1(LMP1)基因的杆状病毒在昆虫细胞中的表达

用杆状病毒表达系统重组病毒,在昆虫细胞中表达了完整的含有ＥＢＶ－ＬＭＰ１基因３个外显子开放读码框架的长２．３ｋｂ的ｃＤＮＡ片段。用重组病毒感染Ｓｆ９细胞,用免疫荧光染色,结果表明：４８小时表达重组蛋白,７２小时细胞较完整,免疫荧光染色强阳性,９６小时后细胞出现破碎。我们采集７２小时的组织培养上清和细胞破碎裂解液,分别采用ＳＤＳ－ＰＡＧＥ、ＨＰＬＣ分子筛法,用免疫蛋白印迹法实验证明,表达的蛋白能被抗ＬＭＰ１的单克隆抗体所识别,测定表达蛋白的分子量为６０ｋＤ。经蛋白含量扫描图分析,采用Ｓｅｐｈａｄｅｘ－７５柱初步纯化表达的ＬＭＰ１蛋白,将后者进行裸鼠体内致瘤实验,未见肿瘤生长。     

GENOME DIVERGENCE AND THE GENETIC ARCHITECTURE OF BARRIERS TO GENE FLOW BETWEEN LYCAEIDES IDAS AND L. MELISSA

Genome divergence during speciation is a dynamic process that is affected by various factors, including the genetic architecture of barriers to gene flow. Herein we quantitatively describe aspects of the genetic architecture of two sets of traits, male genitalic morphology and oviposition preference, that putatively function as barriers to gene flow between the butterfly species Lycaeides idas and L. melissa. Our analyses are based on unmapped DNA sequence data and a recently developed Bayesian regression approach that includes variable selection and explicit parameters for the genetic architecture of traits. A modest number of nucleotide polymorphisms explained a small to large proportion of the variation in each trait, and average genetic variant effects were nonnegligible. Several genetic regions were associated with variation in multiple traits or with trait variation within‐ and among‐populations. In some instances, genetic regions associated with trait variation also exhibited exceptional genetic differentiation between species or exceptional introgression in hybrids. These results are consistent with the hypothesis that divergent selection on male genitalia has contributed to heterogeneous genetic differentiation, and that both sets of traits affect fitness in hybrids. Although these results are encouraging, we highlight several difficulties related to understanding the genetics of speciation.     

3'''',5''''-cAMP对艾氏腹水癌细胞膜功能的作用(cAMP的转运和膜蛋白分子的侧向运动)

本工作用外源性cAMP加氨茶碱处理艾氏腹水癌小鼠,于不同瘤龄期观察到癌细胞膜对cAMP的转运功能和膜内蛋白质分子侧向扩散运动的变化、以及膜内可动性蛋白质分子的百分比的改变。这些表型变化均在接种后5—7天最为显著。接种后第7天,实验组癌细胞膜对cAMP的转运加强,而膜内蛋白质分子侧向扩散运动??减慢,抑制率达72.8%,二者P值均小于0.01。而接种后第9天,实验组与对照组之间二者变化均无统计学差异。这些变化表现了癌细胞膜的功能状态的变化。进一步阐明了我们过去工作——3’,5’-cAMP对体内艾氏腹水癌细胞作用机理,接种后第9天癌细胞内cAMP水平升高不是外源性cAMP的积累,而是内源性的代谢结果;阐明了接种后第5天cAMP-PDE活性下降的动因。同时我们也进一步看到膜功能、膜结构和胞质内cAMP水平及其二酯酶活性等变化的动力学关系,以及它们和癌细胞增殖抑制之间的相互关系。从而说明这些变化在癌细胞“逆转”中的意义与其内在联系。     

TARGETING AND COVALENT MODIFICATION OF CELL WALL AND MEMBRANE PROTEINS HETEROLOGOUSLY EXPRESSED IN THE DIATOM CYLINDROTHECA FUSIFORMIS (BACILLARIOPHYCEAE)

Diatoms are unicellular organisms encased by silica-based cell walls that display species-specific structures. Morphogenesis of diatom cell walls is believed to be controlled by a polysaccharide/protein-matrix that remains associated with mature cell walls. Recently, a family of calcium-binding glycoproteins, the frustulins, has been identified as major diatom cell wall component. Here we describe a transformation-based approach to investigate intracellular targeting and function of frustulins. When ε-frustulin from the diatom Navicula pelliculosa is expressed in Cylindrotheca fusiformis, it is correctly targeted into the cell wall. Furthermore, the unique N-terminus of ε-frustulin was properly modified, indicating that C. fusiformis and N. pelliculosa contain homologous frustulin-processing proteases. In a different transformation experiment, a modified version of the Chlorella kessleri hexose/H⁺ symporter bearing a bacterial biotinyl-acceptor domain was expressed in C. fusiformis. The transporter became biotinylated in vivo and was functionally incorporated into the plasma membrane, allowing C. fusiformis to take up ¹⁴C-glucose and ¹⁴C-glucosamine. Stage-specific radioactive labeling with this transformant revealed that secretion of frustulins is strongly enhanced during cell wall development. The data presented in this study demonstrate for the first time functional expression of a membrane protein and correct targeting of a cell wall protein heterologously expressed in a diatom cell.     

FREEZE-FRACTURE STUDY OF THE SINGLE MEMBRANE BETWEEN HOST CELL AND ENDOCYTOBIONT IN THE DINOFLAGELLATES GLENODINIUM FOLIACEUM AND PERIDINIUM BALTICUM1

The dinoflagellates Glenodinium foliaceum Stein and Peridinium balticum (Levander) Lemmermann harbor a chrysophytic endocytobiont which is bounded by only a single membrane. This unique membrane is of particular interest because it could correspond to an intermediate stage in the evolution of “complex” plastids found in many Plastids of this type are surrounded by three or membranes instead of the usual two. With freeze-fracture techniques, we show that the single membrane in P. balticum has a pronounced polarity with respect to the distribution of intramembrane particles (IMPs) on the two corresponding fracture faces. The inner face exhibited more IMPs than the outer. We suggest that this stdedness identifies the separating membrane as the plasma membrane of the endocytobiont. A symbiontophoric vacuole with a separate membrane apparently is lacking. In the endocytobiosis of G. foliaccum, the single membrane separating host and endocylobiont exhibits a symmetrical particle partition. Nevertheless, from the size distribution of the IMPs it appears likely that this membrane, too, corresponds to the plasma membrane of the symbiont.     

THE ATOMIC FORCE MICROSCOPE DETECTS ATP-SENSITIVE PROTEIN CLUSTERS IN THE PLASMA MEMBRANE OF TRANSFORMED MDCK CELLS

Plasma membrane proteins are supposed to form clusters that allow ‘functional cross-talk’ between individual molecules within nanometre distance. However, such hypothetical protein clusters have not yet been shown directly in native plasma membranes. Therefore, we developed a technique to get access to the inner face of the plasma membrane of cultured transformed kidney (MDCK) cells. The authors applied atomic force microscopy (AFM) to visualize clusters of native proteins protruding from the cytoplasmic membrane surface. We used the K⁺channel blocker iberiotoxin (IBTX), a positively charged toxin molecule, that binds with high affinity to plasma membrane potassium channels and to atomically flat mica. Thus, apical plasma membranes could be ‘glued’ with IBTX to the mica surface with the cytosolic side of the membrane accessible to the scanning AFM tip. The topography of these native inside-out membrane patches was imaged with AFM in electrolyte solution mimicking the cytosol. The plasma membrane could be clearly identified as a lipid bilayer with the characteristic height of 4.9±0.02nm. Multiple proteins protruded from the lipid bilayer into the cytosolic space with molecule heights between 1 and 20nm. Large protrusions were most likely protein clusters. Addition of the proteolytic enzyme pronase to the bath solution led to the disappearance of the proteins within minutes. The metabolic substrate ATP induced a shape-change of the protein clusters and smaller subunits became visible. ADP or the non-hydrolysable ATP analogue, ATP-γ-S, could not exert similar effects. It is concluded that plasma membrane proteins (and/or membrane associated proteins) form ‘functional clusters’ in their native environment. The ‘physiological’ arrangement of the protein molecules within a cluster requires ATP.